Wall clock time and date at job start Tue Mar 31 2020 18:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47495 * 2 1 4 4 C 1.46503 * 119.99595 * 274.99740 * 3 2 1 5 5 C 1.50696 * 109.47064 * 294.82031 * 4 3 2 6 6 H 1.08003 * 120.00157 * 4.49699 * 5 4 3 7 7 C 1.37878 * 120.00321 * 184.49309 * 5 4 3 8 8 N 1.31521 * 119.99620 * 9.80859 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 189.81465 * 7 5 4 10 10 H 1.48504 * 109.47318 * 89.99063 * 9 7 5 11 11 H 1.48498 * 109.47238 * 209.99463 * 9 7 5 12 12 H 1.48501 * 109.46975 * 329.99459 * 9 7 5 13 13 S 1.65599 * 120.00409 * 94.99192 * 3 2 1 14 14 O 1.42097 * 106.40275 * 335.50880 * 13 3 2 15 15 O 1.42096 * 106.40351 * 202.58326 * 13 3 2 16 16 N 1.65602 * 107.21465 * 89.04614 * 13 3 2 17 17 C 1.46504 * 120.00290 * 68.35196 * 16 13 3 18 18 H 1.09002 * 109.46561 * 352.76449 * 17 16 13 19 19 C 1.52995 * 109.47011 * 112.76206 * 17 16 13 20 20 C 1.50700 * 109.47073 * 232.76418 * 17 16 13 21 21 C 1.38227 * 120.40667 * 321.90317 * 20 17 16 22 22 N 1.31849 * 120.82189 * 179.72806 * 21 20 17 23 23 C 1.31872 * 121.74406 * 0.52932 * 22 21 20 24 24 C 1.38417 * 120.73122 * 359.76283 * 23 22 21 25 25 F 1.35102 * 120.44458 * 179.97438 * 24 23 22 26 26 C 1.38590 * 120.39907 * 142.17515 * 20 17 16 27 27 H 1.08996 * 109.47191 * 300.00497 * 1 2 3 28 28 H 1.08999 * 109.46532 * 60.00466 * 1 2 3 29 29 H 1.08997 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47361 * 239.99169 * 2 1 3 31 31 H 1.09008 * 109.46500 * 119.99302 * 2 1 3 32 32 H 1.09003 * 109.47464 * 54.81899 * 4 3 2 33 33 H 1.08999 * 109.47314 * 174.82119 * 4 3 2 34 34 H 0.97002 * 119.99745 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99978 * 248.35236 * 16 13 3 36 36 H 1.09002 * 109.47260 * 60.00670 * 19 17 16 37 37 H 1.09001 * 109.46942 * 180.02562 * 19 17 16 38 38 H 1.09001 * 109.47491 * 300.00217 * 19 17 16 39 39 H 1.08001 * 119.59307 * 359.97438 * 21 20 17 40 40 H 1.08006 * 119.63319 * 179.72861 * 23 22 21 41 41 H 1.07992 * 120.80731 * 0.02562 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.1584 2.1085 -1.2640 5 6 3.2209 1.4513 -2.1067 6 1 3.6887 0.5378 -1.7703 7 6 3.5958 2.0160 -3.3074 8 7 3.1735 3.2195 -3.6282 9 14 4.7033 1.0718 -4.4784 10 1 3.8701 0.2622 -5.4034 11 1 5.5257 2.0286 -5.2617 12 1 5.5947 0.1739 -3.7009 13 16 2.4122 2.1202 1.4286 14 8 1.6696 1.4562 2.4419 15 8 2.3277 3.5190 1.1934 16 7 4.0077 1.7918 1.7269 17 6 5.0472 2.3723 0.8732 18 1 4.5817 2.8799 0.0284 19 6 5.8691 3.3775 1.6824 20 6 5.9501 1.2775 0.3662 21 6 6.2962 0.2201 1.1864 22 7 7.0813 -0.7449 0.7495 23 6 7.5741 -0.7382 -0.4736 24 6 7.2765 0.2906 -1.3505 25 9 7.7850 0.2919 -2.6022 26 6 6.4480 1.3215 -0.9264 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.2090 2.0930 -1.7992 33 1 2.4436 3.1405 -1.0597 34 1 3.4375 3.6170 -4.4728 35 1 4.2540 1.2151 2.4669 36 1 6.3345 2.8698 2.5273 37 1 6.6422 3.8097 1.0471 38 1 5.2161 4.1694 2.0492 39 1 5.9157 0.1818 2.1964 40 1 8.2175 -1.5442 -0.7946 41 1 6.1983 2.1378 -1.5879 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336933394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:37 Heat of formation + Delta-G solvation = -91.131352 kcal Electronic energy + Delta-G solvation = -28371.556558 eV Core-core repulsion = 24327.757675 eV Total energy + Delta-G solvation = -4043.798883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.115 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.76032 -40.11886 -36.87296 -36.31228 -36.04359 -35.31120 -32.79137 -32.17493 -30.57802 -29.95940 -29.10908 -26.72931 -24.28336 -23.66293 -23.27407 -21.65540 -21.25631 -19.12358 -17.65915 -17.28508 -16.86504 -16.79226 -16.66156 -16.43222 -15.71546 -15.57080 -15.13910 -14.43641 -14.00926 -13.88408 -13.72890 -13.63090 -13.36469 -12.96229 -12.92147 -12.88483 -12.40679 -12.07951 -12.05976 -11.92987 -11.82180 -11.59397 -11.41805 -11.37146 -11.24612 -11.10617 -10.90790 -10.67549 -10.36318 -10.13144 -9.90652 -9.66628 -9.49124 -9.28931 -8.76208 -8.56174 -8.11775 -6.22180 -4.26272 0.99953 1.16146 1.29917 3.18897 3.28610 3.31327 3.38996 3.75264 4.04830 4.15413 4.28013 4.50454 4.69267 4.85490 4.96043 5.06398 5.10678 5.26172 5.31676 5.37595 5.41909 5.54868 5.75341 5.79487 5.87035 5.88215 5.98940 6.09331 6.13122 6.24063 6.32778 6.46492 6.65922 6.69189 6.74425 7.12763 7.27907 7.36210 7.55438 7.76404 7.87763 8.08323 8.78857 9.38683 10.85233 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.007197 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.101138 B = 3889.483631 C = 5256.647255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.989 5.989 4 C 0.243 3.757 5 C -0.534 4.534 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.873 3.127 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.262 1.262 13 S 2.780 3.220 14 O -0.996 6.996 15 O -0.977 6.977 16 N -1.124 6.124 17 C 0.198 3.802 18 H 0.121 0.879 19 C -0.158 4.158 20 C -0.098 4.098 21 C 0.092 3.908 22 N -0.460 5.460 23 C 0.062 3.938 24 C 0.052 3.948 25 F -0.131 7.131 26 C -0.076 4.076 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.027 0.973 33 H 0.057 0.943 34 H 0.265 0.735 35 H 0.407 0.593 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.922 -4.312 7.981 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.006 3.994 3 N -0.831 5.831 4 C 0.121 3.879 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.700 3.300 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.186 1.186 13 S 2.788 3.212 14 O -0.980 6.980 15 O -0.961 6.961 16 N -0.880 5.880 17 C 0.089 3.911 18 H 0.139 0.861 19 C -0.217 4.217 20 C -0.102 4.102 21 C -0.066 4.066 22 N -0.168 5.168 23 C -0.096 4.096 24 C 0.031 3.969 25 F -0.109 7.109 26 C -0.103 4.103 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.240 0.760 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.173 0.827 40 H 0.179 0.821 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.515 -4.193 8.750 11.160 hybrid contribution 0.785 -0.389 -1.782 1.986 sum 6.300 -4.582 6.968 10.451 Atomic orbital electron populations 1.22181 0.96967 1.01346 1.02303 1.20951 0.93611 0.82734 1.02148 1.57701 1.78355 1.23181 1.23904 1.19223 0.97346 0.92349 0.79004 1.21401 1.21719 1.09914 1.04303 0.91916 1.24896 0.96251 0.94418 0.97895 1.69960 1.45302 1.13495 1.23362 0.86914 0.80785 0.80476 0.81854 1.20717 1.21140 1.18634 1.01957 0.72593 0.73790 0.72817 1.93558 1.69392 1.76751 1.58282 1.93597 1.85964 1.30828 1.85702 1.56267 1.25286 1.64660 1.41814 1.19573 0.87479 0.90464 0.93541 0.86145 1.22197 1.00307 0.98999 1.00216 1.20944 0.97830 0.97811 0.93575 1.22455 0.94587 0.89604 0.99939 1.67687 1.09170 1.25539 1.14389 1.22758 1.00032 0.97363 0.89481 1.18787 0.98720 0.98044 0.81374 1.91528 1.85150 1.96408 1.37846 1.21668 0.93907 0.98637 0.96099 0.92746 0.92053 0.92434 0.89900 0.92156 0.95459 0.92490 0.92506 0.76044 0.92220 0.91292 0.90944 0.82725 0.82149 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.23 5.92 -4.04 -0.02 2.21 16 3 N -0.99 -18.92 2.94 -115.66 -0.34 -19.26 16 4 C 0.24 5.54 5.44 -5.19 -0.03 5.51 16 5 C -0.53 -12.57 8.69 -34.44 -0.30 -12.87 16 6 H 0.06 1.46 7.48 -52.48 -0.39 1.07 16 7 C 0.07 1.72 5.44 -17.82 -0.10 1.62 16 8 N -0.88 -23.52 13.29 55.43 0.74 -22.78 16 9 Si 0.87 19.59 29.55 -169.99 -5.02 14.56 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.26 -5.69 6.17 56.52 0.35 -5.34 16 13 S 2.78 50.34 6.00 -107.50 -0.64 49.69 16 14 O -1.00 -18.98 17.14 -57.17 -0.98 -19.96 16 15 O -0.98 -20.74 16.17 -57.17 -0.92 -21.66 16 16 N -1.12 -16.05 5.23 -5.88 -0.03 -16.08 16 17 C 0.20 2.90 3.08 -69.08 -0.21 2.68 16 18 H 0.12 2.12 7.40 -51.93 -0.38 1.74 16 19 C -0.16 -1.90 9.50 37.16 0.35 -1.55 16 20 C -0.10 -1.43 4.98 -104.50 -0.52 -1.95 16 21 C 0.09 1.23 10.47 -17.55 -0.18 1.05 16 22 N -0.46 -6.59 10.36 -13.20 -0.14 -6.72 16 23 C 0.06 0.87 11.17 -17.47 -0.20 0.68 16 24 C 0.05 0.83 7.32 -39.28 -0.29 0.54 16 25 F -0.13 -2.21 16.39 2.25 0.04 -2.17 16 26 C -0.08 -1.23 9.82 -39.21 -0.38 -1.62 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.44 7.27 -51.93 -0.38 1.07 16 31 H 0.06 0.91 7.64 -51.92 -0.40 0.52 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.42 6.78 -51.93 -0.35 1.07 16 34 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.41 4.60 7.49 -34.47 -0.26 4.34 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.16 1.65 6.78 -52.49 -0.36 1.29 16 40 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 41 H 0.16 2.66 8.06 -52.49 -0.42 2.24 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -29.76 361.80 -8.86 -38.62 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.51 Total: 6.26 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.50 Total: -5.95 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: 0.23 Total: -64.85 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -1.90 Total: -41.62 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: 50.34 SS G_CDS: -0.64 Total: 49.69 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.76 -8.86 -38.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336933394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.511 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds