Wall clock time and date at job start Tue Mar 31 2020 17:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46768 * 2 1 4 4 C 1.50703 * 109.47112 * 240.00118 * 2 1 3 5 5 H 1.07998 * 120.00148 * 240.00355 * 4 2 1 6 6 C 1.37879 * 119.99611 * 60.00142 * 4 2 1 7 7 N 1.31507 * 120.00233 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99792 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47077 * 89.99758 * 8 6 4 10 10 H 1.48498 * 109.47134 * 209.99762 * 8 6 4 11 11 H 1.48500 * 109.47132 * 329.99841 * 8 6 4 12 12 N 1.46496 * 109.46955 * 120.00285 * 2 1 3 13 13 C 1.46503 * 120.00277 * 60.00515 * 12 2 1 14 14 S 1.65602 * 119.99866 * 239.99999 * 12 2 1 15 15 O 1.42101 * 106.40151 * 336.46011 * 14 12 2 16 16 O 1.42102 * 106.40102 * 203.54424 * 14 12 2 17 17 N 1.65597 * 107.21954 * 90.00214 * 14 12 2 18 18 C 1.46499 * 119.99960 * 64.99692 * 17 14 12 19 19 H 1.09001 * 109.47247 * 25.00460 * 18 17 14 20 20 C 1.53002 * 109.47410 * 265.00215 * 18 17 14 21 21 C 1.50706 * 109.47104 * 145.00012 * 18 17 14 22 22 C 1.38233 * 120.39963 * 40.00037 * 21 18 17 23 23 N 1.31854 * 120.81857 * 179.97438 * 22 21 18 24 24 C 1.31869 * 121.74590 * 359.97438 * 23 22 21 25 25 C 1.38416 * 120.73050 * 359.97438 * 24 23 22 26 26 F 1.35105 * 120.44453 * 180.02562 * 25 24 23 27 27 C 1.38591 * 120.40703 * 219.72502 * 21 18 17 28 28 H 1.09005 * 109.47116 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47151 * 299.99286 * 1 2 3 30 30 H 1.09000 * 109.46814 * 60.00074 * 1 2 3 31 31 H 0.97002 * 120.00213 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.46674 * 269.99689 * 13 12 2 33 33 H 1.08996 * 109.47204 * 29.99511 * 13 12 2 34 34 H 1.08995 * 109.47198 * 150.00011 * 13 12 2 35 35 H 0.97000 * 119.99853 * 245.00378 * 17 14 12 36 36 H 1.09001 * 109.46613 * 180.02562 * 20 18 17 37 37 H 1.09005 * 109.46869 * 299.99872 * 20 18 17 38 38 H 1.09002 * 109.47114 * 59.99973 * 20 18 17 39 39 H 1.07999 * 119.59840 * 0.02562 * 22 21 18 40 40 H 1.08002 * 119.63423 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.80091 * 359.97438 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3225 -1.1193 -4.0080 9 1 1.3448 -2.1614 -4.4125 10 1 2.4872 -0.1400 -5.1120 11 1 3.6309 -1.7563 -3.7121 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.5794 1.1829 1.5749 16 8 3.7119 -0.8790 2.9814 17 7 1.9607 0.8089 3.3998 18 6 1.1510 -0.0354 4.2816 19 1 1.6297 -1.0083 4.3934 20 6 -0.2415 -0.2189 3.6747 21 6 1.0277 0.6218 5.6322 22 6 0.8463 1.9886 5.7311 23 7 0.7369 2.5721 6.9085 24 6 0.7947 1.8840 8.0319 25 6 0.9735 0.5115 8.0123 26 9 1.0314 -0.1878 9.1668 27 6 1.0891 -0.1375 6.7900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7082 1.1610 -3.4843 32 1 0.7376 -2.1445 1.9992 33 1 1.5296 -2.5969 0.4707 34 1 2.4629 -2.5819 1.9862 35 1 1.9054 1.7749 3.4682 36 1 -0.8440 -0.8467 4.3311 37 1 -0.7202 0.7540 3.5630 38 1 -0.1523 -0.6943 2.6979 39 1 0.7926 2.5859 4.8330 40 1 0.7015 2.3970 8.9777 41 1 1.2253 -1.2078 6.7429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337743462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:00 Heat of formation + Delta-G solvation = -82.898952 kcal Electronic energy + Delta-G solvation = -27182.953139 eV Core-core repulsion = 23139.511240 eV Total energy + Delta-G solvation = -4043.441899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.115 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.29329 -40.59483 -36.99384 -36.57807 -36.12829 -35.31511 -32.66043 -32.61516 -30.95911 -29.38731 -29.13017 -25.59720 -25.24054 -24.63982 -24.14965 -21.62653 -20.86843 -19.10822 -18.04145 -17.67632 -17.22380 -17.02308 -16.86695 -16.34993 -16.13385 -15.65898 -15.21742 -14.47510 -14.34693 -14.16121 -13.93399 -13.60774 -13.50482 -13.41741 -13.25093 -12.77379 -12.65057 -12.28473 -12.03070 -11.88844 -11.67219 -11.56421 -11.46353 -11.33113 -11.19371 -10.95407 -10.83859 -10.52822 -10.27034 -10.17899 -10.07964 -9.93866 -9.58219 -9.31364 -9.19789 -8.49210 -8.04643 -6.11126 -4.17778 0.53991 0.70660 1.12713 3.22219 3.25708 3.33368 3.36099 3.39814 3.63286 3.98506 4.08722 4.24719 4.37024 4.38808 4.52293 4.82114 4.83978 4.88870 5.05980 5.20897 5.33943 5.42627 5.46635 5.60359 5.65088 5.69090 5.90137 6.04366 6.19047 6.26565 6.33912 6.62089 6.72776 6.78108 6.95680 7.01142 7.41544 7.46344 7.58161 7.74987 8.00836 8.23213 8.84209 9.48233 10.94428 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.026493 B = 0.003174 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.642363 B = 8820.411705 C = 8953.397438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.522 4.522 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.986 5.986 13 C 0.091 3.909 14 S 2.778 3.222 15 O -0.970 6.970 16 O -0.995 6.995 17 N -1.129 6.129 18 C 0.196 3.804 19 H 0.103 0.897 20 C -0.176 4.176 21 C -0.101 4.101 22 C 0.099 3.901 23 N -0.452 5.452 24 C 0.069 3.931 25 C 0.051 3.949 26 F -0.130 7.130 27 C -0.101 4.101 28 H 0.032 0.968 29 H 0.013 0.987 30 H 0.092 0.908 31 H 0.263 0.737 32 H 0.039 0.961 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.412 0.588 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.411 -1.495 17.737 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.077 0.923 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.829 5.829 13 C -0.056 4.056 14 S 2.787 3.213 15 O -0.954 6.954 16 O -0.979 6.979 17 N -0.887 5.887 18 C 0.087 3.913 19 H 0.121 0.879 20 C -0.235 4.235 21 C -0.105 4.105 22 C -0.058 4.058 23 N -0.159 5.159 24 C -0.090 4.090 25 C 0.029 3.971 26 F -0.109 7.109 27 C -0.128 4.128 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.245 0.755 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.182 0.818 40 H 0.184 0.816 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.618 -0.633 17.655 18.033 hybrid contribution -0.090 -1.093 -0.650 1.275 sum -3.707 -1.726 17.005 17.490 Atomic orbital electron populations 1.22149 0.98153 0.99726 1.00702 1.18732 0.91306 0.93000 0.80340 0.92345 1.21331 1.31692 1.13061 0.90060 0.91900 1.24896 0.94944 0.94976 0.99000 1.69849 1.36462 1.22635 1.23826 0.86504 0.79288 0.79289 0.82369 1.20675 1.21139 1.19839 1.57651 1.69875 1.19753 1.35639 1.21414 0.98773 0.82447 1.02942 1.02010 0.73584 0.73271 0.72449 1.93629 1.74147 1.55952 1.71661 1.93531 1.69080 1.60723 1.74542 1.56470 1.62057 1.17299 1.52840 1.19543 0.93118 0.93626 0.84983 0.87932 1.22528 0.94835 1.03424 1.02695 1.20955 0.98929 0.95136 0.95487 1.22698 0.95264 0.91959 0.95911 1.67788 1.11054 1.39154 0.97943 1.22942 0.98306 0.89371 0.98352 1.18769 1.04506 0.91512 0.82307 1.91534 1.93794 1.78874 1.46657 1.21573 0.98918 1.01970 0.90364 0.94860 0.96791 0.88997 0.92677 0.94214 0.89646 0.91878 0.75450 0.91510 0.91433 0.89465 0.81813 0.81574 0.83052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.68 37.16 0.32 -2.77 16 2 C 0.27 6.15 2.62 -69.08 -0.18 5.97 16 3 H 0.06 1.50 6.91 -51.93 -0.36 1.14 16 4 C -0.52 -13.45 7.99 -34.44 -0.28 -13.73 16 5 H 0.06 1.61 7.33 -52.49 -0.38 1.23 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.01 11.32 55.43 0.63 -23.38 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 12 N -0.99 -18.64 2.79 -115.85 -0.32 -18.96 16 13 C 0.09 1.44 9.41 59.85 0.56 2.01 16 14 S 2.78 50.41 6.12 -107.50 -0.66 49.75 16 15 O -0.97 -21.54 16.70 -57.17 -0.95 -22.50 16 16 O -1.00 -19.26 16.08 -57.17 -0.92 -20.18 16 17 N -1.13 -14.89 5.49 -5.88 -0.03 -14.92 16 18 C 0.20 2.14 3.15 -69.08 -0.22 1.92 16 19 H 0.10 1.10 7.39 -51.93 -0.38 0.72 16 20 C -0.18 -1.78 9.49 37.16 0.35 -1.43 16 21 C -0.10 -1.03 4.96 -104.49 -0.52 -1.54 16 22 C 0.10 1.03 10.33 -17.54 -0.18 0.84 16 23 N -0.45 -4.93 10.36 -13.20 -0.14 -5.07 16 24 C 0.07 0.65 11.17 -17.47 -0.20 0.45 16 25 C 0.05 0.48 7.34 -39.28 -0.29 0.19 16 26 F -0.13 -1.26 17.28 2.25 0.04 -1.22 16 27 C -0.10 -0.95 9.81 -39.21 -0.38 -1.33 16 28 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 29 H 0.01 0.24 7.41 -51.93 -0.38 -0.15 16 30 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.04 0.51 6.22 -51.93 -0.32 0.19 16 33 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 34 H 0.06 0.95 7.02 -51.93 -0.36 0.58 16 35 H 0.41 4.72 7.11 -34.47 -0.25 4.47 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.02 4.49 -51.93 -0.23 0.79 16 39 H 0.16 1.45 6.83 -52.49 -0.36 1.09 16 40 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -31.73 349.43 -8.15 -39.89 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.94 Total: 3.56 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.10 Total: -7.81 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: 0.14 Total: -62.34 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -1.87 Total: -42.67 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 50.41 SS G_CDS: -0.66 Total: 49.75 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.73 -8.15 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337743462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.013 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds