Wall clock time and date at job start Tue Mar 31 2020 18:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46974 * 2 1 4 4 C 1.46496 * 120.00087 * 275.28090 * 3 2 1 5 5 C 1.50701 * 109.46892 * 275.15863 * 4 3 2 6 6 H 1.08000 * 120.00161 * 4.82510 * 5 4 3 7 7 C 1.37879 * 119.99969 * 184.82323 * 5 4 3 8 8 N 1.31511 * 120.00288 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99778 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46797 * 90.00586 * 9 7 5 11 11 H 1.48503 * 109.47193 * 209.99886 * 9 7 5 12 12 H 1.48489 * 109.47364 * 330.00449 * 9 7 5 13 13 S 1.65603 * 119.99622 * 95.00201 * 3 2 1 14 14 O 1.42101 * 106.39766 * 209.16722 * 13 3 2 15 15 O 1.42102 * 106.40259 * 342.08920 * 13 3 2 16 16 N 1.65597 * 107.21697 * 95.63172 * 13 3 2 17 17 C 1.46504 * 119.99940 * 295.95583 * 16 13 3 18 18 H 1.08999 * 109.46738 * 23.76636 * 17 16 13 19 19 C 1.52998 * 109.47178 * 263.76532 * 17 16 13 20 20 C 1.50701 * 109.47075 * 143.76413 * 17 16 13 21 21 C 1.38230 * 120.40366 * 40.00005 * 20 17 16 22 22 N 1.31850 * 120.82045 * 179.97438 * 21 20 17 23 23 C 1.31870 * 121.74890 * 0.02562 * 22 21 20 24 24 C 1.38424 * 120.72703 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.44542 * 180.02562 * 24 23 22 26 26 C 1.38596 * 120.40381 * 219.72217 * 20 17 16 27 27 H 1.09000 * 109.47006 * 299.99318 * 1 2 3 28 28 H 1.08999 * 109.47380 * 59.99601 * 1 2 3 29 29 H 1.09007 * 109.46831 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47006 * 240.00682 * 2 1 3 31 31 H 1.08999 * 109.47380 * 120.00399 * 2 1 3 32 32 H 1.09002 * 109.47563 * 35.15784 * 4 3 2 33 33 H 1.09001 * 109.47098 * 155.15988 * 4 3 2 34 34 H 0.96997 * 120.00462 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00206 * 115.95582 * 16 13 3 36 36 H 1.09003 * 109.47388 * 185.06693 * 19 17 16 37 37 H 1.08995 * 109.47271 * 305.06804 * 19 17 16 38 38 H 1.09005 * 109.46923 * 65.06928 * 19 17 16 39 39 H 1.08002 * 119.59393 * 0.02562 * 21 20 17 40 40 H 1.07998 * 119.63448 * 179.97438 * 23 22 21 41 41 H 1.07995 * 120.80058 * 359.97438 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1523 2.1108 -1.2633 5 6 3.4844 1.7889 -1.8903 6 1 4.1298 1.0505 -1.4380 7 6 3.8791 2.4371 -3.0414 8 7 3.0935 3.3366 -3.5920 9 14 5.5306 2.0386 -3.8182 10 1 5.3642 0.9322 -4.7947 11 1 6.0522 3.2409 -4.5166 12 1 6.4882 1.6258 -2.7610 13 16 2.4121 2.1202 1.4288 14 8 2.1782 3.5090 1.2399 15 8 1.7927 1.3604 2.4575 16 7 4.0456 1.9452 1.6371 17 6 4.6237 0.6095 1.8050 18 1 3.9591 -0.1322 1.3621 19 6 4.7979 0.3129 3.2958 20 6 5.9657 0.5535 1.1215 21 6 6.8334 1.6270 1.1947 22 7 8.0097 1.5866 0.6003 23 6 8.4056 0.5310 -0.0837 24 6 7.5909 -0.5820 -0.2012 25 9 8.0025 -1.6606 -0.9029 26 6 6.3472 -0.5772 0.4167 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.3511 1.8151 -1.9405 33 1 2.0900 3.1822 -1.0725 34 1 3.3713 3.7928 -4.4016 35 1 4.6197 2.7270 1.6480 36 1 5.3099 -0.6415 3.4190 37 1 5.3885 1.1042 3.7571 38 1 3.8192 0.2645 3.7733 39 1 6.5448 2.5095 1.7464 40 1 9.3761 0.5348 -0.5574 41 1 5.6916 -1.4326 0.3468 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336933395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:41 Heat of formation + Delta-G solvation = -113.662764 kcal Electronic energy + Delta-G solvation = -27989.304019 eV Core-core repulsion = 23944.528101 eV Total energy + Delta-G solvation = -4044.775918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.115 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.02803 -41.31232 -38.36905 -37.69098 -37.44349 -36.85491 -34.69600 -33.42005 -31.77647 -31.49154 -30.16398 -28.48826 -25.44349 -25.01940 -24.80587 -23.25830 -22.45553 -20.49073 -19.00890 -18.63883 -18.57070 -18.24360 -17.97389 -17.82898 -17.21900 -16.87405 -16.58798 -16.06211 -15.47437 -15.08973 -14.93249 -14.86793 -14.75233 -14.57630 -14.19751 -14.14419 -13.79736 -13.62782 -13.49092 -13.33616 -13.26602 -13.14569 -13.03496 -12.76832 -12.74931 -12.57044 -12.36649 -12.22750 -12.13952 -11.76217 -11.59951 -10.91575 -10.69918 -10.60465 -10.49746 -9.95142 -9.75565 -8.18474 -6.29622 -0.30089 -0.13256 0.05077 1.35051 1.38447 1.44820 1.97111 2.37655 2.55650 2.62776 2.91815 3.14619 3.33593 3.47023 3.53512 3.71299 3.82801 3.91676 4.07400 4.09682 4.27077 4.43654 4.46892 4.55533 4.65971 4.74985 4.76970 4.88258 4.94584 5.01517 5.17016 5.21667 5.29695 5.36985 5.43197 5.53407 5.56697 5.76683 5.90644 6.11043 6.11774 6.74419 6.83289 7.40142 8.89633 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.009510 B = 0.006938 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.616798 B = 4034.853482 C = 5651.317013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.995 5.995 4 C 0.263 3.737 5 C -0.526 4.526 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.927 5.927 9 Si 0.945 3.055 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.268 1.268 13 S 2.800 3.200 14 O -1.021 7.021 15 O -0.993 6.993 16 N -1.113 6.113 17 C 0.201 3.799 18 H 0.102 0.898 19 C -0.162 4.162 20 C -0.103 4.103 21 C 0.093 3.907 22 N -0.474 5.474 23 C 0.061 3.939 24 C 0.040 3.960 25 F -0.132 7.132 26 C -0.099 4.099 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.020 0.980 33 H 0.017 0.983 34 H 0.263 0.737 35 H 0.419 0.581 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.175 0.825 40 H 0.183 0.817 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.004 -10.806 11.149 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 N -0.836 5.836 4 C 0.139 3.861 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.567 5.567 9 Si 0.772 3.228 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.193 1.193 13 S 2.808 3.192 14 O -1.005 7.005 15 O -0.977 6.977 16 N -0.874 5.874 17 C 0.093 3.907 18 H 0.120 0.880 19 C -0.221 4.221 20 C -0.106 4.106 21 C -0.065 4.065 22 N -0.182 5.182 23 C -0.098 4.098 24 C 0.018 3.982 25 F -0.111 7.111 26 C -0.125 4.125 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.254 0.746 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.192 0.808 40 H 0.200 0.800 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.824 -9.717 11.640 16.243 hybrid contribution 0.712 -0.365 -1.573 1.765 sum 6.536 -10.082 10.067 15.675 Atomic orbital electron populations 1.22195 0.96066 1.03264 1.01268 1.21362 0.94708 0.81280 1.03559 1.57615 1.79275 1.24020 1.22733 1.18680 0.96249 0.90808 0.80377 1.21786 1.03447 1.22257 1.09075 0.90881 1.25643 0.99883 0.94944 0.97859 1.70043 1.38550 1.26915 1.21184 0.85743 0.80730 0.77489 0.78845 1.20025 1.21723 1.19270 1.01182 0.73288 0.72000 0.72691 1.93545 1.85063 1.35021 1.86883 1.93545 1.75383 1.72830 1.55927 1.55941 1.27721 1.14128 1.89625 1.19668 0.90510 0.83527 0.97009 0.87997 1.22319 1.03804 1.03604 0.92360 1.20893 0.97422 0.94237 0.98061 1.22880 0.88754 0.98523 0.96301 1.67751 1.17323 1.25451 1.07636 1.23231 1.01152 0.87917 0.97452 1.18854 0.95862 0.86226 0.97239 1.91511 1.90323 1.52817 1.76451 1.21784 0.95066 1.00420 0.95277 0.93450 0.93565 0.89017 0.89956 0.88916 0.96198 0.96472 0.92763 0.74562 0.89327 0.90853 0.90950 0.80831 0.79998 0.81002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.71 10.23 71.98 0.74 -3.97 16 2 C 0.12 3.46 5.83 86.38 0.50 3.96 16 3 N -1.00 -37.45 2.83 -519.85 -1.47 -38.92 16 4 C 0.26 12.61 5.45 85.63 0.47 13.08 16 5 C -0.53 -26.17 9.38 25.60 0.24 -25.93 16 6 H 0.07 3.39 7.81 -2.91 -0.02 3.37 16 7 C 0.02 0.86 5.46 84.66 0.46 1.32 16 8 N -0.93 -53.27 13.29 21.45 0.28 -52.98 16 9 Si 0.95 42.61 29.54 68.60 2.03 44.63 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 13 S 2.80 100.84 6.00 -56.49 -0.34 100.50 16 14 O -1.02 -46.00 16.81 -128.00 -2.15 -48.15 16 15 O -0.99 -34.81 16.42 -128.00 -2.10 -36.91 16 16 N -1.11 -31.59 5.47 -172.52 -0.94 -32.54 16 17 C 0.20 4.56 3.04 44.24 0.13 4.70 16 18 H 0.10 2.17 6.74 -2.39 -0.02 2.15 16 19 C -0.16 -2.86 9.50 71.98 0.68 -2.18 16 20 C -0.10 -2.48 4.96 -19.78 -0.10 -2.58 16 21 C 0.09 2.40 10.34 84.69 0.88 3.27 16 22 N -0.47 -13.42 10.36 -195.66 -2.03 -15.44 16 23 C 0.06 1.57 11.17 84.73 0.95 2.52 16 24 C 0.04 1.01 7.34 22.47 0.17 1.18 16 25 F -0.13 -3.35 17.28 44.97 0.78 -2.58 16 26 C -0.10 -2.31 9.81 22.51 0.22 -2.09 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.41 8.12 -2.39 -0.02 1.39 16 29 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.08 2.42 8.11 -2.39 -0.02 2.40 16 31 H 0.09 2.23 6.61 -2.39 -0.02 2.22 16 32 H 0.02 1.01 8.09 -2.39 -0.02 0.99 16 33 H 0.02 0.95 6.98 -2.39 -0.02 0.93 16 34 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.42 11.05 7.13 -96.75 -0.69 10.36 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.40 7.86 -2.38 -0.02 1.39 16 39 H 0.17 3.77 6.82 -2.91 -0.02 3.75 16 40 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 41 H 0.17 3.09 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -68.75 363.11 -0.24 -68.99 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.37 Total: 20.12 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.34 Total: -6.72 kcal Atomic # 7 Polarization: -135.73 SS G_CDS: -4.15 Total: -139.88 kcal Atomic # 8 Polarization: -80.81 SS G_CDS: -4.25 Total: -85.06 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 100.84 SS G_CDS: -0.34 Total: 100.50 kcal Total: -68.75 -0.24 -68.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336933395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.676 kcal (2) G-P(sol) polarization free energy of solvation -68.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds