Wall clock time and date at job start Tue Mar 31 2020 16:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34512 * 125.79226 * 2 1 4 4 C 1.41379 * 106.84086 * 179.97438 * 3 2 1 5 5 C 1.34512 * 106.84332 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.79090 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47393 * 340.02245 * 6 5 4 8 8 O 1.42900 * 109.47234 * 220.02126 * 6 5 4 9 9 C 1.53004 * 109.47466 * 100.02284 * 6 5 4 10 10 N 1.46497 * 109.47164 * 185.00303 * 9 6 5 11 11 S 1.65595 * 120.00045 * 165.00254 * 10 9 6 12 12 O 1.42103 * 104.27925 * 181.06700 * 11 10 9 13 13 O 1.42103 * 104.27720 * 308.92147 * 11 10 9 14 14 C 1.81400 * 104.45213 * 64.99449 * 11 10 9 15 15 C 1.53006 * 109.47214 * 180.02562 * 14 11 10 16 16 C 1.53004 * 109.46834 * 300.00049 * 15 14 11 17 17 C 1.53000 * 109.46833 * 59.99778 * 15 14 11 18 18 C 1.50693 * 109.47141 * 180.02562 * 15 14 11 19 19 H 1.08001 * 119.99700 * 359.97438 * 18 15 14 20 20 C 1.37875 * 119.99999 * 179.97438 * 18 15 14 21 21 N 1.31512 * 119.99878 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 120.00055 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.47147 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47056 * 119.99971 * 22 20 18 25 25 H 1.48497 * 109.47534 * 240.00384 * 22 20 18 26 26 O 1.34301 * 108.41872 * 359.97438 * 5 4 3 27 27 H 1.09004 * 109.47797 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47078 * 299.99936 * 1 2 3 29 29 H 1.09005 * 109.47246 * 59.99506 * 1 2 3 30 30 H 1.07997 * 126.57601 * 0.02562 * 3 2 1 31 31 H 1.08007 * 126.57604 * 180.02562 * 4 3 2 32 32 H 0.96694 * 114.00041 * 300.00344 * 8 6 5 33 33 H 1.09000 * 109.46531 * 304.99901 * 9 6 5 34 34 H 1.08999 * 109.46986 * 64.99937 * 9 6 5 35 35 H 0.97007 * 120.00269 * 344.99495 * 10 9 6 36 36 H 1.09000 * 109.47118 * 299.99955 * 14 11 10 37 37 H 1.08997 * 109.47176 * 60.00144 * 14 11 10 38 38 H 1.08998 * 109.47153 * 60.00263 * 16 15 14 39 39 H 1.08996 * 109.46663 * 180.02562 * 16 15 14 40 40 H 1.08997 * 109.47117 * 299.99832 * 16 15 14 41 41 H 1.09000 * 109.47323 * 60.00396 * 17 15 14 42 42 H 1.09010 * 109.46663 * 179.97438 * 17 15 14 43 43 H 1.08998 * 109.47687 * 300.00063 * 17 15 14 44 44 H 0.97003 * 119.99881 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6319 0.0006 5 6 3.5813 -0.7123 0.0004 6 6 4.7705 -1.6380 0.0014 7 1 5.6508 -1.0990 -0.3488 8 8 4.5134 -2.7446 -0.8654 9 6 5.0174 -2.1496 1.4220 10 7 6.2421 -2.9531 1.4457 11 16 6.9604 -3.3254 2.8906 12 8 8.1108 -4.0761 2.5270 13 8 7.0814 -2.0747 3.5543 14 6 5.7528 -4.3814 3.7376 15 6 6.3066 -4.7963 5.1022 16 6 7.6130 -5.5690 4.9089 17 6 6.5726 -3.5477 5.9456 18 6 5.3038 -5.6740 5.8055 19 1 4.3651 -5.9118 5.3273 20 6 5.5845 -6.1735 7.0596 21 7 6.7274 -5.8835 7.6421 22 14 4.3411 -7.2609 7.9318 23 1 3.1445 -7.4345 7.0696 24 1 4.9498 -8.5875 8.2058 25 1 3.9406 -6.6259 9.2130 26 8 2.2924 -1.0894 0.0002 27 1 -0.3635 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.9665 2.1203 0.0004 31 1 4.5212 1.2433 0.0012 32 1 3.7421 -3.2706 -0.6136 33 1 5.1254 -1.3026 2.0995 34 1 4.1741 -2.7632 1.7389 35 1 6.6324 -3.2671 0.6149 36 1 4.8223 -3.8307 3.8757 37 1 5.5630 -5.2706 3.1365 38 1 8.3386 -4.9344 4.4000 39 1 8.0072 -5.8649 5.8810 40 1 7.4235 -6.4584 4.3080 41 1 5.6420 -2.9972 6.0833 42 1 6.9667 -3.8434 6.9180 43 1 7.2982 -2.9132 5.4367 44 1 6.9251 -6.2352 8.5243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295240266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:48 Heat of formation + Delta-G solvation = -113.893130 kcal Electronic energy + Delta-G solvation = -27070.028808 eV Core-core repulsion = 23116.410455 eV Total energy + Delta-G solvation = -3953.618354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -42.90205 -38.13211 -36.55412 -36.29029 -35.34261 -34.51790 -33.45614 -32.45667 -31.68218 -29.33764 -26.66575 -25.95560 -25.72757 -25.23799 -22.98355 -22.11936 -20.52958 -19.63729 -18.87459 -17.99725 -17.48842 -16.65556 -16.25271 -15.95177 -15.86835 -15.38353 -15.21691 -14.83158 -14.55726 -14.37876 -13.62022 -13.53536 -13.35593 -13.14698 -13.08800 -13.03673 -12.82024 -12.52367 -12.21321 -12.09849 -11.90920 -11.87662 -11.45941 -11.14614 -11.09491 -10.93951 -10.73669 -10.62577 -10.37952 -10.29449 -10.15477 -10.12232 -9.70064 -9.66445 -9.32935 -8.69916 -8.57247 -8.41948 -6.05040 -4.17050 0.81392 1.38138 2.31396 2.50607 3.17241 3.23769 3.32281 3.34705 4.01620 4.16012 4.28550 4.36346 4.42893 4.59352 4.71793 4.77761 4.83545 5.03843 5.09824 5.20329 5.28910 5.33405 5.44379 5.51647 5.60660 5.67060 5.73581 5.82431 5.88168 6.24260 6.35704 6.68710 6.78356 6.83573 6.89316 7.00199 7.08786 7.21982 7.30361 7.49086 7.66510 7.96989 8.08228 8.31475 8.81667 9.48522 10.96307 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.003244 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.853496 B = 8628.251343 C = 9820.001733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.008 4.008 3 C -0.214 4.214 4 C -0.189 4.189 5 C -0.052 4.052 6 C 0.193 3.807 7 H 0.135 0.865 8 O -0.547 6.547 9 C 0.086 3.914 10 N -1.126 6.126 11 S 2.594 3.406 12 O -0.962 6.962 13 O -0.964 6.964 14 C -0.582 4.582 15 C 0.082 3.918 16 C -0.164 4.164 17 C -0.164 4.164 18 C -0.502 4.502 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.883 5.883 22 Si 0.896 3.104 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.283 1.283 26 O -0.170 6.170 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.384 0.616 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.416 0.584 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.028 0.972 39 H 0.095 0.905 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 10.997 -15.841 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.059 4.059 3 C -0.233 4.233 4 C -0.208 4.208 5 C -0.103 4.103 6 C 0.132 3.868 7 H 0.153 0.847 8 O -0.353 6.353 9 C -0.042 4.042 10 N -0.884 5.884 11 S 2.692 3.308 12 O -0.952 6.952 13 O -0.954 6.954 14 C -0.716 4.716 15 C 0.080 3.920 16 C -0.222 4.222 17 C -0.222 4.222 18 C -0.541 4.541 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.724 3.276 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.209 1.209 26 O -0.067 6.067 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.233 0.767 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.250 0.750 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.047 0.953 39 H 0.114 0.886 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.114 0.886 43 H 0.047 0.953 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.407 11.285 -15.556 20.977 hybrid contribution -1.642 -0.943 0.483 1.954 sum -10.048 10.342 -15.073 20.860 Atomic orbital electron populations 1.20334 0.84962 1.04208 1.03646 1.22516 0.94064 0.84092 1.05190 1.21572 0.92570 0.99572 1.09557 1.21634 0.98582 0.93634 1.06939 1.23085 0.83525 0.95376 1.08278 1.20661 0.91330 0.84773 0.90072 0.84713 1.86590 1.52819 1.42098 1.53774 1.21966 0.87738 0.96569 0.97886 1.55794 1.38743 1.67918 1.25923 1.05626 0.76227 0.75908 0.73025 1.93562 1.46455 1.73491 1.81710 1.93540 1.86029 1.41925 1.73878 1.30525 1.15320 1.13597 1.12114 1.17936 0.94303 0.94244 0.85560 1.22279 0.96896 0.99406 1.03617 1.22277 0.99510 0.95901 1.04462 1.20978 1.02148 1.29730 1.01263 0.92274 1.24942 0.95462 0.96202 0.97172 1.69811 1.22282 1.44652 1.15376 0.86478 0.81310 0.80293 0.79543 1.19859 1.20935 1.20945 1.83916 1.15976 1.35238 1.71554 0.90447 0.89476 0.89661 0.83298 0.83053 0.76717 0.88718 0.90912 0.74962 0.86583 0.86174 0.95349 0.88618 0.94429 0.94522 0.88637 0.95287 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.42 36.00 0.38 -0.06 16 2 C -0.01 -0.08 7.32 -35.63 -0.26 -0.34 16 3 C -0.21 -2.00 10.81 -39.70 -0.43 -2.43 16 4 C -0.19 -1.89 10.80 -39.70 -0.43 -2.32 16 5 C -0.05 -0.54 6.18 -35.63 -0.22 -0.77 16 6 C 0.19 1.89 3.52 -27.88 -0.10 1.79 16 7 H 0.14 1.18 8.13 -51.93 -0.42 0.76 16 8 O -0.55 -5.37 13.13 -37.33 -0.49 -5.86 16 9 C 0.09 0.97 5.75 -4.04 -0.02 0.95 16 10 N -1.13 -14.78 5.85 -10.61 -0.06 -14.84 16 11 S 2.59 46.97 4.49 -107.50 -0.48 46.49 16 12 O -0.96 -19.98 15.70 -57.54 -0.90 -20.89 16 13 O -0.96 -19.79 15.12 -57.54 -0.87 -20.66 16 14 C -0.58 -11.14 5.01 37.16 0.19 -10.95 16 15 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 16 C -0.16 -4.04 7.77 37.16 0.29 -3.75 16 17 C -0.16 -4.01 7.78 37.16 0.29 -3.72 16 18 C -0.50 -13.10 8.01 -34.44 -0.28 -13.38 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.70 5.15 -17.82 -0.09 1.60 16 21 N -0.88 -24.03 9.35 55.43 0.52 -23.51 16 22 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 O -0.17 -1.84 10.58 3.62 0.04 -1.81 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.38 2.82 8.97 45.56 0.41 3.23 16 33 H 0.09 1.12 7.69 -51.93 -0.40 0.72 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.42 4.83 8.47 -34.47 -0.29 4.54 16 36 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 37 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 38 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 39 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.10 2.52 6.07 -51.92 -0.32 2.21 16 43 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 44 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -33.50 367.77 -8.17 -41.67 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.67 Total: 9.82 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: -0.77 Total: -31.48 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.46 Total: -38.35 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: -2.22 Total: -49.21 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 46.97 SS G_CDS: -0.48 Total: 46.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.50 -8.17 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295240266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.220 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds