Wall clock time and date at job start Tue Mar 31 2020 17:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47541 * 2 1 4 4 N 1.46499 * 109.47418 * 120.00397 * 2 1 3 5 5 S 1.65604 * 119.99689 * 265.00134 * 4 2 1 6 6 O 1.42101 * 106.40024 * 311.45192 * 5 4 2 7 7 O 1.42097 * 106.39867 * 178.53902 * 5 4 2 8 8 N 1.65597 * 107.21894 * 64.99685 * 5 4 2 9 9 C 1.46500 * 120.00076 * 269.99600 * 8 5 4 10 10 C 1.46500 * 119.99996 * 90.00242 * 8 5 4 11 11 H 1.09002 * 109.47129 * 359.97438 * 10 8 5 12 12 C 1.52997 * 109.47473 * 119.99730 * 10 8 5 13 13 C 1.50708 * 109.47008 * 239.99898 * 10 8 5 14 14 H 1.08000 * 119.99723 * 359.97438 * 13 10 8 15 15 C 1.37873 * 119.99930 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99779 * 179.97438 * 15 13 10 17 17 Si 1.86795 * 120.00284 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.47308 * 89.99617 * 17 15 13 19 19 H 1.48501 * 109.47369 * 209.99691 * 17 15 13 20 20 H 1.48502 * 109.47235 * 329.99860 * 17 15 13 21 21 C 1.50701 * 109.47160 * 240.00415 * 2 1 3 22 22 C 1.38238 * 120.40364 * 280.00043 * 21 2 1 23 23 N 1.31843 * 120.82040 * 179.97438 * 22 21 2 24 24 C 1.31869 * 121.75008 * 0.02562 * 23 22 21 25 25 C 1.38419 * 120.72832 * 359.97115 * 24 23 22 26 26 F 1.35100 * 120.44411 * 180.02562 * 25 24 23 27 27 C 1.38593 * 120.40688 * 99.71643 * 21 2 1 28 28 H 1.09000 * 109.47547 * 59.99584 * 1 2 3 29 29 H 1.09004 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46855 * 299.99643 * 1 2 3 31 31 H 0.96992 * 119.99986 * 84.99693 * 4 2 1 32 32 H 1.08994 * 109.47032 * 270.00329 * 9 8 5 33 33 H 1.08998 * 109.46624 * 30.00124 * 9 8 5 34 34 H 1.08998 * 109.46783 * 149.99869 * 9 8 5 35 35 H 1.09002 * 109.47153 * 59.99757 * 12 10 8 36 36 H 1.09001 * 109.46832 * 299.99948 * 12 10 8 37 37 H 1.09004 * 109.47261 * 179.97438 * 12 10 8 38 38 H 0.96999 * 119.99874 * 180.02562 * 16 15 13 39 39 H 1.07995 * 119.58766 * 359.97438 * 22 21 2 40 40 H 1.08004 * 119.63651 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.80061 * 0.02562 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 16 2.4122 0.1771 2.5505 6 8 3.2437 1.2442 2.1155 7 8 2.8124 -0.7699 3.5314 8 7 1.0168 0.8703 3.1115 9 6 0.6185 2.1993 2.6410 10 6 0.1808 0.1545 4.0784 11 1 0.6345 -0.8097 4.3074 12 6 0.0629 0.9806 5.3608 13 6 -1.1908 -0.0626 3.4928 14 1 -1.4171 0.2971 2.4999 15 6 -2.1566 -0.7202 4.2246 16 7 -3.3537 -0.9092 3.7138 17 14 -1.7654 -1.3416 5.9422 18 1 -2.0853 -0.2852 6.9356 19 1 -2.5774 -2.5517 6.2278 20 1 -0.3225 -1.6818 6.0289 21 6 2.0323 -0.7103 -1.2305 22 6 2.0703 -2.0915 -1.2745 23 7 2.5077 -2.7214 -2.3470 24 6 2.9245 -2.0679 -3.4139 25 6 2.9159 -0.6841 -3.4438 26 9 3.3437 -0.0204 -4.5401 27 6 2.4563 0.0130 -2.3341 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.1110 -1.6562 1.1947 32 1 1.0440 2.9592 3.2963 33 1 0.9839 2.3496 1.6251 34 1 -0.4686 2.2776 2.6515 35 1 -0.3910 1.9448 5.1315 36 1 1.0549 1.1376 5.7843 37 1 -0.5596 0.4483 6.0800 38 1 -4.0333 -1.3716 4.2288 39 1 1.7375 -2.6616 -0.4198 40 1 3.2764 -2.6185 -4.2738 41 1 2.4339 1.0928 -2.3294 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337743467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:08 Heat of formation + Delta-G solvation = -75.841863 kcal Electronic energy + Delta-G solvation = -27423.205649 eV Core-core repulsion = 23380.069769 eV Total energy + Delta-G solvation = -4043.135881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.115 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.22300 -40.50378 -37.04184 -36.69823 -36.27272 -35.47423 -32.59793 -32.56776 -30.88779 -30.13656 -29.15245 -25.82113 -25.15233 -24.51218 -24.05964 -21.52349 -21.01914 -19.18166 -18.01798 -17.64904 -17.31666 -17.03227 -16.91786 -16.49253 -16.05737 -15.75373 -15.37924 -14.65065 -14.24516 -14.07156 -13.84131 -13.71048 -13.40528 -13.35038 -13.19646 -12.88772 -12.58042 -12.41153 -12.22909 -12.13734 -11.96799 -11.76232 -11.60413 -11.45645 -11.35133 -11.26823 -11.02765 -10.61715 -10.19492 -10.09258 -9.85050 -9.68863 -9.48810 -9.44253 -9.10993 -8.71994 -8.20593 -6.23316 -4.24920 0.62562 0.78327 1.05134 3.18448 3.19842 3.32454 3.34187 3.38476 3.70994 3.91979 4.13805 4.27755 4.34510 4.46711 4.60976 4.76767 4.90815 4.92410 5.09063 5.24330 5.35783 5.49842 5.54492 5.55739 5.73536 5.96727 5.99750 6.09248 6.15331 6.22464 6.32844 6.35721 6.45523 6.56839 6.60236 6.79164 7.00916 7.22731 7.30435 7.55122 7.55910 8.34605 8.78626 9.37822 10.88314 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.003922 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.682970 B = 7138.166527 C = 7739.796181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.196 3.804 3 H 0.100 0.900 4 N -1.122 6.122 5 S 2.785 3.215 6 O -0.992 6.992 7 O -0.980 6.980 8 N -0.983 5.983 9 C 0.100 3.900 10 C 0.239 3.761 11 H 0.057 0.943 12 C -0.159 4.159 13 C -0.529 4.529 14 H 0.088 0.912 15 C 0.078 3.922 16 N -0.892 5.892 17 Si 0.876 3.124 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.262 1.262 21 C -0.100 4.100 22 C 0.100 3.900 23 N -0.453 5.453 24 C 0.068 3.932 25 C 0.050 3.950 26 F -0.131 7.131 27 C -0.102 4.102 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.413 0.587 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.033 0.967 37 H 0.049 0.951 38 H 0.266 0.734 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.015 2.258 -10.908 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.088 3.912 3 H 0.118 0.882 4 N -0.881 5.881 5 S 2.793 3.207 6 O -0.975 6.975 7 O -0.964 6.964 8 N -0.825 5.825 9 C -0.046 4.046 10 C 0.134 3.866 11 H 0.075 0.925 12 C -0.218 4.218 13 C -0.568 4.568 14 H 0.106 0.894 15 C -0.126 4.126 16 N -0.529 5.529 17 Si 0.706 3.294 18 H -0.204 1.204 19 H -0.222 1.222 20 H -0.187 1.187 21 C -0.103 4.103 22 C -0.057 4.057 23 N -0.160 5.160 24 C -0.091 4.091 25 C 0.028 3.972 26 F -0.109 7.109 27 C -0.129 4.129 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.247 0.753 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.183 0.817 40 H 0.184 0.816 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.731 1.581 -10.540 14.431 hybrid contribution -0.364 0.233 0.560 0.707 sum 9.367 1.814 -9.980 13.807 Atomic orbital electron populations 1.22493 0.92225 1.04501 1.04034 1.19611 0.95333 0.95272 0.80971 0.88200 1.56206 1.83724 1.19944 1.28194 1.01769 0.73411 0.73000 0.72509 1.93562 1.65352 1.55912 1.82711 1.93598 1.81713 1.63110 1.57979 1.57456 1.42619 1.26427 1.55977 1.21323 1.03060 0.82914 0.97285 1.19104 0.91708 0.90810 0.84947 0.92513 1.22417 0.99198 1.01478 0.98691 1.21230 0.93673 1.38032 1.03851 0.89444 1.24868 0.94804 0.95146 0.97766 1.69861 1.03431 1.41735 1.37852 0.87039 0.79072 0.78017 0.85307 1.20379 1.22243 1.18652 1.20974 0.98186 0.95231 0.95960 1.22712 0.95319 0.91431 0.96270 1.67781 1.08817 1.39830 0.99545 1.22928 0.98533 0.89637 0.97960 1.18763 1.01697 0.91820 0.84910 1.91527 1.87420 1.80788 1.51199 1.21559 0.97688 1.01883 0.91757 0.91925 0.91140 0.88733 0.75258 0.93545 0.92926 0.89475 0.92253 0.94744 0.93306 0.92429 0.81736 0.81634 0.83107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.50 37.15 0.35 -1.89 16 2 C 0.20 2.38 3.15 -69.08 -0.22 2.16 16 3 H 0.10 1.14 6.96 -51.93 -0.36 0.78 16 4 N -1.12 -15.53 5.49 -5.88 -0.03 -15.56 16 5 S 2.78 48.08 6.07 -107.50 -0.65 47.43 16 6 O -0.99 -18.10 16.55 -57.17 -0.95 -19.04 16 7 O -0.98 -19.96 16.70 -57.17 -0.95 -20.91 16 8 N -0.98 -17.61 2.79 -115.85 -0.32 -17.93 16 9 C 0.10 1.53 8.15 59.85 0.49 2.01 16 10 C 0.24 5.08 2.21 -69.08 -0.15 4.93 16 11 H 0.06 1.30 5.97 -51.93 -0.31 0.99 16 12 C -0.16 -3.22 8.67 37.16 0.32 -2.89 16 13 C -0.53 -12.65 8.57 -34.44 -0.30 -12.94 16 14 H 0.09 2.15 5.83 -52.49 -0.31 1.85 16 15 C 0.08 2.01 5.45 -17.82 -0.10 1.91 16 16 N -0.89 -24.63 13.96 55.43 0.77 -23.86 16 17 Si 0.88 20.34 24.37 -169.99 -4.14 16.20 16 18 H -0.28 -6.28 6.87 56.52 0.39 -5.90 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.26 -5.97 6.53 56.52 0.37 -5.60 16 21 C -0.10 -1.12 4.96 -104.49 -0.52 -1.64 16 22 C 0.10 1.16 10.33 -17.55 -0.18 0.98 16 23 N -0.45 -5.39 10.36 -13.20 -0.14 -5.53 16 24 C 0.07 0.70 11.17 -17.47 -0.20 0.50 16 25 C 0.05 0.51 7.34 -39.28 -0.29 0.23 16 26 F -0.13 -1.35 17.28 2.25 0.04 -1.32 16 27 C -0.10 -1.04 9.81 -39.21 -0.38 -1.43 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.42 4.85 -51.93 -0.25 1.17 16 31 H 0.41 5.06 7.11 -34.47 -0.25 4.82 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 34 H 0.09 1.39 7.02 -51.93 -0.36 1.02 16 35 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.17 1.69 6.83 -52.49 -0.36 1.34 16 40 H 0.17 1.26 8.06 -52.48 -0.42 0.83 16 41 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -30.82 343.24 -7.24 -38.06 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.86 Total: 5.37 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -1.17 Total: -8.07 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: 0.28 Total: -62.88 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.90 Total: -39.96 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.14 Total: 16.20 kcal Atomic # 16 Polarization: 48.08 SS G_CDS: -0.65 Total: 47.43 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.82 -7.24 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337743467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.783 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds