Wall clock time and date at job start Tue Mar 31 2020 17:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47541 * 2 1 4 4 N 1.46499 * 109.47418 * 120.00397 * 2 1 3 5 5 S 1.65604 * 119.99689 * 265.00134 * 4 2 1 6 6 O 1.42101 * 106.40024 * 311.45192 * 5 4 2 7 7 O 1.42097 * 106.39867 * 178.53902 * 5 4 2 8 8 N 1.65597 * 107.21894 * 64.99685 * 5 4 2 9 9 C 1.46500 * 120.00076 * 269.99600 * 8 5 4 10 10 C 1.46500 * 119.99996 * 90.00242 * 8 5 4 11 11 H 1.09002 * 109.47129 * 359.97438 * 10 8 5 12 12 C 1.52997 * 109.47473 * 119.99730 * 10 8 5 13 13 C 1.50708 * 109.47008 * 239.99898 * 10 8 5 14 14 H 1.08000 * 119.99723 * 359.97438 * 13 10 8 15 15 C 1.37873 * 119.99930 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99779 * 179.97438 * 15 13 10 17 17 Si 1.86795 * 120.00284 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.47308 * 89.99617 * 17 15 13 19 19 H 1.48501 * 109.47369 * 209.99691 * 17 15 13 20 20 H 1.48502 * 109.47235 * 329.99860 * 17 15 13 21 21 C 1.50701 * 109.47160 * 240.00415 * 2 1 3 22 22 C 1.38238 * 120.40364 * 280.00043 * 21 2 1 23 23 N 1.31843 * 120.82040 * 179.97438 * 22 21 2 24 24 C 1.31869 * 121.75008 * 0.02562 * 23 22 21 25 25 C 1.38419 * 120.72832 * 359.97115 * 24 23 22 26 26 F 1.35100 * 120.44411 * 180.02562 * 25 24 23 27 27 C 1.38593 * 120.40688 * 99.71643 * 21 2 1 28 28 H 1.09000 * 109.47547 * 59.99584 * 1 2 3 29 29 H 1.09004 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46855 * 299.99643 * 1 2 3 31 31 H 0.96992 * 119.99986 * 84.99693 * 4 2 1 32 32 H 1.08994 * 109.47032 * 270.00329 * 9 8 5 33 33 H 1.08998 * 109.46624 * 30.00124 * 9 8 5 34 34 H 1.08998 * 109.46783 * 149.99869 * 9 8 5 35 35 H 1.09002 * 109.47153 * 59.99757 * 12 10 8 36 36 H 1.09001 * 109.46832 * 299.99948 * 12 10 8 37 37 H 1.09004 * 109.47261 * 179.97438 * 12 10 8 38 38 H 0.96999 * 119.99874 * 180.02562 * 16 15 13 39 39 H 1.07995 * 119.58766 * 359.97438 * 22 21 2 40 40 H 1.08004 * 119.63651 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.80061 * 0.02562 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 16 2.4122 0.1771 2.5505 6 8 3.2437 1.2442 2.1155 7 8 2.8124 -0.7699 3.5314 8 7 1.0168 0.8703 3.1115 9 6 0.6185 2.1993 2.6410 10 6 0.1808 0.1545 4.0784 11 1 0.6345 -0.8097 4.3074 12 6 0.0629 0.9806 5.3608 13 6 -1.1908 -0.0626 3.4928 14 1 -1.4171 0.2971 2.4999 15 6 -2.1566 -0.7202 4.2246 16 7 -3.3537 -0.9092 3.7138 17 14 -1.7654 -1.3416 5.9422 18 1 -2.0853 -0.2852 6.9356 19 1 -2.5774 -2.5517 6.2278 20 1 -0.3225 -1.6818 6.0289 21 6 2.0323 -0.7103 -1.2305 22 6 2.0703 -2.0915 -1.2745 23 7 2.5077 -2.7214 -2.3470 24 6 2.9245 -2.0679 -3.4139 25 6 2.9159 -0.6841 -3.4438 26 9 3.3437 -0.0204 -4.5401 27 6 2.4563 0.0130 -2.3341 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.1110 -1.6562 1.1947 32 1 1.0440 2.9592 3.2963 33 1 0.9839 2.3496 1.6251 34 1 -0.4686 2.2776 2.6515 35 1 -0.3910 1.9448 5.1315 36 1 1.0549 1.1376 5.7843 37 1 -0.5596 0.4483 6.0800 38 1 -4.0333 -1.3716 4.2288 39 1 1.7375 -2.6616 -0.4198 40 1 3.2764 -2.6185 -4.2738 41 1 2.4339 1.0928 -2.3294 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337743467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:07 Heat of formation + Delta-G solvation = -98.701730 kcal Electronic energy + Delta-G solvation = -27424.196928 eV Core-core repulsion = 23380.069769 eV Total energy + Delta-G solvation = -4044.127159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.115 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.02111 -41.35631 -38.43258 -38.15263 -37.46619 -36.94028 -34.44694 -33.46075 -31.79856 -31.76373 -30.18460 -27.23914 -26.90609 -25.43607 -24.90592 -22.67267 -22.47689 -20.46911 -19.16436 -18.92292 -18.58154 -18.18342 -18.02850 -17.78350 -17.16847 -16.86992 -16.73027 -16.13882 -15.33778 -15.16753 -14.98483 -14.79762 -14.77971 -14.53993 -14.17694 -14.15002 -14.10983 -13.85582 -13.51548 -13.40765 -13.30084 -13.23530 -13.11040 -12.91161 -12.69056 -12.54699 -12.46646 -12.14156 -11.93788 -11.43915 -11.26015 -10.95352 -10.72670 -10.68321 -10.54545 -9.96457 -9.70512 -8.22240 -6.23731 -0.39628 -0.17269 0.00974 1.33927 1.44001 1.49282 1.90998 2.36670 2.49569 2.60189 2.88060 3.13415 3.27697 3.41481 3.52229 3.69903 3.79920 3.93772 4.02500 4.11066 4.26770 4.43311 4.52852 4.62404 4.67629 4.71087 4.76407 4.87160 4.89284 4.93085 4.97486 5.15443 5.20346 5.30050 5.49816 5.51981 5.54822 5.59915 5.84085 6.05921 6.41723 6.72335 6.84718 7.41230 8.91791 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.003922 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.682970 B = 7138.166527 C = 7739.796181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.199 3.801 3 H 0.113 0.887 4 N -1.116 6.116 5 S 2.800 3.200 6 O -0.999 6.999 7 O -1.012 7.012 8 N -0.986 5.986 9 C 0.094 3.906 10 C 0.241 3.759 11 H 0.043 0.957 12 C -0.161 4.161 13 C -0.508 4.508 14 H 0.076 0.924 15 C 0.030 3.970 16 N -0.934 5.934 17 Si 0.916 3.084 18 H -0.267 1.267 19 H -0.303 1.303 20 H -0.256 1.256 21 C -0.106 4.106 22 C 0.091 3.909 23 N -0.473 5.473 24 C 0.069 3.931 25 C 0.046 3.954 26 F -0.130 7.130 27 C -0.098 4.098 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.420 0.580 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.039 0.961 38 H 0.263 0.737 39 H 0.169 0.831 40 H 0.190 0.810 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.305 3.195 -11.705 15.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.092 3.908 3 H 0.131 0.869 4 N -0.878 5.878 5 S 2.809 3.191 6 O -0.982 6.982 7 O -0.996 6.996 8 N -0.827 5.827 9 C -0.052 4.052 10 C 0.135 3.865 11 H 0.061 0.939 12 C -0.220 4.220 13 C -0.547 4.547 14 H 0.094 0.906 15 C -0.169 4.169 16 N -0.575 5.575 17 Si 0.745 3.255 18 H -0.193 1.193 19 H -0.231 1.231 20 H -0.181 1.181 21 C -0.110 4.110 22 C -0.066 4.066 23 N -0.180 5.180 24 C -0.089 4.089 25 C 0.025 3.975 26 F -0.108 7.108 27 C -0.125 4.125 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.256 0.744 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.186 0.814 40 H 0.207 0.793 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 11.043 2.538 -11.329 16.023 hybrid contribution -0.705 -0.029 0.647 0.958 sum 10.338 2.509 -10.682 15.075 Atomic orbital electron populations 1.22422 0.92854 1.03617 1.03951 1.19683 0.94731 0.95864 0.80567 0.86913 1.55961 1.83520 1.20365 1.27908 1.01165 0.73044 0.72478 0.72419 1.93551 1.65522 1.56325 1.82796 1.93552 1.82361 1.63988 1.59730 1.57371 1.42119 1.27345 1.55912 1.21518 1.02708 0.81849 0.99089 1.18857 0.90438 0.91067 0.86155 0.93911 1.22387 1.00220 1.01591 0.97753 1.21473 0.94500 1.35670 1.03107 0.90592 1.25439 0.94860 0.96068 1.00496 1.69968 1.04474 1.43864 1.39157 0.86370 0.78900 0.77489 0.82709 1.19345 1.23127 1.18066 1.20809 0.99245 0.95036 0.95889 1.22854 0.95382 0.91843 0.96545 1.67815 1.09723 1.40388 1.00115 1.23339 0.97439 0.90001 0.98119 1.18787 1.01826 0.91906 0.84997 1.91534 1.87417 1.80753 1.51137 1.21795 0.96525 1.03025 0.91153 0.89889 0.92445 0.90841 0.74386 0.92199 0.90376 0.90428 0.91135 0.92943 0.94292 0.92747 0.81397 0.79285 0.80989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 9.50 71.98 0.68 -3.49 16 2 C 0.20 4.46 3.15 44.24 0.14 4.60 16 3 H 0.11 2.25 6.96 -2.39 -0.02 2.24 16 4 N -1.12 -29.52 5.49 -172.52 -0.95 -30.47 16 5 S 2.80 92.69 6.07 -56.49 -0.34 92.35 16 6 O -1.00 -34.23 16.55 -128.00 -2.12 -36.35 16 7 O -1.01 -40.37 16.70 -128.00 -2.14 -42.51 16 8 N -0.99 -33.89 2.79 -520.45 -1.45 -35.35 16 9 C 0.09 2.66 8.15 127.77 1.04 3.70 16 10 C 0.24 9.99 2.21 44.25 0.10 10.09 16 11 H 0.04 1.93 5.97 -2.39 -0.01 1.91 16 12 C -0.16 -6.21 8.67 71.98 0.62 -5.59 16 13 C -0.51 -24.20 8.57 25.60 0.22 -23.98 16 14 H 0.08 3.75 5.83 -2.91 -0.02 3.74 16 15 C 0.03 1.58 5.45 84.65 0.46 2.04 16 16 N -0.93 -52.45 13.96 21.45 0.30 -52.16 16 17 Si 0.92 41.67 24.37 68.60 1.67 43.34 16 18 H -0.27 -11.63 6.87 99.48 0.68 -10.94 16 19 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 20 H -0.26 -11.30 6.53 99.48 0.65 -10.65 16 21 C -0.11 -2.19 4.96 -19.78 -0.10 -2.28 16 22 C 0.09 1.99 10.33 84.69 0.87 2.87 16 23 N -0.47 -10.64 10.36 -195.67 -2.03 -12.67 16 24 C 0.07 1.29 11.17 84.73 0.95 2.23 16 25 C 0.05 0.85 7.34 22.47 0.17 1.02 16 26 F -0.13 -2.38 17.28 44.97 0.78 -1.61 16 27 C -0.10 -1.77 9.81 22.51 0.22 -1.55 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 2.15 4.85 -2.38 -0.01 2.13 16 31 H 0.42 9.99 7.11 -96.75 -0.69 9.30 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.79 7.35 -2.39 -0.02 1.78 16 34 H 0.08 2.36 7.02 -2.39 -0.02 2.35 16 35 H 0.07 2.53 7.67 -2.39 -0.02 2.51 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.04 1.58 3.27 -2.38 -0.01 1.57 16 38 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 39 H 0.17 3.38 6.83 -2.91 -0.02 3.36 16 40 H 0.19 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -64.63 343.24 -0.58 -65.22 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.32 Total: 20.53 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 5.38 Total: -10.34 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -4.13 Total: -130.64 kcal Atomic # 8 Polarization: -74.60 SS G_CDS: -4.26 Total: -78.85 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.67 Total: 43.34 kcal Atomic # 16 Polarization: 92.69 SS G_CDS: -0.34 Total: 92.35 kcal Total: -64.63 -0.58 -65.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337743467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.484 kcal (2) G-P(sol) polarization free energy of solvation -64.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds