Wall clock time and date at job start Tue Mar 31 2020 16:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99925 * 2 1 4 4 C 1.53001 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46809 * 185.00403 * 4 3 2 6 6 N 1.46504 * 109.46976 * 65.00757 * 4 3 2 7 7 S 1.65592 * 120.00188 * 144.99754 * 6 4 3 8 8 O 1.42103 * 104.27879 * 181.06648 * 7 6 4 9 9 O 1.42098 * 104.27933 * 308.92676 * 7 6 4 10 10 C 1.81404 * 104.44996 * 64.99823 * 7 6 4 11 11 C 1.53000 * 109.47026 * 179.97438 * 10 7 6 12 12 C 1.52992 * 109.47220 * 299.99736 * 11 10 7 13 13 C 1.53000 * 109.47011 * 60.00189 * 11 10 7 14 14 C 1.50700 * 109.46976 * 179.97438 * 11 10 7 15 15 H 1.08000 * 120.00211 * 0.02562 * 14 11 10 16 16 C 1.37880 * 120.00304 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99391 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 120.00433 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46749 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47536 * 120.00020 * 18 16 14 21 21 H 1.48506 * 109.46855 * 240.00316 * 18 16 14 22 22 C 1.50696 * 109.47388 * 305.00147 * 4 3 2 23 23 C 1.34512 * 125.79261 * 259.99868 * 22 4 3 24 24 C 1.41379 * 106.84086 * 180.02562 * 23 22 4 25 25 C 1.34512 * 106.84332 * 0.02562 * 24 23 22 26 26 O 1.34301 * 108.41872 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47016 * 299.99665 * 1 2 3 29 29 H 1.08993 * 109.47244 * 59.99696 * 1 2 3 30 30 H 1.09001 * 109.46457 * 60.00151 * 3 2 1 31 31 H 1.08997 * 109.46975 * 300.00180 * 3 2 1 32 32 H 0.97004 * 119.99210 * 324.98918 * 6 4 3 33 33 H 1.09001 * 109.46770 * 300.00099 * 10 7 6 34 34 H 1.08999 * 109.47176 * 59.99999 * 10 7 6 35 35 H 1.09005 * 109.47102 * 60.00606 * 12 11 10 36 36 H 1.09000 * 109.47109 * 179.97438 * 12 11 10 37 37 H 1.08999 * 109.47303 * 300.00146 * 12 11 10 38 38 H 1.08996 * 109.47508 * 59.99951 * 13 11 10 39 39 H 1.09000 * 109.47111 * 179.97438 * 13 11 10 40 40 H 1.09002 * 109.46812 * 299.99348 * 13 11 10 41 41 H 0.97009 * 119.99710 * 179.97438 * 17 16 14 42 42 H 1.07996 * 126.57559 * 359.97438 * 23 22 4 43 43 H 1.08007 * 126.57604 * 180.02562 * 24 23 22 44 44 H 1.08004 * 125.79431 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9784 2.1766 0.0903 6 7 3.9767 0.5641 -1.2510 7 16 5.4020 1.0341 -1.9507 8 8 5.4857 0.2525 -3.1345 9 8 5.3115 2.4508 -2.0131 10 6 6.6772 0.5294 -0.7633 11 6 8.0567 0.9132 -1.3026 12 6 8.2962 0.2076 -2.6388 13 6 8.1210 2.4281 -1.5070 14 6 9.1160 0.4945 -0.3159 15 1 8.8337 0.0034 0.6036 16 6 10.4458 0.7373 -0.5875 17 7 10.7896 1.3349 -1.7075 18 14 11.7589 0.2177 0.6352 19 1 11.1158 -0.4291 1.8071 20 1 12.6871 -0.7429 -0.0135 21 1 12.5176 1.4128 1.0844 22 6 3.9715 0.3328 1.1648 23 6 4.4493 0.7877 2.3370 24 6 4.7314 -0.3468 3.1322 25 6 4.4097 -1.4270 2.3981 26 8 3.9497 -1.0093 1.2075 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.4338 -0.1221 -1.6697 33 1 6.5063 1.0318 0.1888 34 1 6.6317 -0.5499 -0.6181 35 1 7.5300 0.5109 -3.3524 36 1 9.2788 0.4813 -3.0232 37 1 8.2504 -0.8717 -2.4932 38 1 7.9504 2.9307 -0.5550 39 1 9.1039 2.7015 -1.8907 40 1 7.3548 2.7313 -2.2205 41 1 11.7252 1.5061 -1.8984 42 1 4.5911 1.8211 2.6167 43 1 5.1290 -0.3461 4.1364 44 1 4.5043 -2.4558 2.7131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295198091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:58 Heat of formation + Delta-G solvation = -121.838664 kcal Electronic energy + Delta-G solvation = -28364.680411 eV Core-core repulsion = 24410.717513 eV Total energy + Delta-G solvation = -3953.962898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -43.37987 -39.20079 -38.16279 -38.13459 -36.96837 -36.49348 -33.81361 -33.62118 -31.27215 -29.20938 -28.26986 -27.68812 -27.24581 -26.96280 -24.10785 -22.59776 -21.42006 -21.27217 -20.33001 -18.94511 -18.66373 -17.88476 -17.68221 -17.15381 -16.91953 -16.78203 -16.65411 -16.46975 -15.99943 -15.71817 -15.04690 -14.72236 -14.46120 -14.42376 -14.12864 -13.85753 -13.76057 -13.60764 -13.36357 -13.16322 -13.07652 -12.91577 -12.89435 -12.77039 -12.60565 -12.50623 -12.21736 -12.19615 -12.12141 -11.97166 -11.57273 -11.44658 -10.86289 -10.72297 -10.61266 -10.47682 -10.41248 -9.33156 -8.02459 -6.20226 -0.66830 0.85931 1.42499 1.45563 1.55229 1.69526 1.88214 2.19131 2.44528 2.76754 2.79788 3.19344 3.26030 3.64016 3.79594 3.94569 4.08623 4.18498 4.26634 4.28593 4.34815 4.49352 4.59413 4.59529 4.59702 4.74127 4.86411 4.87099 4.91398 4.98366 4.99935 5.08250 5.10242 5.25656 5.38426 5.51500 5.65489 5.68413 5.97799 5.98597 6.12265 6.20999 6.34882 6.35460 6.83682 7.47594 8.97677 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.004575 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.108128 B = 6118.107542 C = 7353.270665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.059 3.941 4 C 0.226 3.774 5 H 0.143 0.857 6 N -1.103 6.103 7 S 2.613 3.387 8 O -0.989 6.989 9 O -0.980 6.980 10 C -0.578 4.578 11 C 0.071 3.929 12 C -0.160 4.160 13 C -0.158 4.158 14 C -0.512 4.512 15 H 0.058 0.942 16 C 0.019 3.981 17 N -0.907 5.907 18 Si 0.953 3.047 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.040 4.040 23 C -0.213 4.213 24 C -0.226 4.226 25 C -0.047 4.047 26 O -0.170 6.170 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.427 0.573 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.261 0.739 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.533 -1.771 8.569 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.019 4.019 4 C 0.118 3.882 5 H 0.161 0.839 6 N -0.861 5.861 7 S 2.710 3.290 8 O -0.980 6.980 9 O -0.970 6.970 10 C -0.710 4.710 11 C 0.069 3.931 12 C -0.218 4.218 13 C -0.216 4.216 14 C -0.551 4.551 15 H 0.076 0.924 16 C -0.180 4.180 17 N -0.546 5.546 18 Si 0.779 3.221 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.207 1.207 22 C -0.092 4.092 23 C -0.233 4.233 24 C -0.245 4.245 25 C -0.115 4.115 26 O -0.065 6.065 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.263 0.737 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.182 0.818 43 H 0.181 0.819 44 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -19.230 -1.473 7.438 20.671 hybrid contribution 0.932 -0.642 1.103 1.580 sum -18.298 -2.115 8.541 20.303 Atomic orbital electron populations 1.22904 0.79439 1.03620 1.00976 1.87925 1.21314 1.27384 1.95633 1.22888 0.89621 0.85969 1.03448 1.19784 0.96200 0.94373 0.77838 0.83928 1.55481 1.39633 1.55409 1.35622 1.04816 0.74586 0.74113 0.75442 1.93514 1.86249 1.72191 1.46017 1.93512 1.85847 1.30808 1.86836 1.30415 1.13124 1.11545 1.15957 1.17921 0.88789 0.92783 0.93615 1.22207 1.02762 0.99261 0.97528 1.22186 1.02467 0.97123 0.99805 1.21247 0.90994 1.38590 1.04277 0.92388 1.25639 1.00405 0.95084 0.96898 1.69945 1.17384 1.42539 1.24708 0.85585 0.79220 0.77866 0.79429 1.19191 1.20991 1.20749 1.22846 1.06195 0.81721 0.98467 1.21952 1.05567 1.01584 0.94175 1.22092 1.07583 0.92019 1.02855 1.24728 1.01830 1.01554 0.83368 1.84045 1.65200 1.22004 1.35277 0.89057 0.92964 0.92986 0.89222 0.90062 0.73706 0.85126 0.85770 0.94943 0.90821 0.94480 0.93881 0.90969 0.94743 0.92921 0.81799 0.81938 0.75609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -8.15 9.79 -148.98 -1.46 -9.61 16 3 C 0.06 1.05 5.72 71.98 0.41 1.46 16 4 C 0.23 5.26 3.06 44.24 0.14 5.39 16 5 H 0.14 3.01 7.47 -2.39 -0.02 2.99 16 6 N -1.10 -30.46 5.33 -172.52 -0.92 -31.38 16 7 S 2.61 96.34 4.47 -56.49 -0.25 96.08 16 8 O -0.99 -42.15 15.70 -127.65 -2.00 -44.15 16 9 O -0.98 -39.13 15.01 -127.65 -1.92 -41.05 16 10 C -0.58 -22.94 4.66 71.98 0.34 -22.61 16 11 C 0.07 3.47 0.52 -52.93 -0.03 3.45 16 12 C -0.16 -8.10 7.78 71.98 0.56 -7.54 16 13 C -0.16 -7.80 7.77 71.98 0.56 -7.24 16 14 C -0.51 -27.01 8.01 25.60 0.21 -26.81 16 15 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 16 C 0.02 1.02 5.15 84.66 0.44 1.45 16 17 N -0.91 -50.31 9.35 21.45 0.20 -50.11 16 18 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 C -0.04 -1.01 4.97 24.83 0.12 -0.88 16 23 C -0.21 -5.06 10.80 22.19 0.24 -4.82 16 24 C -0.23 -5.13 10.91 22.19 0.24 -4.88 16 25 C -0.05 -1.06 12.09 66.97 0.81 -0.25 16 26 O -0.17 -4.58 10.52 -2.47 -0.03 -4.61 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.43 10.87 8.54 -96.74 -0.83 10.04 16 33 H 0.13 4.75 7.75 -2.39 -0.02 4.73 16 34 H 0.12 4.74 8.14 -2.39 -0.02 4.72 16 35 H 0.03 1.56 5.46 -2.38 -0.01 1.55 16 36 H 0.07 4.04 6.07 -2.39 -0.01 4.03 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 40 H 0.03 1.61 5.47 -2.39 -0.01 1.59 16 41 H 0.26 13.84 8.31 -92.70 -0.77 13.07 16 42 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 43 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 44 H 0.23 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -70.14 365.68 1.11 -69.02 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.18 Total: 32.96 kcal Atomic # 6 Polarization: -66.96 SS G_CDS: 5.28 Total: -61.68 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -0.72 Total: -81.49 kcal Atomic # 8 Polarization: -94.01 SS G_CDS: -5.40 Total: -99.42 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 96.34 SS G_CDS: -0.25 Total: 96.08 kcal Total: -70.14 1.11 -69.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295198091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.815 kcal (2) G-P(sol) polarization free energy of solvation -70.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds