Wall clock time and date at job start Tue Mar 31 2020 18:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47495 * 2 1 4 4 C 1.46503 * 119.99595 * 274.99740 * 3 2 1 5 5 C 1.50696 * 109.47064 * 294.82031 * 4 3 2 6 6 H 1.08003 * 120.00157 * 4.49699 * 5 4 3 7 7 C 1.37878 * 120.00321 * 184.49309 * 5 4 3 8 8 N 1.31521 * 119.99620 * 9.80859 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 189.81465 * 7 5 4 10 10 H 1.48504 * 109.47318 * 89.99063 * 9 7 5 11 11 H 1.48498 * 109.47238 * 209.99463 * 9 7 5 12 12 H 1.48501 * 109.46975 * 329.99459 * 9 7 5 13 13 S 1.65599 * 120.00409 * 94.99192 * 3 2 1 14 14 O 1.42097 * 106.40275 * 335.50880 * 13 3 2 15 15 O 1.42096 * 106.40351 * 202.58326 * 13 3 2 16 16 N 1.65602 * 107.21465 * 89.04614 * 13 3 2 17 17 C 1.46504 * 120.00290 * 68.35196 * 16 13 3 18 18 H 1.09002 * 109.46561 * 352.76449 * 17 16 13 19 19 C 1.52995 * 109.47011 * 112.76206 * 17 16 13 20 20 C 1.50700 * 109.47073 * 232.76418 * 17 16 13 21 21 C 1.38227 * 120.40667 * 321.90317 * 20 17 16 22 22 N 1.31849 * 120.82189 * 179.72806 * 21 20 17 23 23 C 1.31872 * 121.74406 * 0.52932 * 22 21 20 24 24 C 1.38417 * 120.73122 * 359.76283 * 23 22 21 25 25 F 1.35102 * 120.44458 * 179.97438 * 24 23 22 26 26 C 1.38590 * 120.39907 * 142.17515 * 20 17 16 27 27 H 1.08996 * 109.47191 * 300.00497 * 1 2 3 28 28 H 1.08999 * 109.46532 * 60.00466 * 1 2 3 29 29 H 1.08997 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47361 * 239.99169 * 2 1 3 31 31 H 1.09008 * 109.46500 * 119.99302 * 2 1 3 32 32 H 1.09003 * 109.47464 * 54.81899 * 4 3 2 33 33 H 1.08999 * 109.47314 * 174.82119 * 4 3 2 34 34 H 0.97002 * 119.99745 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99978 * 248.35236 * 16 13 3 36 36 H 1.09002 * 109.47260 * 60.00670 * 19 17 16 37 37 H 1.09001 * 109.46942 * 180.02562 * 19 17 16 38 38 H 1.09001 * 109.47491 * 300.00217 * 19 17 16 39 39 H 1.08001 * 119.59307 * 359.97438 * 21 20 17 40 40 H 1.08006 * 119.63319 * 179.72861 * 23 22 21 41 41 H 1.07992 * 120.80731 * 0.02562 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.1584 2.1085 -1.2640 5 6 3.2209 1.4513 -2.1067 6 1 3.6887 0.5378 -1.7703 7 6 3.5958 2.0160 -3.3074 8 7 3.1735 3.2195 -3.6282 9 14 4.7033 1.0718 -4.4784 10 1 3.8701 0.2622 -5.4034 11 1 5.5257 2.0286 -5.2617 12 1 5.5947 0.1739 -3.7009 13 16 2.4122 2.1202 1.4286 14 8 1.6696 1.4562 2.4419 15 8 2.3277 3.5190 1.1934 16 7 4.0077 1.7918 1.7269 17 6 5.0472 2.3723 0.8732 18 1 4.5817 2.8799 0.0284 19 6 5.8691 3.3775 1.6824 20 6 5.9501 1.2775 0.3662 21 6 6.2962 0.2201 1.1864 22 7 7.0813 -0.7449 0.7495 23 6 7.5741 -0.7382 -0.4736 24 6 7.2765 0.2906 -1.3505 25 9 7.7850 0.2919 -2.6022 26 6 6.4480 1.3215 -0.9264 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.2090 2.0930 -1.7992 33 1 2.4436 3.1405 -1.0597 34 1 3.4375 3.6170 -4.4728 35 1 4.2540 1.2151 2.4669 36 1 6.3345 2.8698 2.5273 37 1 6.6422 3.8097 1.0471 38 1 5.2161 4.1694 2.0492 39 1 5.9157 0.1818 2.1964 40 1 8.2175 -1.5442 -0.7946 41 1 6.1983 2.1378 -1.5879 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336933394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:32 Heat of formation + Delta-G solvation = -111.512577 kcal Electronic energy + Delta-G solvation = -28372.440354 eV Core-core repulsion = 24327.757675 eV Total energy + Delta-G solvation = -4044.682679 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.115 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -50.00266 -41.25579 -38.37465 -37.73508 -37.42808 -36.87902 -34.65726 -33.36828 -31.74592 -31.47476 -30.18950 -28.51438 -25.40882 -24.98286 -24.77874 -23.19775 -22.43896 -20.53045 -18.99329 -18.60913 -18.39222 -18.28847 -18.03862 -17.81356 -17.11648 -16.88710 -16.58547 -16.09506 -15.41092 -15.14122 -14.95688 -14.80419 -14.72874 -14.55918 -14.18191 -14.09533 -13.71820 -13.61998 -13.46663 -13.41139 -13.18472 -13.12424 -13.00430 -12.75808 -12.63685 -12.57988 -12.41645 -12.29735 -12.04116 -11.66887 -11.64819 -10.94153 -10.69317 -10.55310 -10.44948 -9.89920 -9.73749 -8.17381 -6.24770 -0.32886 -0.08770 0.09275 1.37037 1.44951 1.49745 1.96899 2.39853 2.58563 2.65069 3.00203 3.15600 3.38911 3.44158 3.59570 3.80115 3.91195 3.97424 4.10992 4.15365 4.30360 4.37578 4.46931 4.56604 4.72108 4.74969 4.84788 4.93718 4.97062 5.01389 5.19578 5.24700 5.30127 5.34562 5.43874 5.54994 5.60153 5.78693 5.87272 6.16505 6.19821 6.76736 6.86113 7.42975 8.90784 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.007197 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.101138 B = 3889.483631 C = 5256.647255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.124 3.876 3 N -0.995 5.995 4 C 0.258 3.742 5 C -0.516 4.516 6 H 0.069 0.931 7 C 0.031 3.969 8 N -0.920 5.920 9 Si 0.921 3.079 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.249 1.249 13 S 2.796 3.204 14 O -1.001 7.001 15 O -1.011 7.011 16 N -1.106 6.106 17 C 0.199 3.801 18 H 0.086 0.914 19 C -0.155 4.155 20 C -0.100 4.100 21 C 0.102 3.898 22 N -0.465 5.465 23 C 0.072 3.928 24 C 0.033 3.967 25 F -0.141 7.141 26 C -0.092 4.092 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.005 0.995 33 H 0.031 0.969 34 H 0.263 0.737 35 H 0.425 0.575 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.187 0.813 40 H 0.189 0.811 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.040 -6.469 9.730 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.002 4.002 3 N -0.836 5.836 4 C 0.135 3.865 5 C -0.556 4.556 6 H 0.087 0.913 7 C -0.170 4.170 8 N -0.560 5.560 9 Si 0.748 3.252 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.173 1.173 13 S 2.805 3.195 14 O -0.985 6.985 15 O -0.995 6.995 16 N -0.868 5.868 17 C 0.091 3.909 18 H 0.104 0.896 19 C -0.214 4.214 20 C -0.103 4.103 21 C -0.056 4.056 22 N -0.172 5.172 23 C -0.086 4.086 24 C 0.012 3.988 25 F -0.120 7.120 26 C -0.119 4.119 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.023 0.977 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.262 0.738 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.204 0.796 40 H 0.206 0.794 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.629 -6.388 10.527 13.985 hybrid contribution 0.438 0.261 -2.247 2.304 sum 7.068 -6.127 8.280 12.492 Atomic orbital electron populations 1.22168 0.96094 1.03034 1.01297 1.21181 0.94484 0.81444 1.03055 1.57629 1.79154 1.24038 1.22743 1.18767 0.95916 0.91539 0.80309 1.21521 1.20846 1.09402 1.03809 0.91332 1.25440 0.97438 0.94816 0.99268 1.70064 1.47175 1.14969 1.23784 0.86137 0.79476 0.79387 0.80208 1.21195 1.21867 1.17290 1.01310 0.73165 0.72859 0.72213 1.93545 1.70209 1.76625 1.58117 1.93557 1.86748 1.33147 1.86058 1.55817 1.23780 1.64947 1.42245 1.19510 0.87404 0.91005 0.93015 0.89631 1.22192 1.00017 0.98322 1.00876 1.20890 0.97991 0.98261 0.93204 1.22907 0.93424 0.88366 1.00855 1.67818 1.09410 1.25655 1.14313 1.23163 0.99394 0.97139 0.88922 1.18969 0.99529 0.98806 0.81490 1.91496 1.85393 1.96524 1.38571 1.21637 0.94940 0.98594 0.96744 0.93304 0.93485 0.89430 0.90384 0.89740 0.97674 0.95067 0.92755 0.73823 0.89357 0.90633 0.91574 0.79592 0.79431 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.99 10.24 71.98 0.74 -4.25 16 2 C 0.12 3.99 5.92 86.38 0.51 4.51 16 3 N -0.99 -37.75 2.94 -519.83 -1.53 -39.27 16 4 C 0.26 12.09 5.44 85.63 0.47 12.55 16 5 C -0.52 -24.53 8.69 25.60 0.22 -24.30 16 6 H 0.07 3.15 7.48 -2.91 -0.02 3.12 16 7 C 0.03 1.55 5.44 84.65 0.46 2.01 16 8 N -0.92 -50.50 13.29 21.45 0.29 -50.21 16 9 Si 0.92 40.65 29.55 68.60 2.03 42.68 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.25 -10.39 6.17 99.48 0.61 -9.78 16 13 S 2.80 99.07 6.00 -56.49 -0.34 98.73 16 14 O -1.00 -36.28 17.14 -128.00 -2.19 -38.47 16 15 O -1.01 -43.52 16.17 -128.00 -2.07 -45.59 16 16 N -1.11 -29.43 5.23 -172.52 -0.90 -30.34 16 17 C 0.20 5.61 3.08 44.24 0.14 5.75 16 18 H 0.09 3.09 7.40 -2.39 -0.02 3.07 16 19 C -0.16 -3.46 9.50 71.98 0.68 -2.77 16 20 C -0.10 -2.73 4.98 -19.78 -0.10 -2.83 16 21 C 0.10 2.38 10.47 84.69 0.89 3.26 16 22 N -0.46 -11.65 10.36 -195.66 -2.03 -13.68 16 23 C 0.07 1.81 11.17 84.73 0.95 2.76 16 24 C 0.03 1.01 7.32 22.47 0.16 1.18 16 25 F -0.14 -4.62 16.39 44.97 0.74 -3.88 16 26 C -0.09 -2.92 9.82 22.51 0.22 -2.70 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.60 7.27 -2.39 -0.02 2.58 16 31 H 0.08 2.32 7.64 -2.38 -0.02 2.30 16 32 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.03 1.63 6.78 -2.39 -0.02 1.62 16 34 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 35 H 0.42 8.13 7.49 -96.74 -0.72 7.41 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.19 3.06 6.78 -2.91 -0.02 3.04 16 40 H 0.19 3.61 8.06 -2.91 -0.02 3.58 16 41 H 0.13 4.77 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -64.28 361.80 -0.43 -64.71 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.24 Total: 20.16 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 5.34 Total: -4.84 kcal Atomic # 7 Polarization: -129.33 SS G_CDS: -4.17 Total: -133.50 kcal Atomic # 8 Polarization: -79.80 SS G_CDS: -4.26 Total: -84.06 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.74 Total: -3.88 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Atomic # 16 Polarization: 99.07 SS G_CDS: -0.34 Total: 98.73 kcal Total: -64.28 -0.43 -64.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336933394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.798 kcal (2) G-P(sol) polarization free energy of solvation -64.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds