Wall clock time and date at job start Tue Mar 31 2020 16:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34511 * 125.78934 * 2 1 4 4 C 1.41374 * 106.84032 * 180.02562 * 3 2 1 5 5 C 1.34512 * 106.84287 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.79126 * 180.02562 * 5 4 3 7 7 H 1.08994 * 109.47208 * 24.99777 * 6 5 4 8 8 O 1.42894 * 109.47252 * 145.00309 * 6 5 4 9 9 C 1.53007 * 109.46850 * 265.00216 * 6 5 4 10 10 N 1.46504 * 109.46844 * 180.02562 * 9 6 5 11 11 S 1.65600 * 119.99852 * 164.72419 * 10 9 6 12 12 O 1.42102 * 104.27497 * 181.34417 * 11 10 9 13 13 O 1.42097 * 104.27553 * 309.19941 * 11 10 9 14 14 C 1.81398 * 104.45017 * 65.27294 * 11 10 9 15 15 C 1.52998 * 109.47181 * 179.97438 * 14 11 10 16 16 C 1.53001 * 109.47423 * 300.00514 * 15 14 11 17 17 C 1.53006 * 109.46713 * 60.00324 * 15 14 11 18 18 C 1.50698 * 109.46999 * 179.97438 * 15 14 11 19 19 H 1.07999 * 120.00430 * 357.69784 * 18 15 14 20 20 C 1.37881 * 119.99762 * 177.69736 * 18 15 14 21 21 N 1.31515 * 119.99917 * 6.58445 * 20 18 15 22 22 Si 1.86804 * 119.99978 * 186.58264 * 20 18 15 23 23 H 1.48500 * 109.46950 * 84.99479 * 22 20 18 24 24 H 1.48497 * 109.46997 * 204.99597 * 22 20 18 25 25 H 1.48506 * 109.46924 * 324.99500 * 22 20 18 26 26 O 1.34299 * 108.41818 * 0.26576 * 5 4 3 27 27 H 1.08998 * 109.47028 * 90.00794 * 1 2 3 28 28 H 1.09006 * 109.47015 * 210.00244 * 1 2 3 29 29 H 1.09004 * 109.47117 * 330.00530 * 1 2 3 30 30 H 1.08001 * 126.57999 * 0.02562 * 3 2 1 31 31 H 1.08002 * 126.58168 * 180.02562 * 4 3 2 32 32 H 0.96701 * 114.00274 * 59.99723 * 8 6 5 33 33 H 1.08990 * 109.47348 * 60.00067 * 9 6 5 34 34 H 1.08994 * 109.46856 * 299.99776 * 9 6 5 35 35 H 0.97001 * 120.00057 * 344.99463 * 10 9 6 36 36 H 1.08996 * 109.47345 * 300.00221 * 14 11 10 37 37 H 1.09004 * 109.46784 * 59.99833 * 14 11 10 38 38 H 1.08999 * 109.47291 * 66.66390 * 16 15 14 39 39 H 1.08995 * 109.46991 * 186.66775 * 16 15 14 40 40 H 1.09005 * 109.46773 * 306.66684 * 16 15 14 41 41 H 1.08996 * 109.46979 * 59.99898 * 17 15 14 42 42 H 1.08999 * 109.46820 * 180.02562 * 17 15 14 43 43 H 1.08998 * 109.46770 * 299.99803 * 17 15 14 44 44 H 0.97006 * 119.99873 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7706 -1.6379 -0.0003 7 1 5.6294 -1.1260 0.4338 8 8 4.4687 -2.8012 0.7726 9 6 5.0957 -2.0505 -1.4373 10 7 6.2514 -2.9509 -1.4372 11 16 6.5993 -3.8519 -2.7824 12 8 7.7413 -4.6110 -2.4100 13 8 5.3703 -4.4879 -3.1055 14 6 7.0340 -2.6269 -4.0477 15 6 7.3806 -3.3440 -5.3540 16 6 8.5677 -4.2810 -5.1221 17 6 6.1733 -4.1573 -5.8251 18 6 7.7412 -2.3263 -6.4053 19 1 7.6889 -1.2720 -6.1768 20 6 8.1379 -2.7411 -7.6590 21 7 8.0782 -4.0152 -7.9795 22 14 8.7601 -1.4933 -8.9022 23 1 10.2084 -1.2525 -8.6794 24 1 8.5509 -2.0168 -10.2760 25 1 8.0155 -0.2187 -8.7393 26 8 2.2925 -1.0894 -0.0056 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.9666 2.1204 0.0004 31 1 4.5212 1.2433 -0.0004 32 1 3.7133 -3.3071 0.4432 33 1 5.3261 -1.1633 -2.0269 34 1 4.2369 -2.5624 -1.8714 35 1 6.8106 -3.0223 -0.6478 36 1 6.1885 -1.9591 -4.2126 37 1 7.8943 -2.0477 -3.7121 38 1 8.2690 -5.0867 -4.4514 39 1 8.8900 -4.7017 -6.0745 40 1 9.3898 -3.7221 -4.6749 41 1 5.3277 -3.4898 -5.9903 42 1 6.4204 -4.6686 -6.7555 43 1 5.9121 -4.8934 -5.0648 44 1 8.3576 -4.3070 -8.8614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295240271.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:59 Heat of formation + Delta-G solvation = -139.193572 kcal Electronic energy + Delta-G solvation = -27065.464902 eV Core-core repulsion = 23110.749439 eV Total energy + Delta-G solvation = -3954.715463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.60123 -38.93391 -38.12555 -38.07163 -36.89407 -35.50736 -34.14751 -33.63942 -33.09528 -30.08020 -28.32176 -27.69292 -27.25312 -26.67803 -23.77871 -22.81484 -21.44673 -21.16993 -20.27144 -18.87228 -18.82278 -17.93101 -17.52323 -17.01881 -17.00272 -16.64078 -16.49039 -16.33471 -15.61512 -15.41951 -14.96223 -14.67544 -14.43125 -14.41141 -14.01284 -13.80736 -13.77744 -13.75521 -13.63677 -13.41588 -13.04016 -12.95981 -12.84524 -12.77831 -12.75280 -12.58227 -12.48620 -12.21233 -12.14351 -11.95015 -11.56936 -11.46503 -11.38253 -10.83573 -10.74842 -10.40260 -10.34906 -9.26989 -8.03477 -6.21601 -0.62762 0.67136 1.44839 1.46598 1.54395 1.61577 1.76447 2.02571 2.44496 2.85834 3.18640 3.29975 3.32511 3.53211 3.63282 3.94435 4.00735 4.08736 4.13675 4.18807 4.43883 4.52321 4.59950 4.67819 4.71790 4.75612 4.85660 4.86538 4.87518 4.90420 4.99465 5.08174 5.09048 5.24399 5.38841 5.49620 5.61800 5.64927 5.97494 6.08175 6.12209 6.14940 6.34687 6.54002 6.83295 7.46590 8.96239 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.003137 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.511228 B = 8924.948002 C = 9974.282282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.022 4.022 3 C -0.227 4.227 4 C -0.194 4.194 5 C -0.070 4.070 6 C 0.200 3.800 7 H 0.155 0.845 8 O -0.559 6.559 9 C 0.078 3.922 10 N -1.106 6.106 11 S 2.616 3.384 12 O -0.991 6.991 13 O -0.992 6.992 14 C -0.586 4.586 15 C 0.069 3.931 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.518 4.518 19 H 0.065 0.935 20 C 0.018 3.982 21 N -0.907 5.907 22 Si 0.954 3.046 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.267 1.267 26 O -0.189 6.189 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.169 0.831 31 H 0.171 0.829 32 H 0.391 0.609 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.426 0.574 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.028 0.972 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.031 0.969 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.534 11.216 17.234 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.072 4.072 3 C -0.246 4.246 4 C -0.213 4.213 5 C -0.121 4.121 6 C 0.139 3.861 7 H 0.173 0.827 8 O -0.365 6.365 9 C -0.049 4.049 10 N -0.868 5.868 11 S 2.713 3.287 12 O -0.982 6.982 13 O -0.982 6.982 14 C -0.719 4.719 15 C 0.067 3.933 16 C -0.217 4.217 17 C -0.218 4.218 18 C -0.558 4.558 19 H 0.083 0.917 20 C -0.182 4.182 21 N -0.546 5.546 22 Si 0.780 3.220 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.191 1.191 26 O -0.086 6.086 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.127 0.873 30 H 0.186 0.814 31 H 0.189 0.811 32 H 0.240 0.760 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.263 0.737 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.267 10.044 17.253 22.923 hybrid contribution 0.328 0.907 -1.207 1.545 sum -10.939 10.951 16.045 22.295 Atomic orbital electron populations 1.20501 0.82832 1.05252 1.04567 1.23257 0.95539 0.83890 1.04497 1.21944 0.92549 1.00500 1.09578 1.21970 0.99569 0.93506 1.06290 1.23251 0.83617 0.95808 1.09398 1.20697 0.91486 0.83562 0.90364 0.82742 1.86540 1.55227 1.39123 1.55615 1.22215 0.88685 0.95003 0.99012 1.55206 1.39242 1.61201 1.31125 1.04666 0.73307 0.75905 0.74798 1.93520 1.53148 1.69244 1.82251 1.93499 1.46286 1.73868 1.84534 1.30472 1.12244 1.16184 1.13009 1.17916 0.92399 0.93245 0.89715 1.22163 0.99430 0.98516 1.01578 1.22244 0.97558 0.99305 1.02717 1.21304 1.45328 0.92831 0.96287 0.91692 1.25684 0.95728 0.96887 0.99892 1.69958 1.47567 1.15771 1.21274 0.85637 0.78816 0.79523 0.78040 1.20246 1.21452 1.19135 1.83907 1.16532 1.36255 1.71935 0.89119 0.90148 0.87279 0.81385 0.81146 0.75978 0.88070 0.90560 0.73740 0.84489 0.84028 0.95281 0.91188 0.93744 0.94214 0.90924 0.95014 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.42 71.24 0.74 -0.01 16 2 C -0.02 -0.39 7.32 24.83 0.18 -0.20 16 3 C -0.23 -3.76 10.81 22.19 0.24 -3.52 16 4 C -0.19 -3.33 10.81 22.19 0.24 -3.09 16 5 C -0.07 -1.36 6.20 24.83 0.15 -1.20 16 6 C 0.20 3.50 3.52 29.85 0.10 3.60 16 7 H 0.16 1.97 8.14 -2.39 -0.02 1.95 16 8 O -0.56 -11.32 13.18 -144.55 -1.91 -13.23 16 9 C 0.08 1.58 5.79 86.38 0.50 2.08 16 10 N -1.11 -26.64 5.75 -187.49 -1.08 -27.72 16 11 S 2.62 91.73 4.49 -56.49 -0.25 91.47 16 12 O -0.99 -40.48 15.84 -127.65 -2.02 -42.50 16 13 O -0.99 -40.45 15.11 -127.65 -1.93 -42.38 16 14 C -0.59 -21.26 5.02 71.98 0.36 -20.90 16 15 C 0.07 3.29 0.52 -52.93 -0.03 3.26 16 16 C -0.16 -7.82 7.58 71.98 0.55 -7.28 16 17 C -0.16 -7.93 7.79 71.98 0.56 -7.37 16 18 C -0.52 -26.58 8.01 25.60 0.20 -26.38 16 19 H 0.06 3.17 7.75 -2.91 -0.02 3.15 16 20 C 0.02 0.92 5.09 84.66 0.43 1.35 16 21 N -0.91 -50.04 9.39 21.45 0.20 -49.84 16 22 Si 0.95 41.65 29.54 68.60 2.03 43.68 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 26 O -0.19 -4.05 10.52 2.02 0.02 -4.03 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 32 H 0.39 6.81 8.93 -74.06 -0.66 6.15 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.75 7.68 -2.39 -0.02 1.74 16 35 H 0.43 8.70 8.62 -96.74 -0.83 7.86 16 36 H 0.14 4.34 8.14 -2.39 -0.02 4.32 16 37 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 38 H 0.03 1.37 5.96 -2.39 -0.01 1.35 16 39 H 0.07 3.77 5.99 -2.39 -0.01 3.76 16 40 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 3.94 6.01 -2.39 -0.01 3.93 16 43 H 0.03 1.50 5.46 -2.39 -0.01 1.48 16 44 H 0.26 13.83 8.31 -92.70 -0.77 13.06 16 Total: -1.00 -71.85 368.11 -1.16 -73.02 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.46 Total: 31.19 kcal Atomic # 6 Polarization: -63.90 SS G_CDS: 4.24 Total: -59.66 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -0.88 Total: -77.55 kcal Atomic # 8 Polarization: -96.31 SS G_CDS: -5.83 Total: -102.14 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 91.73 SS G_CDS: -0.25 Total: 91.47 kcal Total: -71.85 -1.16 -73.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295240271.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.176 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds