Wall clock time and date at job start Tue Mar 31 2020 16:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99925 * 2 1 4 4 C 1.53001 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46809 * 185.00403 * 4 3 2 6 6 N 1.46504 * 109.46976 * 65.00757 * 4 3 2 7 7 S 1.65592 * 120.00188 * 144.99754 * 6 4 3 8 8 O 1.42103 * 104.27879 * 181.06648 * 7 6 4 9 9 O 1.42098 * 104.27933 * 308.92676 * 7 6 4 10 10 C 1.81404 * 104.44996 * 64.99823 * 7 6 4 11 11 C 1.53000 * 109.47026 * 179.97438 * 10 7 6 12 12 C 1.52992 * 109.47220 * 299.99736 * 11 10 7 13 13 C 1.53000 * 109.47011 * 60.00189 * 11 10 7 14 14 C 1.50700 * 109.46976 * 179.97438 * 11 10 7 15 15 H 1.08000 * 120.00211 * 0.02562 * 14 11 10 16 16 C 1.37880 * 120.00304 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99391 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 120.00433 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46749 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47536 * 120.00020 * 18 16 14 21 21 H 1.48506 * 109.46855 * 240.00316 * 18 16 14 22 22 C 1.50696 * 109.47388 * 305.00147 * 4 3 2 23 23 C 1.34512 * 125.79261 * 259.99868 * 22 4 3 24 24 C 1.41379 * 106.84086 * 180.02562 * 23 22 4 25 25 C 1.34512 * 106.84332 * 0.02562 * 24 23 22 26 26 O 1.34301 * 108.41872 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47016 * 299.99665 * 1 2 3 29 29 H 1.08993 * 109.47244 * 59.99696 * 1 2 3 30 30 H 1.09001 * 109.46457 * 60.00151 * 3 2 1 31 31 H 1.08997 * 109.46975 * 300.00180 * 3 2 1 32 32 H 0.97004 * 119.99210 * 324.98918 * 6 4 3 33 33 H 1.09001 * 109.46770 * 300.00099 * 10 7 6 34 34 H 1.08999 * 109.47176 * 59.99999 * 10 7 6 35 35 H 1.09005 * 109.47102 * 60.00606 * 12 11 10 36 36 H 1.09000 * 109.47109 * 179.97438 * 12 11 10 37 37 H 1.08999 * 109.47303 * 300.00146 * 12 11 10 38 38 H 1.08996 * 109.47508 * 59.99951 * 13 11 10 39 39 H 1.09000 * 109.47111 * 179.97438 * 13 11 10 40 40 H 1.09002 * 109.46812 * 299.99348 * 13 11 10 41 41 H 0.97009 * 119.99710 * 179.97438 * 17 16 14 42 42 H 1.07996 * 126.57559 * 359.97438 * 23 22 4 43 43 H 1.08007 * 126.57604 * 180.02562 * 24 23 22 44 44 H 1.08004 * 125.79431 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9784 2.1766 0.0903 6 7 3.9767 0.5641 -1.2510 7 16 5.4020 1.0341 -1.9507 8 8 5.4857 0.2525 -3.1345 9 8 5.3115 2.4508 -2.0131 10 6 6.6772 0.5294 -0.7633 11 6 8.0567 0.9132 -1.3026 12 6 8.2962 0.2076 -2.6388 13 6 8.1210 2.4281 -1.5070 14 6 9.1160 0.4945 -0.3159 15 1 8.8337 0.0034 0.6036 16 6 10.4458 0.7373 -0.5875 17 7 10.7896 1.3349 -1.7075 18 14 11.7589 0.2177 0.6352 19 1 11.1158 -0.4291 1.8071 20 1 12.6871 -0.7429 -0.0135 21 1 12.5176 1.4128 1.0844 22 6 3.9715 0.3328 1.1648 23 6 4.4493 0.7877 2.3370 24 6 4.7314 -0.3468 3.1322 25 6 4.4097 -1.4270 2.3981 26 8 3.9497 -1.0093 1.2075 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.4338 -0.1221 -1.6697 33 1 6.5063 1.0318 0.1888 34 1 6.6317 -0.5499 -0.6181 35 1 7.5300 0.5109 -3.3524 36 1 9.2788 0.4813 -3.0232 37 1 8.2504 -0.8717 -2.4932 38 1 7.9504 2.9307 -0.5550 39 1 9.1039 2.7015 -1.8907 40 1 7.3548 2.7313 -2.2205 41 1 11.7252 1.5061 -1.8984 42 1 4.5911 1.8211 2.6167 43 1 5.1290 -0.3461 4.1364 44 1 4.5043 -2.4558 2.7131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295198091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:03 Heat of formation + Delta-G solvation = -98.294904 kcal Electronic energy + Delta-G solvation = -28363.659477 eV Core-core repulsion = 24410.717513 eV Total energy + Delta-G solvation = -3952.941964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.43263 -38.40333 -36.58156 -36.24917 -35.54628 -35.26367 -32.84827 -31.63843 -30.24399 -28.37108 -26.58517 -26.26514 -25.69304 -25.19785 -23.22784 -21.64762 -20.33838 -19.61230 -18.81772 -17.74583 -17.39602 -16.75330 -16.31760 -15.98971 -15.73239 -15.57539 -15.30663 -14.95591 -14.69505 -14.62335 -13.63235 -13.27961 -13.04210 -12.98961 -12.71682 -12.67701 -12.52089 -12.48047 -12.10396 -12.02632 -11.66110 -11.50882 -11.43833 -11.06821 -11.06054 -10.89748 -10.68342 -10.35568 -10.26649 -10.11117 -9.92937 -9.82047 -9.75450 -9.62442 -9.32883 -8.64728 -8.39378 -8.37834 -6.00856 -4.11974 0.85416 1.81580 2.69467 3.02982 3.20541 3.26514 3.34894 3.38036 3.50457 4.27573 4.39917 4.54440 4.62757 4.75121 4.97445 5.02411 5.11577 5.14984 5.18405 5.19845 5.24808 5.25823 5.44223 5.60872 5.75239 5.85949 5.89338 6.03189 6.14758 6.42759 6.57528 6.73891 6.82206 6.87721 6.92754 7.03470 7.12582 7.28551 7.34263 7.53060 7.71044 8.00414 8.12717 8.36198 8.86827 9.53110 11.00588 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.004575 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.108128 B = 6118.107542 C = 7353.270665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.058 3.942 4 C 0.237 3.763 5 H 0.134 0.866 6 N -1.118 6.118 7 S 2.589 3.411 8 O -0.961 6.961 9 O -0.965 6.965 10 C -0.575 4.575 11 C 0.083 3.917 12 C -0.164 4.164 13 C -0.163 4.163 14 C -0.497 4.497 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.895 3.105 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.025 4.025 23 C -0.204 4.204 24 C -0.213 4.213 25 C -0.040 4.040 26 O -0.152 6.152 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.420 0.580 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.027 0.973 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.095 0.905 40 H 0.027 0.973 41 H 0.261 0.739 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.249 -1.574 7.058 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.021 4.021 4 C 0.128 3.872 5 H 0.152 0.848 6 N -0.873 5.873 7 S 2.687 3.313 8 O -0.951 6.951 9 O -0.955 6.955 10 C -0.709 4.709 11 C 0.080 3.920 12 C -0.221 4.221 13 C -0.221 4.221 14 C -0.536 4.536 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.523 5.523 18 Si 0.723 3.277 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.078 4.078 23 C -0.224 4.224 24 C -0.232 4.232 25 C -0.108 4.108 26 O -0.046 6.046 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.254 0.746 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.045 0.955 36 H 0.114 0.886 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -17.945 -1.273 5.919 18.939 hybrid contribution 0.617 -0.685 1.534 1.790 sum -17.329 -1.958 7.453 18.965 Atomic orbital electron populations 1.22741 0.81005 1.02824 0.99903 1.87964 1.19550 1.26820 1.95393 1.22843 0.91570 0.85859 1.01789 1.19411 0.94161 0.94336 0.79317 0.84826 1.55920 1.41485 1.55120 1.34753 1.05807 0.74333 0.74843 0.76308 1.93559 1.85526 1.71650 1.44398 1.93537 1.85420 1.29830 1.86700 1.30495 1.14586 1.10959 1.14868 1.17933 0.86672 0.93134 0.94240 1.22272 1.03880 0.99201 0.96771 1.22270 1.03648 0.96656 0.99494 1.20970 0.90124 1.38609 1.03935 0.92281 1.24932 0.98472 0.94950 0.95414 1.69816 1.17115 1.41894 1.23438 0.86494 0.81668 0.78305 0.81267 1.19852 1.20994 1.20986 1.22698 1.05424 0.81742 0.97934 1.21614 1.06044 1.00524 0.94175 1.21757 1.07402 0.92090 1.01963 1.24056 1.02663 1.00072 0.84019 1.84059 1.64689 1.21564 1.34286 0.89604 0.94140 0.93995 0.91505 0.91195 0.74579 0.86479 0.86321 0.95461 0.88627 0.94478 0.94492 0.88647 0.95398 0.92864 0.83316 0.83622 0.78403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.20 9.79 -35.23 -0.34 -4.55 16 3 C 0.06 0.58 5.72 37.16 0.21 0.79 16 4 C 0.24 2.98 3.06 -69.08 -0.21 2.76 16 5 H 0.13 1.54 7.47 -51.93 -0.39 1.15 16 6 N -1.12 -16.25 5.33 -5.88 -0.03 -16.28 16 7 S 2.59 48.90 4.47 -107.50 -0.48 48.42 16 8 O -0.96 -20.70 15.70 -57.54 -0.90 -21.60 16 9 O -0.96 -19.79 15.01 -57.54 -0.86 -20.66 16 10 C -0.58 -11.65 4.66 37.16 0.17 -11.48 16 11 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 12 C -0.16 -4.10 7.78 37.15 0.29 -3.81 16 13 C -0.16 -4.01 7.77 37.16 0.29 -3.72 16 14 C -0.50 -13.18 8.01 -34.44 -0.28 -13.45 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 17 N -0.88 -24.25 9.35 55.43 0.52 -23.74 16 18 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.03 -0.34 4.97 -35.63 -0.18 -0.52 16 23 C -0.20 -2.61 10.80 -39.70 -0.43 -3.04 16 24 C -0.21 -2.62 10.91 -39.70 -0.43 -3.05 16 25 C -0.04 -0.48 12.09 29.41 0.36 -0.13 16 26 O -0.15 -2.16 10.52 5.71 0.06 -2.10 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.42 5.63 8.54 -34.47 -0.29 5.34 16 33 H 0.12 2.20 7.75 -51.92 -0.40 1.80 16 34 H 0.12 2.31 8.14 -51.92 -0.42 1.88 16 35 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 36 H 0.10 2.57 6.07 -51.93 -0.32 2.25 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 40 H 0.03 0.65 5.47 -51.93 -0.28 0.36 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 44 H 0.20 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -33.27 365.68 -7.30 -40.57 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.47 Total: 9.34 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 0.73 Total: -30.72 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.49 Total: -40.01 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -2.05 Total: -48.90 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 48.90 SS G_CDS: -0.48 Total: 48.42 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.27 -7.30 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295198091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.728 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds