Wall clock time and date at job start Tue Mar 31 2020 18:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46974 * 2 1 4 4 C 1.46496 * 120.00087 * 275.28090 * 3 2 1 5 5 C 1.50701 * 109.46892 * 275.15863 * 4 3 2 6 6 H 1.08000 * 120.00161 * 4.82510 * 5 4 3 7 7 C 1.37879 * 119.99969 * 184.82323 * 5 4 3 8 8 N 1.31511 * 120.00288 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99778 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46797 * 90.00586 * 9 7 5 11 11 H 1.48503 * 109.47193 * 209.99886 * 9 7 5 12 12 H 1.48489 * 109.47364 * 330.00449 * 9 7 5 13 13 S 1.65603 * 119.99622 * 95.00201 * 3 2 1 14 14 O 1.42101 * 106.39766 * 209.16722 * 13 3 2 15 15 O 1.42102 * 106.40259 * 342.08920 * 13 3 2 16 16 N 1.65597 * 107.21697 * 95.63172 * 13 3 2 17 17 C 1.46504 * 119.99940 * 295.95583 * 16 13 3 18 18 H 1.08999 * 109.46738 * 23.76636 * 17 16 13 19 19 C 1.52998 * 109.47178 * 263.76532 * 17 16 13 20 20 C 1.50701 * 109.47075 * 143.76413 * 17 16 13 21 21 C 1.38230 * 120.40366 * 40.00005 * 20 17 16 22 22 N 1.31850 * 120.82045 * 179.97438 * 21 20 17 23 23 C 1.31870 * 121.74890 * 0.02562 * 22 21 20 24 24 C 1.38424 * 120.72703 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.44542 * 180.02562 * 24 23 22 26 26 C 1.38596 * 120.40381 * 219.72217 * 20 17 16 27 27 H 1.09000 * 109.47006 * 299.99318 * 1 2 3 28 28 H 1.08999 * 109.47380 * 59.99601 * 1 2 3 29 29 H 1.09007 * 109.46831 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47006 * 240.00682 * 2 1 3 31 31 H 1.08999 * 109.47380 * 120.00399 * 2 1 3 32 32 H 1.09002 * 109.47563 * 35.15784 * 4 3 2 33 33 H 1.09001 * 109.47098 * 155.15988 * 4 3 2 34 34 H 0.96997 * 120.00462 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00206 * 115.95582 * 16 13 3 36 36 H 1.09003 * 109.47388 * 185.06693 * 19 17 16 37 37 H 1.08995 * 109.47271 * 305.06804 * 19 17 16 38 38 H 1.09005 * 109.46923 * 65.06928 * 19 17 16 39 39 H 1.08002 * 119.59393 * 0.02562 * 21 20 17 40 40 H 1.07998 * 119.63448 * 179.97438 * 23 22 21 41 41 H 1.07995 * 120.80058 * 359.97438 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1523 2.1108 -1.2633 5 6 3.4844 1.7889 -1.8903 6 1 4.1298 1.0505 -1.4380 7 6 3.8791 2.4371 -3.0414 8 7 3.0935 3.3366 -3.5920 9 14 5.5306 2.0386 -3.8182 10 1 5.3642 0.9322 -4.7947 11 1 6.0522 3.2409 -4.5166 12 1 6.4882 1.6258 -2.7610 13 16 2.4121 2.1202 1.4288 14 8 2.1782 3.5090 1.2399 15 8 1.7927 1.3604 2.4575 16 7 4.0456 1.9452 1.6371 17 6 4.6237 0.6095 1.8050 18 1 3.9591 -0.1322 1.3621 19 6 4.7979 0.3129 3.2958 20 6 5.9657 0.5535 1.1215 21 6 6.8334 1.6270 1.1947 22 7 8.0097 1.5866 0.6003 23 6 8.4056 0.5310 -0.0837 24 6 7.5909 -0.5820 -0.2012 25 9 8.0025 -1.6606 -0.9029 26 6 6.3472 -0.5772 0.4167 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.3511 1.8151 -1.9405 33 1 2.0900 3.1822 -1.0725 34 1 3.3713 3.7928 -4.4016 35 1 4.6197 2.7270 1.6480 36 1 5.3099 -0.6415 3.4190 37 1 5.3885 1.1042 3.7571 38 1 3.8192 0.2645 3.7733 39 1 6.5448 2.5095 1.7464 40 1 9.3761 0.5348 -0.5574 41 1 5.6916 -1.4326 0.3468 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336933395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:42 Heat of formation + Delta-G solvation = -91.084102 kcal Electronic energy + Delta-G solvation = -27988.324935 eV Core-core repulsion = 23944.528101 eV Total energy + Delta-G solvation = -4043.796834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.115 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.99002 -40.28242 -36.91558 -36.31825 -36.07574 -35.28803 -32.76154 -32.34906 -30.68783 -29.99867 -29.20117 -26.67833 -24.45397 -23.87653 -23.19380 -21.77019 -21.41229 -19.12268 -17.79936 -17.41681 -16.97899 -16.84983 -16.76373 -16.33603 -15.85957 -15.79391 -15.11303 -14.42154 -14.18194 -13.88740 -13.86896 -13.79204 -13.41657 -13.17101 -13.06996 -12.96228 -12.56876 -12.16031 -12.14925 -11.99678 -11.73305 -11.65492 -11.52071 -11.42892 -11.26980 -11.09665 -10.99346 -10.55858 -10.45866 -10.15948 -9.87851 -9.78183 -9.64100 -9.36456 -8.90040 -8.53480 -8.13243 -6.15085 -4.21410 0.87051 1.03000 1.24669 3.21321 3.29441 3.29688 3.36297 3.62315 3.93114 4.04481 4.32834 4.36647 4.52140 4.66654 4.80059 4.90669 4.94498 5.13314 5.18500 5.20872 5.34648 5.44852 5.66316 5.69644 5.72028 5.76297 5.78378 5.85365 6.02695 6.13769 6.19951 6.28669 6.56814 6.59134 6.60553 7.10670 7.33014 7.39572 7.60412 7.77944 7.81747 8.10740 8.83172 9.45121 10.92805 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.009510 B = 0.006938 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.616798 B = 4034.853482 C = 5651.317013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.126 3.874 3 N -0.991 5.991 4 C 0.247 3.753 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.888 5.888 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 S 2.786 3.214 14 O -0.978 6.978 15 O -0.996 6.996 16 N -1.119 6.119 17 C 0.205 3.795 18 H 0.095 0.905 19 C -0.167 4.167 20 C -0.099 4.099 21 C 0.104 3.896 22 N -0.453 5.453 23 C 0.070 3.930 24 C 0.051 3.949 25 F -0.132 7.132 26 C -0.097 4.097 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.413 0.587 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.060 -8.756 10.213 14.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.833 5.833 4 C 0.125 3.875 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 S 2.794 3.206 14 O -0.962 6.962 15 O -0.979 6.979 16 N -0.877 5.877 17 C 0.097 3.903 18 H 0.113 0.887 19 C -0.226 4.226 20 C -0.103 4.103 21 C -0.054 4.054 22 N -0.160 5.160 23 C -0.089 4.089 24 C 0.030 3.970 25 F -0.110 7.110 26 C -0.124 4.124 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.247 0.753 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.178 0.822 40 H 0.181 0.819 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.884 -7.635 10.683 14.009 hybrid contribution 1.007 -0.951 -1.354 1.937 sum 5.891 -8.585 9.328 13.979 Atomic orbital electron populations 1.22192 0.96801 1.01454 1.02405 1.21052 0.93928 0.82999 1.02058 1.57718 1.78479 1.22808 1.24299 1.19186 0.97184 0.92272 0.78903 1.21487 1.03183 1.23094 1.09743 0.92111 1.24913 0.97021 0.94776 0.96944 1.69920 1.36755 1.25388 1.20522 0.86648 0.84185 0.77961 0.79575 1.20649 1.21075 1.19921 1.01780 0.72654 0.73190 0.73025 1.93601 1.83939 1.32260 1.86409 1.93547 1.74792 1.73187 1.56408 1.56197 1.28867 1.12588 1.90004 1.19397 0.90804 0.84898 0.95249 0.88742 1.22344 1.03705 1.02061 0.94446 1.20854 0.97386 0.94189 0.97837 1.22545 0.88810 0.97705 0.96294 1.67719 1.16663 1.24785 1.06817 1.22855 1.00241 0.88079 0.97675 1.18737 0.95387 0.86138 0.96778 1.91514 1.90266 1.52848 1.76391 1.21474 0.95017 0.99759 0.96155 0.92741 0.91996 0.92277 0.90212 0.91762 0.94595 0.93006 0.92576 0.75278 0.91547 0.91701 0.90311 0.82199 0.81866 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.23 37.16 0.38 -2.12 16 2 C 0.13 2.01 5.83 -4.04 -0.02 1.99 16 3 N -0.99 -19.04 2.83 -115.66 -0.33 -19.37 16 4 C 0.25 5.85 5.45 -5.20 -0.03 5.83 16 5 C -0.54 -13.48 9.38 -34.44 -0.32 -13.81 16 6 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 7 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -25.13 13.29 55.43 0.74 -24.40 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 S 2.79 51.35 6.00 -107.50 -0.65 50.70 16 14 O -0.98 -21.75 16.81 -57.17 -0.96 -22.71 16 15 O -1.00 -18.35 16.42 -57.17 -0.94 -19.29 16 16 N -1.12 -16.79 5.47 -5.88 -0.03 -16.83 16 17 C 0.21 2.62 3.04 -69.08 -0.21 2.41 16 18 H 0.09 1.17 6.74 -51.93 -0.35 0.82 16 19 C -0.17 -1.73 9.50 37.16 0.35 -1.38 16 20 C -0.10 -1.32 4.96 -104.49 -0.52 -1.84 16 21 C 0.10 1.44 10.34 -17.55 -0.18 1.26 16 22 N -0.45 -6.78 10.36 -13.20 -0.14 -6.92 16 23 C 0.07 0.97 11.17 -17.47 -0.20 0.78 16 24 C 0.05 0.71 7.34 -39.28 -0.29 0.42 16 25 F -0.13 -1.81 17.28 2.25 0.04 -1.78 16 26 C -0.10 -1.28 9.81 -39.21 -0.38 -1.66 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.26 8.11 -51.93 -0.42 0.84 16 31 H 0.06 0.88 6.61 -51.93 -0.34 0.54 16 32 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 33 H 0.05 1.38 6.98 -51.93 -0.36 1.02 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.41 5.70 7.13 -34.47 -0.25 5.45 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.88 7.86 -51.93 -0.41 0.48 16 39 H 0.16 1.86 6.82 -52.49 -0.36 1.51 16 40 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -32.25 363.11 -8.74 -40.99 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.41 Total: 4.63 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.52 Total: -6.44 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: 0.24 Total: -67.51 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.90 Total: -42.00 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 51.35 SS G_CDS: -0.65 Total: 50.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.25 -8.74 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336933395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.089 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds