Wall clock time and date at job start Tue Mar 31 2020 18:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47068 * 2 1 4 4 C 1.46497 * 119.99736 * 280.25590 * 3 2 1 5 5 C 1.53001 * 109.47159 * 269.99647 * 4 3 2 6 6 H 1.09010 * 109.46971 * 59.99639 * 5 4 3 7 7 O 1.42896 * 109.47202 * 300.00514 * 5 4 3 8 8 C 1.53000 * 109.47709 * 179.97438 * 5 4 3 9 9 F 1.39905 * 109.46659 * 59.99967 * 8 5 4 10 10 F 1.39901 * 109.47337 * 180.02562 * 8 5 4 11 11 F 1.39905 * 109.46906 * 300.00460 * 8 5 4 12 12 C 1.34775 * 120.00266 * 100.25091 * 3 2 1 13 13 O 1.21581 * 120.00274 * 186.62729 * 12 3 2 14 14 C 1.47643 * 119.99611 * 6.62770 * 12 3 2 15 15 C 1.40013 * 119.89699 * 329.11739 * 14 12 3 16 16 C 1.36321 * 120.10313 * 179.71946 * 15 14 12 17 17 C 1.40887 * 119.89196 * 0.55725 * 16 15 14 18 18 C 1.41114 * 120.09950 * 179.69840 * 17 16 15 19 19 H 1.07999 * 119.99480 * 209.57649 * 18 17 16 20 20 C 1.40219 * 120.00445 * 29.57326 * 18 17 16 21 21 N 1.30649 * 119.99939 * 10.76473 * 20 18 17 22 22 Si 1.86801 * 120.00469 * 190.76349 * 20 18 17 23 23 H 1.48502 * 109.46792 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47128 * 119.99707 * 22 20 18 25 25 H 1.48492 * 109.47113 * 240.00173 * 22 20 18 26 26 C 1.40882 * 119.79659 * 359.72369 * 17 16 15 27 27 C 1.36326 * 119.88857 * 359.97438 * 26 17 16 28 28 H 1.09001 * 109.47440 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47105 * 300.00225 * 1 2 3 30 30 H 1.08999 * 109.47438 * 59.99782 * 1 2 3 31 31 H 1.08993 * 109.46939 * 240.00148 * 2 1 3 32 32 H 1.08996 * 109.47103 * 119.99534 * 2 1 3 33 33 H 1.09000 * 109.47303 * 29.99594 * 4 3 2 34 34 H 1.09006 * 109.47492 * 150.00103 * 4 3 2 35 35 H 0.96697 * 114.00216 * 299.99731 * 7 5 4 36 36 H 1.07993 * 119.94476 * 0.02562 * 15 14 12 37 37 H 1.08002 * 120.04845 * 180.25684 * 16 15 14 38 38 H 0.96995 * 120.00506 * 179.97438 * 21 20 18 39 39 H 1.08000 * 120.05896 * 179.97438 * 26 17 16 40 40 H 1.08005 * 119.94165 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0495 2.1471 -1.2485 5 6 3.3986 1.9406 -1.9399 6 1 3.5361 0.8818 -2.1595 7 8 4.4481 2.3887 -1.0798 8 6 3.4311 2.7399 -3.2441 9 9 3.2544 4.0989 -2.9626 10 9 4.6645 2.5506 -3.8766 11 9 2.4035 2.3007 -4.0859 12 6 2.4388 1.9474 1.1485 13 8 2.7299 3.1276 1.1736 14 6 2.5459 1.1344 2.3763 15 6 1.6760 0.0558 2.5771 16 6 1.7750 -0.7012 3.7065 17 6 2.7467 -0.3895 4.6778 18 6 2.8488 -1.1663 5.8515 19 1 3.2016 -0.7165 6.7677 20 6 2.4921 -2.5222 5.8281 21 7 2.2684 -3.1193 4.6878 22 14 2.3369 -3.4749 7.4274 23 1 2.6405 -2.5765 8.5702 24 1 0.9528 -3.9960 7.5609 25 1 3.2948 -4.6097 7.4226 26 6 3.6159 0.7003 4.4740 27 6 3.5134 1.4478 3.3385 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.2489 1.8053 -1.9045 34 1 1.9121 3.2059 -1.0288 35 1 4.3896 3.3242 -0.8422 36 1 0.9288 -0.1798 1.8339 37 1 1.1062 -1.5356 3.8586 38 1 2.0220 -4.0573 4.6716 39 1 4.3621 0.9433 5.2159 40 1 4.1790 2.2838 3.1816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275121194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:48 Heat of formation + Delta-G solvation = -213.971954 kcal Electronic energy + Delta-G solvation = -29054.635402 eV Core-core repulsion = 24419.376614 eV Total energy + Delta-G solvation = -4635.258789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.22011 -48.73323 -48.69771 -41.37716 -39.20427 -38.26010 -36.97756 -35.57875 -33.05901 -31.65009 -31.24195 -30.73105 -28.10867 -26.55117 -24.42200 -23.83782 -22.89373 -22.73820 -20.60765 -19.69224 -19.57247 -19.34970 -19.29146 -18.09645 -17.56748 -17.29818 -16.84318 -16.33063 -16.17423 -15.81422 -15.53419 -15.34899 -15.30415 -15.12843 -14.97667 -14.84384 -14.83447 -14.64898 -14.41070 -14.34459 -13.76768 -13.59789 -13.32760 -13.18311 -13.00295 -12.85119 -12.73956 -12.62448 -12.52487 -12.34703 -11.89106 -11.73255 -11.70264 -11.18747 -11.06572 -10.59560 -9.71791 -9.42943 -9.29507 -8.68948 -6.45471 0.51999 1.14784 1.40060 1.42008 1.45158 1.55598 2.01192 2.12820 2.20780 2.64189 2.73094 2.77843 2.88194 3.35351 3.62782 3.66711 3.69622 4.04290 4.08386 4.31623 4.37821 4.44278 4.45748 4.60636 4.67100 4.87311 4.96950 5.05276 5.08938 5.19655 5.31875 5.39389 5.57122 5.65116 5.82044 5.98262 6.03576 6.23165 6.27915 6.46161 6.59682 6.83566 6.92906 7.35330 8.25795 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.024594 B = 0.002859 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.193148 B = 9790.693472 C =10180.243789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.065 3.935 3 N -0.599 5.599 4 C 0.083 3.917 5 C 0.059 3.941 6 H 0.155 0.845 7 O -0.540 6.540 8 C 0.431 3.569 9 F -0.185 7.185 10 F -0.183 7.183 11 F -0.174 7.174 12 C 0.582 3.418 13 O -0.589 6.589 14 C -0.280 4.280 15 C -0.085 4.085 16 C -0.189 4.189 17 C 0.101 3.899 18 C -0.483 4.483 19 H 0.078 0.922 20 C 0.038 3.962 21 N -0.808 5.808 22 Si 0.985 3.015 23 H -0.261 1.261 24 H -0.260 1.260 25 H -0.265 1.265 26 C -0.249 4.249 27 C -0.038 4.038 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.392 0.608 36 H 0.158 0.842 37 H 0.114 0.886 38 H 0.294 0.706 39 H 0.100 0.900 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 2.004 -13.984 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.057 4.057 3 N -0.330 5.330 4 C -0.041 4.041 5 C -0.004 4.004 6 H 0.172 0.828 7 O -0.346 6.346 8 C 0.375 3.625 9 F -0.167 7.167 10 F -0.164 7.164 11 F -0.156 7.156 12 C 0.377 3.623 13 O -0.472 6.472 14 C -0.285 4.285 15 C -0.103 4.103 16 C -0.209 4.209 17 C 0.098 3.902 18 C -0.512 4.512 19 H 0.097 0.903 20 C -0.179 4.179 21 N -0.432 5.432 22 Si 0.806 3.194 23 H -0.185 1.185 24 H -0.185 1.185 25 H -0.190 1.190 26 C -0.269 4.269 27 C -0.058 4.058 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.107 0.893 35 H 0.242 0.758 36 H 0.175 0.825 37 H 0.132 0.868 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.415 1.785 -14.171 14.686 hybrid contribution 0.143 0.411 0.554 0.704 sum -3.272 2.196 -13.618 14.177 Atomic orbital electron populations 1.22230 0.94347 1.03823 1.02507 1.22633 0.95619 0.81628 1.05778 1.47522 1.64504 1.14833 1.06152 1.22107 0.96049 0.99235 0.86718 1.23778 0.91247 1.00643 0.84760 0.82753 1.86682 1.48190 1.33100 1.66666 1.21533 0.73681 0.79000 0.88259 1.93192 1.95043 1.34915 1.93532 1.93201 1.44106 1.94938 1.84188 1.93200 1.59294 1.89132 1.73943 1.18388 0.74335 0.86033 0.83541 1.90592 1.52955 1.17238 1.86409 1.19192 1.07269 1.03860 0.98146 1.21751 0.98483 0.92762 0.97282 1.21076 1.00966 1.02401 0.96433 1.18151 0.88632 0.90361 0.93088 1.20044 1.38937 0.95187 0.97008 0.90341 1.26790 0.91259 0.98581 1.01303 1.69724 1.31906 1.13155 1.28464 0.85095 0.79215 0.77839 0.77250 1.18491 1.18487 1.19013 1.20885 1.03676 1.02740 0.99554 1.20450 0.96040 0.96410 0.92867 0.89374 0.93435 0.90380 0.88437 0.88072 0.85362 0.89328 0.75776 0.82520 0.86790 0.89493 0.88173 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.39 9.16 71.98 0.66 -2.73 16 2 C 0.06 1.56 5.58 86.38 0.48 2.05 16 3 N -0.60 -17.06 2.44 -825.46 -2.01 -19.08 16 4 C 0.08 1.80 4.93 86.38 0.43 2.23 16 5 C 0.06 1.23 3.24 30.59 0.10 1.33 16 6 H 0.16 2.74 8.14 -2.38 -0.02 2.72 16 7 O -0.54 -14.84 12.24 -148.61 -1.82 -16.66 16 8 C 0.43 8.50 2.85 71.98 0.21 8.71 16 9 F -0.19 -3.99 16.42 44.97 0.74 -3.25 16 10 F -0.18 -4.08 17.26 44.97 0.78 -3.31 16 11 F -0.17 -3.10 16.80 44.97 0.76 -2.34 16 12 C 0.58 22.50 6.84 86.73 0.59 23.09 16 13 O -0.59 -25.10 15.53 -3.60 -0.06 -25.16 16 14 C -0.28 -12.24 5.59 -19.93 -0.11 -12.35 16 15 C -0.08 -3.56 7.39 22.25 0.16 -3.39 16 16 C -0.19 -9.10 8.59 22.47 0.19 -8.91 16 17 C 0.10 5.18 5.54 -21.28 -0.12 5.06 16 18 C -0.48 -24.54 9.05 23.46 0.21 -24.33 16 19 H 0.08 3.88 7.87 -2.91 -0.02 3.86 16 20 C 0.04 1.76 5.25 85.35 0.45 2.21 16 21 N -0.81 -38.07 10.88 21.87 0.24 -37.83 16 22 Si 0.99 35.14 29.58 68.60 2.03 37.17 16 23 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 24 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 25 H -0.27 -9.11 7.11 99.48 0.71 -8.41 16 26 C -0.25 -12.27 9.73 22.47 0.22 -12.05 16 27 C -0.04 -1.80 9.52 22.25 0.21 -1.59 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.14 7.11 -2.38 -0.02 1.13 16 30 H 0.08 1.22 7.77 -2.39 -0.02 1.20 16 31 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 32 H 0.10 3.13 3.91 -3.11 -0.01 3.12 16 33 H 0.13 1.91 7.36 -2.39 -0.02 1.89 16 34 H 0.09 2.18 7.00 -2.38 -0.02 2.16 16 35 H 0.39 10.14 8.33 -74.06 -0.62 9.52 16 36 H 0.16 5.37 2.74 -2.91 -0.01 5.36 16 37 H 0.11 5.58 6.27 -2.91 -0.02 5.56 16 38 H 0.29 12.30 8.29 -92.71 -0.77 11.53 16 39 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 40 H 0.10 4.53 7.92 -2.91 -0.02 4.51 16 Total: -1.00 -60.69 342.79 4.83 -55.86 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: 0.50 Total: 35.28 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 3.68 Total: -20.69 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -1.78 Total: -56.90 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -1.88 Total: -41.82 kcal Atomic # 9 Polarization: -11.17 SS G_CDS: 2.27 Total: -8.90 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Total: -60.69 4.83 -55.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275121194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.108 kcal (2) G-P(sol) polarization free energy of solvation -60.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds