Wall clock time and date at job start Tue Mar 31 2020 16:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 110.32728 * 2 1 4 4 C 1.34779 * 120.00015 * 300.70388 * 3 2 1 5 5 O 1.21718 * 119.99886 * 359.97438 * 4 3 2 6 6 C 1.46247 * 120.00078 * 179.97438 * 4 3 2 7 7 C 1.35019 * 120.00244 * 179.97438 * 6 4 3 8 8 C 1.46960 * 120.00391 * 179.97438 * 7 6 4 9 9 C 1.40026 * 120.10276 * 179.97438 * 8 7 6 10 10 C 1.37594 * 119.89669 * 180.02562 * 9 8 7 11 11 C 1.39186 * 120.10270 * 0.25827 * 10 9 8 12 12 O 1.35570 * 119.89533 * 179.72239 * 11 10 9 13 13 C 1.34778 * 117.00452 * 354.44371 * 12 11 10 14 14 H 1.08005 * 119.99749 * 5.06251 * 13 12 11 15 15 C 1.38712 * 120.00163 * 185.05579 * 13 12 11 16 16 N 1.31511 * 120.00210 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00313 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46972 * 89.99793 * 17 15 13 19 19 H 1.48501 * 109.47530 * 210.00204 * 17 15 13 20 20 H 1.48497 * 109.47022 * 330.00388 * 17 15 13 21 21 C 1.39173 * 120.19870 * 359.49053 * 11 10 9 22 22 C 1.37597 * 120.10372 * 0.50460 * 21 11 10 23 23 C 1.54489 * 110.36916 * 122.23839 * 2 1 3 24 24 C 1.54573 * 102.14299 * 134.29345 * 23 2 1 25 25 O 1.45836 * 104.44633 * 333.14933 * 24 23 2 26 26 C 1.34297 * 109.95905 * 30.55496 * 25 24 23 27 27 O 1.20824 * 125.22293 * 159.24299 * 26 25 24 28 28 H 1.08994 * 109.47469 * 59.29919 * 1 2 3 29 29 H 1.09006 * 109.47275 * 179.29798 * 1 2 3 30 30 H 1.09005 * 109.47244 * 299.29385 * 1 2 3 31 31 H 0.96995 * 120.00073 * 120.70086 * 3 2 1 32 32 H 1.08003 * 119.99859 * 359.97438 * 6 4 3 33 33 H 1.08003 * 119.99897 * 359.97438 * 7 6 4 34 34 H 1.07997 * 120.04753 * 0.02562 * 9 8 7 35 35 H 1.08001 * 119.95149 * 179.97438 * 10 9 8 36 36 H 0.96998 * 120.00620 * 179.97438 * 16 15 13 37 37 H 1.08004 * 119.94780 * 180.26075 * 21 11 10 38 38 H 1.08000 * 120.05081 * 179.76535 * 22 21 11 39 39 H 1.08997 * 110.87345 * 252.45308 * 23 2 1 40 40 H 1.09002 * 110.86926 * 15.92682 * 23 2 1 41 41 H 1.08998 * 110.44077 * 91.89745 * 24 23 2 42 42 H 1.09004 * 110.43951 * 214.28588 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0389 1.3738 0.0000 4 6 1.7141 2.2128 -1.0036 5 8 0.9984 1.8289 -1.9102 6 6 2.2217 3.5843 -1.0033 7 6 1.8968 4.4246 -2.0089 8 6 2.4064 5.8031 -2.0084 9 6 2.0712 6.6761 -3.0506 10 6 2.5511 7.9657 -3.0461 11 6 3.3729 8.4011 -2.0106 12 8 3.8479 9.6709 -2.0133 13 6 3.5827 10.4212 -3.1010 14 1 2.9466 10.0329 -3.8828 15 6 4.1265 11.6920 -3.2164 16 7 4.9013 12.1647 -2.2647 17 14 3.7594 12.7317 -4.7243 18 1 2.5413 13.5453 -4.4801 19 1 4.9090 13.6313 -4.9972 20 1 3.5361 11.8451 -5.8944 21 6 3.7044 7.5384 -0.9700 22 6 3.2291 6.2472 -0.9660 23 6 2.0677 -0.7726 1.2250 24 6 3.1702 -1.6541 0.5952 25 8 2.7464 -1.8333 -0.7887 26 6 2.0567 -0.7568 -1.1999 27 8 1.8827 -0.4393 -2.3526 28 1 -0.3634 0.5246 -0.8836 29 1 -0.3634 -1.0276 -0.0126 30 1 -0.3634 0.5028 0.8963 31 1 2.6095 1.6796 0.7223 32 1 2.8565 3.9250 -0.1987 33 1 1.2624 4.0838 -2.8138 34 1 1.4370 6.3378 -3.8566 35 1 2.2934 8.6397 -3.8497 36 1 5.2819 13.0532 -2.3454 37 1 4.3390 7.8819 -0.1664 38 1 3.4900 5.5773 -0.1600 39 1 2.4907 -0.0884 1.9606 40 1 1.2847 -1.3850 1.6722 41 1 4.1335 -1.1458 0.6356 42 1 3.2265 -2.6157 1.1055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291468070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:27 Heat of formation + Delta-G solvation = -117.422592 kcal Electronic energy + Delta-G solvation = -26711.707159 eV Core-core repulsion = 22622.491805 eV Total energy + Delta-G solvation = -4089.215354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 3.56 seconds Orbital eigenvalues (eV) -42.46009 -40.87343 -40.28783 -38.58877 -38.50380 -36.54846 -34.74328 -34.03796 -32.81450 -31.96958 -30.47857 -29.53633 -27.52477 -26.53471 -24.87311 -23.73681 -23.61671 -22.54988 -21.09095 -20.64573 -19.76828 -18.90301 -18.49551 -18.29436 -17.86094 -17.21887 -16.53795 -16.40176 -16.16096 -15.87120 -15.65785 -15.61826 -15.39275 -15.23951 -14.80146 -14.66192 -14.56712 -14.11075 -13.65299 -13.60828 -13.45764 -13.37239 -13.26003 -13.15114 -12.74938 -12.71225 -12.62366 -12.56352 -12.21231 -12.13741 -11.50610 -11.45827 -11.22230 -11.11055 -10.77372 -10.56893 -10.11090 -9.89766 -8.68801 -8.52849 -6.18810 -0.25008 0.58037 0.86440 1.13393 1.35234 1.45107 1.52155 2.13261 2.14643 2.24957 2.37465 2.83919 2.91316 3.16987 3.19234 3.42068 3.65088 3.79753 3.93708 3.95585 4.07873 4.23318 4.31180 4.34969 4.47446 4.58461 4.61507 4.65578 4.67746 4.82200 4.94136 4.95537 5.02337 5.17310 5.18933 5.29252 5.31337 5.36259 5.57806 5.63400 5.72066 5.80636 5.96825 6.09871 6.41872 6.55250 6.91602 7.30294 7.68459 8.69093 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.033457 B = 0.001858 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.699040 B =15068.993214 C =15394.884523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.119 3.881 3 N -0.702 5.702 4 C 0.540 3.460 5 O -0.559 6.559 6 C -0.241 4.241 7 C 0.012 3.988 8 C -0.170 4.170 9 C -0.043 4.043 10 C -0.250 4.250 11 C 0.130 3.870 12 O -0.218 6.218 13 C -0.417 4.417 14 H 0.104 0.896 15 C -0.018 4.018 16 N -0.913 5.913 17 Si 1.018 2.982 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.254 1.254 21 C -0.205 4.205 22 C -0.035 4.035 23 C -0.142 4.142 24 C 0.043 3.957 25 O -0.370 6.370 26 C 0.461 3.539 27 O -0.474 6.474 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.426 0.574 32 H 0.159 0.841 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.275 0.725 37 H 0.126 0.874 38 H 0.164 0.836 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 -26.097 12.567 29.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.030 3.970 3 N -0.360 5.360 4 C 0.331 3.669 5 O -0.439 6.439 6 C -0.262 4.262 7 C -0.008 4.008 8 C -0.171 4.171 9 C -0.061 4.061 10 C -0.269 4.269 11 C 0.077 3.923 12 O -0.123 6.123 13 C -0.493 4.493 14 H 0.121 0.879 15 C -0.217 4.217 16 N -0.549 5.549 17 Si 0.837 3.163 18 H -0.187 1.187 19 H -0.195 1.195 20 H -0.178 1.178 21 C -0.224 4.224 22 C -0.053 4.053 23 C -0.179 4.179 24 C -0.030 4.030 25 O -0.287 6.287 26 C 0.300 3.700 27 O -0.356 6.356 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.266 0.734 32 H 0.176 0.824 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.141 0.859 36 H 0.084 0.916 37 H 0.144 0.856 38 H 0.182 0.818 39 H 0.158 0.842 40 H 0.148 0.852 41 H 0.119 0.881 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.003 -26.105 11.486 28.955 hybrid contribution 0.193 1.127 -0.719 1.350 sum -4.810 -24.978 10.767 27.622 Atomic orbital electron populations 1.22089 0.91062 1.03872 1.04169 1.21669 0.97339 0.83371 0.94598 1.45664 1.53635 1.09706 1.26947 1.18727 0.80118 0.86645 0.81430 1.90877 1.38321 1.77909 1.36778 1.22750 1.07862 0.92325 1.03219 1.22148 0.92271 0.90352 0.96015 1.18766 1.05862 0.94144 0.98314 1.21300 0.96040 0.91601 0.97160 1.21191 1.05471 0.98457 1.01761 1.20199 0.92070 0.85099 0.94886 1.83880 1.67809 1.19453 1.41203 1.21876 1.31934 0.97463 0.97978 0.87854 1.26592 0.95190 0.97607 1.02317 1.70140 1.31425 1.18578 1.34789 0.84596 0.78506 0.77462 0.75754 1.18709 1.19491 1.17793 1.20438 1.07749 0.94283 0.99978 1.21292 0.93198 0.93560 0.97262 1.23406 1.00059 0.99507 0.94928 1.24636 0.98427 1.04617 0.75317 1.87090 1.67243 1.40213 1.34201 1.24156 0.75713 0.79316 0.90859 1.90775 1.55822 1.65769 1.23241 0.93267 0.89967 0.88494 0.73436 0.82403 0.86430 0.84245 0.85898 0.91568 0.85650 0.81846 0.84234 0.85208 0.88120 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.36 71.98 0.60 -1.77 16 2 C 0.12 1.68 0.97 3.56 0.00 1.68 16 3 N -0.70 -10.23 5.14 -427.43 -2.20 -12.43 16 4 C 0.54 13.26 7.15 86.32 0.62 13.88 16 5 O -0.56 -19.22 12.09 16.92 0.20 -19.02 16 6 C -0.24 -5.39 9.41 23.61 0.22 -5.17 16 7 C 0.01 0.33 9.45 23.82 0.23 0.56 16 8 C -0.17 -5.35 5.87 -20.13 -0.12 -5.47 16 9 C -0.04 -1.50 9.78 22.55 0.22 -1.28 16 10 C -0.25 -10.63 9.14 22.35 0.20 -10.43 16 11 C 0.13 6.17 6.66 22.72 0.15 6.33 16 12 O -0.22 -12.64 9.74 -20.23 -0.20 -12.83 16 13 C -0.42 -23.55 9.48 67.93 0.64 -22.90 16 14 H 0.10 5.37 5.18 -2.91 -0.02 5.36 16 15 C -0.02 -1.01 5.49 84.85 0.47 -0.54 16 16 N -0.91 -54.25 13.67 21.62 0.30 -53.95 16 17 Si 1.02 41.76 29.55 68.60 2.03 43.79 16 18 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 21 C -0.21 -8.06 9.97 22.34 0.22 -7.83 16 22 C -0.04 -1.08 9.40 22.55 0.21 -0.87 16 23 C -0.14 -0.23 6.51 31.64 0.21 -0.02 16 24 C 0.04 0.18 7.91 72.52 0.57 0.75 16 25 O -0.37 -6.77 11.06 -52.41 -0.58 -7.34 16 26 C 0.46 11.14 7.30 71.44 0.52 11.66 16 27 O -0.47 -17.13 15.63 28.92 0.45 -16.67 16 28 H 0.05 1.23 6.17 -2.39 -0.01 1.21 16 29 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.43 2.45 8.17 -92.71 -0.76 1.69 16 32 H 0.16 2.40 6.07 -2.91 -0.02 2.38 16 33 H 0.12 3.48 7.52 -2.91 -0.02 3.45 16 34 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 35 H 0.12 5.32 5.62 -2.91 -0.02 5.30 16 36 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 38 H 0.16 3.42 6.16 -2.91 -0.02 3.40 16 39 H 0.14 -0.66 7.64 -2.39 -0.02 -0.68 16 40 H 0.13 -0.29 7.81 -2.39 -0.02 -0.31 16 41 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.15 -0.30 8.14 -2.38 -0.02 -0.32 16 Total: -1.00 -87.22 358.40 5.31 -81.92 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.33 Total: 17.98 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 4.97 Total: -21.43 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -1.90 Total: -66.38 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -0.12 Total: -55.87 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -87.22 5.31 -81.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291468070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.506 kcal (2) G-P(sol) polarization free energy of solvation -87.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds