Wall clock time and date at job start Tue Mar 31 2020 17:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46768 * 2 1 4 4 C 1.50703 * 109.47112 * 240.00118 * 2 1 3 5 5 H 1.07998 * 120.00148 * 240.00355 * 4 2 1 6 6 C 1.37879 * 119.99611 * 60.00142 * 4 2 1 7 7 N 1.31507 * 120.00233 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99792 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47077 * 89.99758 * 8 6 4 10 10 H 1.48498 * 109.47134 * 209.99762 * 8 6 4 11 11 H 1.48500 * 109.47132 * 329.99841 * 8 6 4 12 12 N 1.46496 * 109.46955 * 120.00285 * 2 1 3 13 13 C 1.46503 * 120.00277 * 60.00515 * 12 2 1 14 14 S 1.65602 * 119.99866 * 239.99999 * 12 2 1 15 15 O 1.42101 * 106.40151 * 336.46011 * 14 12 2 16 16 O 1.42102 * 106.40102 * 203.54424 * 14 12 2 17 17 N 1.65597 * 107.21954 * 90.00214 * 14 12 2 18 18 C 1.46499 * 119.99960 * 64.99692 * 17 14 12 19 19 H 1.09001 * 109.47247 * 25.00460 * 18 17 14 20 20 C 1.53002 * 109.47410 * 265.00215 * 18 17 14 21 21 C 1.50706 * 109.47104 * 145.00012 * 18 17 14 22 22 C 1.38233 * 120.39963 * 40.00037 * 21 18 17 23 23 N 1.31854 * 120.81857 * 179.97438 * 22 21 18 24 24 C 1.31869 * 121.74590 * 359.97438 * 23 22 21 25 25 C 1.38416 * 120.73050 * 359.97438 * 24 23 22 26 26 F 1.35105 * 120.44453 * 180.02562 * 25 24 23 27 27 C 1.38591 * 120.40703 * 219.72502 * 21 18 17 28 28 H 1.09005 * 109.47116 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47151 * 299.99286 * 1 2 3 30 30 H 1.09000 * 109.46814 * 60.00074 * 1 2 3 31 31 H 0.97002 * 120.00213 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.46674 * 269.99689 * 13 12 2 33 33 H 1.08996 * 109.47204 * 29.99511 * 13 12 2 34 34 H 1.08995 * 109.47198 * 150.00011 * 13 12 2 35 35 H 0.97000 * 119.99853 * 245.00378 * 17 14 12 36 36 H 1.09001 * 109.46613 * 180.02562 * 20 18 17 37 37 H 1.09005 * 109.46869 * 299.99872 * 20 18 17 38 38 H 1.09002 * 109.47114 * 59.99973 * 20 18 17 39 39 H 1.07999 * 119.59840 * 0.02562 * 22 21 18 40 40 H 1.08002 * 119.63423 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.80091 * 359.97438 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3225 -1.1193 -4.0080 9 1 1.3448 -2.1614 -4.4125 10 1 2.4872 -0.1400 -5.1120 11 1 3.6309 -1.7563 -3.7121 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.5794 1.1829 1.5749 16 8 3.7119 -0.8790 2.9814 17 7 1.9607 0.8089 3.3998 18 6 1.1510 -0.0354 4.2816 19 1 1.6297 -1.0083 4.3934 20 6 -0.2415 -0.2189 3.6747 21 6 1.0277 0.6218 5.6322 22 6 0.8463 1.9886 5.7311 23 7 0.7369 2.5721 6.9085 24 6 0.7947 1.8840 8.0319 25 6 0.9735 0.5115 8.0123 26 9 1.0314 -0.1878 9.1668 27 6 1.0891 -0.1375 6.7900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7082 1.1610 -3.4843 32 1 0.7376 -2.1445 1.9992 33 1 1.5296 -2.5969 0.4707 34 1 2.4629 -2.5819 1.9862 35 1 1.9054 1.7749 3.4682 36 1 -0.8440 -0.8467 4.3311 37 1 -0.7202 0.7540 3.5630 38 1 -0.1523 -0.6943 2.6979 39 1 0.7926 2.5859 4.8330 40 1 0.7015 2.3970 8.9777 41 1 1.2253 -1.2078 6.7429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337743462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:59 Heat of formation + Delta-G solvation = -105.525485 kcal Electronic energy + Delta-G solvation = -27183.934300 eV Core-core repulsion = 23139.511240 eV Total energy + Delta-G solvation = -4044.423059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.115 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.02067 -41.35533 -38.38324 -37.99283 -37.43690 -36.88797 -34.49362 -33.45808 -31.79228 -30.87278 -30.21396 -27.20432 -26.94036 -25.44978 -24.90152 -22.59229 -22.45432 -20.40404 -19.12581 -18.78102 -18.51738 -18.17111 -17.91176 -17.78378 -17.04654 -16.86728 -16.65343 -16.05401 -15.23590 -15.12982 -14.99454 -14.83982 -14.76538 -14.38768 -14.15374 -14.15082 -13.81812 -13.45972 -13.44322 -13.30792 -13.18258 -13.07062 -12.96440 -12.70270 -12.59570 -12.49815 -12.30330 -12.20377 -12.06477 -11.86923 -11.11645 -10.97653 -10.71809 -10.54796 -10.46450 -9.96913 -9.61042 -8.08893 -6.21512 -0.37959 -0.16707 0.01398 1.43266 1.46251 1.54684 2.01969 2.44786 2.51357 2.65316 2.88446 3.19974 3.28214 3.47226 3.52529 3.70722 3.80397 4.00834 4.04225 4.19650 4.25762 4.45417 4.64149 4.73330 4.77453 4.82147 4.88394 4.94658 5.06914 5.08901 5.18156 5.24589 5.33169 5.47106 5.53981 5.66007 5.72990 5.92538 6.03350 6.22574 6.35574 6.72588 6.86583 7.47274 8.94776 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.026493 B = 0.003174 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.642363 B = 8820.411705 C = 8953.397438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.276 3.724 3 H 0.024 0.976 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.951 3.049 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.991 5.991 13 C 0.085 3.915 14 S 2.796 3.204 15 O -1.016 7.016 16 O -1.008 7.008 17 N -1.116 6.116 18 C 0.194 3.806 19 H 0.109 0.891 20 C -0.174 4.174 21 C -0.106 4.106 22 C 0.092 3.908 23 N -0.473 5.473 24 C 0.069 3.931 25 C 0.045 3.955 26 F -0.131 7.131 27 C -0.099 4.099 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.263 0.737 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.421 0.579 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.172 0.828 40 H 0.189 0.811 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.266 -2.542 19.207 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.171 3.829 3 H 0.042 0.958 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.833 5.833 13 C -0.060 4.060 14 S 2.806 3.194 15 O -1.001 7.001 16 O -0.991 6.991 17 N -0.878 5.878 18 C 0.086 3.914 19 H 0.127 0.873 20 C -0.233 4.233 21 C -0.110 4.110 22 C -0.066 4.066 23 N -0.180 5.180 24 C -0.089 4.089 25 C 0.024 3.976 26 F -0.110 7.110 27 C -0.126 4.126 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.257 0.743 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.189 0.811 40 H 0.206 0.794 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.475 -1.701 19.132 19.722 hybrid contribution 0.180 -0.764 -0.961 1.241 sum -4.294 -2.465 18.171 18.833 Atomic orbital electron populations 1.21924 0.96501 1.00251 1.00624 1.18371 0.92390 0.91225 0.80879 0.95772 1.21694 1.31475 1.13002 0.91563 0.92460 1.25579 0.95315 0.95690 1.01512 1.69968 1.37354 1.23639 1.24213 0.85662 0.78772 0.78434 0.79370 1.19555 1.21252 1.20054 1.57472 1.69855 1.21015 1.34996 1.21613 1.00878 0.80611 1.02917 1.01197 0.73515 0.72375 0.72359 1.93564 1.75784 1.57506 1.73205 1.93510 1.69790 1.61195 1.74595 1.56022 1.61782 1.18041 1.51942 1.19740 0.93248 0.93418 0.84967 0.87317 1.22510 0.94470 1.03958 1.02344 1.20805 0.99962 0.95043 0.95145 1.22892 0.95086 0.92338 0.96242 1.67827 1.12013 1.39725 0.98445 1.23323 0.97131 0.89604 0.98842 1.18809 1.04803 0.91621 0.82374 1.91535 1.93839 1.78879 1.46700 1.21801 0.97808 1.02998 0.89948 0.93902 0.93868 0.91997 0.92761 0.90641 0.91018 0.90957 0.74315 0.89118 0.91237 0.90833 0.81059 0.79419 0.81132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 8.68 71.98 0.62 -4.86 16 2 C 0.28 12.68 2.62 44.25 0.12 12.79 16 3 H 0.02 1.29 6.91 -2.39 -0.02 1.27 16 4 C -0.54 -27.97 7.99 25.60 0.20 -27.77 16 5 H 0.06 2.96 7.33 -2.91 -0.02 2.94 16 6 C 0.02 1.00 5.30 84.66 0.45 1.45 16 7 N -0.91 -49.98 11.32 21.45 0.24 -49.73 16 8 Si 0.95 42.40 29.54 68.60 2.03 44.43 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 N -0.99 -36.81 2.79 -520.45 -1.45 -38.26 16 13 C 0.09 2.57 9.41 127.77 1.20 3.77 16 14 S 2.80 100.19 6.12 -56.49 -0.35 99.84 16 15 O -1.02 -46.04 16.70 -128.00 -2.14 -48.18 16 16 O -1.01 -37.92 16.08 -128.00 -2.06 -39.97 16 17 N -1.12 -27.93 5.49 -172.51 -0.95 -28.88 16 18 C 0.19 3.76 3.15 44.25 0.14 3.90 16 19 H 0.11 2.01 7.39 -2.39 -0.02 1.99 16 20 C -0.17 -3.01 9.49 71.98 0.68 -2.32 16 21 C -0.11 -1.89 4.96 -19.78 -0.10 -1.99 16 22 C 0.09 1.73 10.33 84.69 0.87 2.61 16 23 N -0.47 -9.52 10.36 -195.66 -2.03 -11.54 16 24 C 0.07 1.16 11.17 84.73 0.95 2.11 16 25 C 0.05 0.76 7.34 22.47 0.17 0.93 16 26 F -0.13 -2.25 17.28 44.97 0.78 -1.47 16 27 C -0.10 -1.59 9.81 22.51 0.22 -1.37 16 28 H 0.04 1.64 7.67 -2.38 -0.02 1.62 16 29 H 0.04 1.47 7.41 -2.39 -0.02 1.46 16 30 H 0.06 2.96 6.07 -2.39 -0.01 2.94 16 31 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 32 H 0.08 1.73 6.22 -2.39 -0.01 1.71 16 33 H 0.07 2.37 7.02 -2.39 -0.02 2.35 16 34 H 0.07 2.04 7.02 -2.39 -0.02 2.02 16 35 H 0.42 9.22 7.11 -96.75 -0.69 8.53 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 1.49 4.49 -2.39 -0.01 1.48 16 39 H 0.17 2.80 6.83 -2.91 -0.02 2.78 16 40 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -68.41 349.43 0.00 -68.41 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.39 Total: 16.12 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 5.53 Total: -10.76 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -4.18 Total: -128.42 kcal Atomic # 8 Polarization: -83.96 SS G_CDS: -4.20 Total: -88.15 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.78 Total: -1.47 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 100.19 SS G_CDS: -0.35 Total: 99.84 kcal Total: -68.41 0.00 -68.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337743462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.119 kcal (2) G-P(sol) polarization free energy of solvation -68.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds