Wall clock time and date at job start Tue Mar 31 2020 17:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46580 * 2 1 4 4 C 1.50696 * 109.47335 * 120.00139 * 2 1 3 5 5 H 1.08005 * 120.00069 * 120.00582 * 4 2 1 6 6 C 1.37876 * 120.00199 * 299.99826 * 4 2 1 7 7 N 1.31512 * 119.99826 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00113 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47125 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46816 * 120.00277 * 8 6 4 11 11 H 1.48498 * 109.47357 * 240.00288 * 8 6 4 12 12 N 1.46504 * 109.46945 * 240.00573 * 2 1 3 13 13 C 1.46494 * 119.99742 * 299.99410 * 12 2 1 14 14 S 1.65599 * 119.99877 * 119.99774 * 12 2 1 15 15 O 1.42104 * 106.39905 * 156.45647 * 14 12 2 16 16 O 1.42095 * 106.40452 * 23.53916 * 14 12 2 17 17 N 1.65602 * 107.21657 * 269.99379 * 14 12 2 18 18 C 1.46498 * 119.99612 * 65.28266 * 17 14 12 19 19 H 1.09004 * 109.47085 * 334.72273 * 18 17 14 20 20 C 1.53000 * 109.47461 * 94.72043 * 18 17 14 21 21 C 1.50696 * 109.46927 * 214.72190 * 18 17 14 22 22 C 1.38235 * 120.40748 * 319.72193 * 21 18 17 23 23 N 1.31853 * 120.82494 * 179.72552 * 22 21 18 24 24 C 1.31867 * 121.74667 * 0.54135 * 23 22 21 25 25 C 1.38430 * 120.72714 * 359.74417 * 24 23 22 26 26 F 1.35101 * 120.44095 * 179.97438 * 25 24 23 27 27 C 1.38589 * 120.40934 * 140.00051 * 21 18 17 28 28 H 1.08999 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46923 * 299.99510 * 1 2 3 30 30 H 1.08999 * 109.47350 * 59.99905 * 1 2 3 31 31 H 0.97003 * 119.99945 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.47452 * 270.00183 * 13 12 2 33 33 H 1.09002 * 109.47670 * 30.00345 * 13 12 2 34 34 H 1.09002 * 109.47109 * 150.00174 * 13 12 2 35 35 H 0.97001 * 119.99942 * 244.99790 * 17 14 12 36 36 H 1.09003 * 109.47308 * 179.97438 * 20 18 17 37 37 H 1.09005 * 109.47224 * 300.00116 * 20 18 17 38 38 H 1.09004 * 109.46783 * 60.00045 * 20 18 17 39 39 H 1.08007 * 119.58847 * 0.02562 * 22 21 18 40 40 H 1.07992 * 119.63752 * 179.73156 * 24 23 22 41 41 H 1.08001 * 120.79809 * 0.02562 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3215 -1.1204 4.0078 9 1 3.1466 -2.2871 3.6036 10 1 3.1468 -0.1874 4.8164 11 1 1.1663 -1.5868 4.8160 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0930 -1.4281 14 16 2.9703 0.1144 -2.2863 15 8 3.7118 -0.8787 -2.9816 16 8 3.5793 1.1831 -1.5749 17 7 1.9605 0.8092 -3.3998 18 6 1.0332 1.8662 -2.9886 19 1 0.8125 1.7628 -1.9262 20 6 1.6709 3.2329 -3.2463 21 6 -0.2436 1.7503 -3.7806 22 6 -0.2059 1.4420 -5.1276 23 7 -1.3182 1.3333 -5.8272 24 6 -2.5032 1.5224 -5.2803 25 6 -2.6201 1.8396 -3.9380 26 9 -3.8370 2.0326 -3.3837 27 6 -1.4698 1.9570 -3.1687 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.7083 1.1607 3.4845 32 1 2.4158 -2.7376 -0.9718 33 1 0.6905 -2.3002 -0.9848 34 1 1.6238 -2.2851 -2.5003 35 1 1.9859 0.5192 -4.3251 36 1 0.9807 4.0193 -2.9408 37 1 2.5945 3.3167 -2.6735 38 1 1.8916 3.3362 -4.3088 39 1 0.7463 1.2836 -5.6120 40 1 -3.3921 1.4289 -5.8864 41 1 -1.5294 2.2039 -2.1190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337743465.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:04 Heat of formation + Delta-G solvation = -83.647176 kcal Electronic energy + Delta-G solvation = -27672.996806 eV Core-core repulsion = 23629.522461 eV Total energy + Delta-G solvation = -4043.474344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.115 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.14131 -40.48993 -36.99806 -36.42663 -36.19433 -35.29296 -32.64228 -32.53346 -30.87873 -29.30965 -29.15219 -25.67406 -25.24280 -24.56925 -24.01928 -21.53936 -20.85905 -19.10550 -17.94564 -17.58421 -17.10572 -17.01263 -16.81954 -16.28502 -15.99307 -15.79532 -15.03557 -14.46433 -14.20689 -14.01465 -13.91590 -13.57955 -13.34361 -13.30993 -13.17923 -12.91145 -12.61665 -12.24416 -12.03350 -11.84169 -11.65941 -11.60468 -11.40146 -11.28202 -11.22920 -11.01882 -10.86909 -10.51576 -10.36071 -10.12084 -9.99630 -9.83090 -9.55303 -9.31872 -9.11185 -8.51567 -8.05980 -6.13960 -4.19827 0.64612 0.83312 1.12945 3.24447 3.28221 3.33141 3.37381 3.46074 3.76392 3.98053 4.19343 4.34991 4.36523 4.52786 4.65327 4.85363 4.97438 5.00916 5.18383 5.19486 5.37756 5.48889 5.57515 5.62136 5.73846 5.79222 6.09870 6.12548 6.24245 6.31176 6.37780 6.53743 6.63208 6.70216 6.87653 7.00074 7.38142 7.54590 7.55328 7.70863 7.95566 8.20053 8.82739 9.46540 10.91931 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.004625 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.765041 B = 6052.969344 C = 7253.182605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.265 3.735 3 H 0.060 0.940 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.990 5.990 13 C 0.111 3.889 14 S 2.777 3.223 15 O -0.993 6.993 16 O -0.969 6.969 17 N -1.129 6.129 18 C 0.194 3.806 19 H 0.109 0.891 20 C -0.167 4.167 21 C -0.101 4.101 22 C 0.096 3.904 23 N -0.455 5.455 24 C 0.067 3.933 25 C 0.054 3.946 26 F -0.129 7.129 27 C -0.097 4.097 28 H 0.035 0.965 29 H 0.095 0.905 30 H 0.009 0.991 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.408 0.592 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 2.910 -13.742 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.162 3.838 3 H 0.077 0.923 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.833 5.833 13 C -0.036 4.036 14 S 2.786 3.214 15 O -0.977 6.977 16 O -0.952 6.952 17 N -0.887 5.887 18 C 0.085 3.915 19 H 0.126 0.874 20 C -0.226 4.226 21 C -0.104 4.104 22 C -0.062 4.062 23 N -0.162 5.162 24 C -0.091 4.091 25 C 0.032 3.968 26 F -0.107 7.107 27 C -0.124 4.124 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.241 0.759 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.178 0.822 40 H 0.183 0.817 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.122 2.936 -14.271 15.444 hybrid contribution -0.540 -0.420 1.539 1.684 sum -5.662 2.516 -12.732 14.160 Atomic orbital electron populations 1.22203 0.98374 1.00031 1.00421 1.18779 0.91162 0.93019 0.80799 0.92276 1.21347 1.31517 1.13018 0.89927 0.91852 1.24893 0.94916 0.94988 0.99020 1.69842 1.36593 1.22757 1.23761 0.86443 0.78623 0.79708 0.82661 1.19722 1.20875 1.20997 1.57697 1.70068 1.19965 1.35589 1.21134 1.01691 0.81912 0.98825 1.02090 0.73552 0.73242 0.72510 1.93560 1.69427 1.59963 1.74798 1.93608 1.73618 1.55760 1.72238 1.56474 1.56957 1.51007 1.24248 1.19630 0.84819 0.88141 0.98870 0.87353 1.22331 1.02531 0.94952 1.02747 1.20955 0.95140 0.98776 0.95537 1.22590 0.97050 0.95991 0.90580 1.67750 0.97854 1.12197 1.38388 1.22895 0.96988 0.98151 0.91115 1.18774 0.81032 1.03588 0.93373 1.91541 1.40983 1.92563 1.85639 1.21677 0.90542 0.98387 1.01815 0.94576 0.88686 0.97234 0.92715 0.93188 0.91002 0.93303 0.75867 0.91289 0.89852 0.92028 0.82175 0.81671 0.82712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.84 37.16 0.33 -2.81 16 2 C 0.27 6.04 1.92 -69.08 -0.13 5.90 16 3 H 0.06 1.47 6.75 -51.93 -0.35 1.12 16 4 C -0.52 -13.41 8.37 -34.44 -0.29 -13.70 16 5 H 0.06 1.66 7.65 -52.48 -0.40 1.25 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.71 11.32 55.43 0.63 -23.09 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 12 N -0.99 -19.31 3.12 -115.85 -0.36 -19.67 16 13 C 0.11 1.91 9.53 59.84 0.57 2.48 16 14 S 2.78 50.60 6.01 -107.50 -0.65 49.96 16 15 O -0.99 -19.62 17.21 -57.17 -0.98 -20.61 16 16 O -0.97 -20.83 15.93 -57.17 -0.91 -21.74 16 17 N -1.13 -14.98 5.49 -5.88 -0.03 -15.01 16 18 C 0.19 2.46 3.01 -69.09 -0.21 2.25 16 19 H 0.11 1.58 5.42 -51.93 -0.28 1.30 16 20 C -0.17 -1.92 9.50 37.16 0.35 -1.56 16 21 C -0.10 -1.14 4.96 -104.50 -0.52 -1.66 16 22 C 0.10 1.02 10.32 -17.54 -0.18 0.84 16 23 N -0.45 -5.14 10.36 -13.19 -0.14 -5.27 16 24 C 0.07 0.69 11.17 -17.47 -0.20 0.49 16 25 C 0.05 0.60 7.35 -39.27 -0.29 0.31 16 26 F -0.13 -1.49 17.28 2.25 0.04 -1.45 16 27 C -0.10 -1.12 9.81 -39.22 -0.38 -1.50 16 28 H 0.04 0.73 6.66 -51.93 -0.35 0.38 16 29 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 30 H 0.01 0.16 6.73 -51.93 -0.35 -0.19 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.20 6.43 -51.93 -0.33 0.86 16 34 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 35 H 0.41 4.30 7.12 -34.47 -0.25 4.05 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.11 7.61 -51.93 -0.40 0.72 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.16 1.36 6.84 -52.48 -0.36 1.00 16 40 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.16 1.71 8.03 -52.49 -0.42 1.29 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -31.08 351.54 -8.20 -39.27 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.03 Total: 4.09 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.04 Total: -7.38 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: 0.10 Total: -63.04 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -1.89 Total: -42.35 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 50.60 SS G_CDS: -0.65 Total: 49.96 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.08 -8.20 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337743465.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.374 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds