Wall clock time and date at job start Tue Mar 31 2020 18:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46506 * 109.47642 * 2 1 4 4 C 1.46495 * 119.99908 * 274.24418 * 3 2 1 5 5 C 1.50707 * 109.46825 * 274.99374 * 4 3 2 6 6 H 1.07997 * 120.00017 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99807 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00510 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99840 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47090 * 60.00204 * 9 7 5 11 11 H 1.48505 * 109.47255 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47595 * 300.00178 * 9 7 5 13 13 S 1.65595 * 119.99959 * 94.23607 * 3 2 1 14 14 O 1.42092 * 106.40344 * 194.78289 * 13 3 2 15 15 O 1.42105 * 106.40433 * 327.70229 * 13 3 2 16 16 N 1.65601 * 107.22053 * 81.23812 * 13 3 2 17 17 C 1.46507 * 119.99325 * 63.20859 * 16 13 3 18 18 H 1.08994 * 109.47324 * 335.43354 * 17 16 13 19 19 C 1.53000 * 109.47012 * 95.44015 * 17 16 13 20 20 C 1.50703 * 109.46789 * 215.43764 * 17 16 13 21 21 C 1.38634 * 120.80140 * 339.99876 * 20 17 16 22 22 C 1.38190 * 119.19218 * 179.97438 * 21 20 17 23 23 N 1.31872 * 120.82190 * 0.02562 * 22 21 20 24 24 C 1.31847 * 121.74896 * 359.97438 * 23 22 21 25 25 C 1.38464 * 120.72831 * 359.73918 * 24 23 22 26 26 F 1.35095 * 120.44921 * 180.26399 * 25 24 23 27 27 H 1.09002 * 109.47093 * 295.13745 * 1 2 3 28 28 H 1.09001 * 109.46870 * 55.13600 * 1 2 3 29 29 H 1.08998 * 109.47485 * 175.13416 * 1 2 3 30 30 H 1.09004 * 109.47301 * 240.00182 * 2 1 3 31 31 H 1.09000 * 109.47315 * 120.00463 * 2 1 3 32 32 H 1.08997 * 109.47605 * 34.99201 * 4 3 2 33 33 H 1.09000 * 109.47223 * 154.99565 * 4 3 2 34 34 H 0.97000 * 120.00391 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.00426 * 243.21384 * 16 13 3 36 36 H 1.09000 * 109.47187 * 180.02562 * 19 17 16 37 37 H 1.09003 * 109.46626 * 299.99498 * 19 17 16 38 38 H 1.08994 * 109.47615 * 59.99518 * 19 17 16 39 39 H 1.08006 * 120.40229 * 0.02562 * 21 20 17 40 40 H 1.08001 * 119.58926 * 180.02562 * 22 21 20 41 41 H 1.08005 * 119.63338 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1741 2.1031 -1.2652 5 6 3.5183 1.7804 -1.8654 6 1 4.1896 1.1056 -1.3552 7 6 3.8915 2.3477 -3.0654 8 7 3.0747 3.1707 -3.6860 9 14 5.5579 1.9484 -3.8090 10 1 5.6514 0.4874 -4.0584 11 1 5.7163 2.6809 -5.0911 12 1 6.6311 2.3597 -2.8687 13 16 2.3943 2.1265 1.4302 14 8 2.4931 3.5150 1.1453 15 8 1.5080 1.5943 2.4052 16 7 3.9143 1.6276 1.8583 17 6 5.0597 1.9545 1.0053 18 1 4.7171 2.1178 -0.0164 19 6 5.7368 3.2242 1.5253 20 6 6.0449 0.8143 1.0286 21 6 6.0284 -0.1173 2.0552 22 6 6.9467 -1.1498 2.0432 23 7 7.8319 -1.2555 1.0714 24 6 7.8787 -0.3895 0.0784 25 6 6.9870 0.6682 0.0194 26 9 7.0367 1.5492 -1.0035 27 1 -0.3633 0.4365 0.9303 28 1 -0.3633 0.5875 -0.8432 29 1 -0.3634 -1.0239 -0.0872 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3862 1.8011 -1.9552 33 1 2.1057 3.1755 -1.0825 34 1 3.3374 3.5700 -4.5300 35 1 4.0462 1.1190 2.6736 36 1 6.5888 3.4677 0.8905 37 1 5.0242 4.0489 1.5084 38 1 6.0794 3.0610 2.5470 39 1 5.3060 -0.0374 2.8542 40 1 6.9393 -1.8794 2.8395 41 1 8.6179 -0.5090 -0.7000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337983943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:46 Heat of formation + Delta-G solvation = -102.309480 kcal Electronic energy + Delta-G solvation = -28499.427428 eV Core-core repulsion = 24455.143825 eV Total energy + Delta-G solvation = -4044.283603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.115 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.99747 -41.18038 -38.40240 -37.87172 -37.53533 -36.88611 -34.70296 -32.92131 -31.96058 -31.54385 -30.46643 -28.50294 -25.65909 -24.95290 -24.48855 -23.32757 -22.54535 -20.58336 -19.20322 -18.77883 -18.57271 -18.21879 -18.02212 -17.54996 -17.09168 -16.89223 -16.42964 -15.99521 -15.41289 -15.15433 -15.07692 -14.86930 -14.68124 -14.61500 -14.35864 -14.22538 -13.76958 -13.65901 -13.50806 -13.37214 -13.16733 -13.12584 -12.98098 -12.70998 -12.69328 -12.53652 -12.36022 -12.21538 -11.97048 -11.71561 -11.54222 -10.95098 -10.66435 -10.52023 -10.44886 -9.94404 -9.81374 -8.17609 -6.30479 -0.33777 -0.06351 0.01488 1.43365 1.47591 1.54458 1.91827 2.42885 2.57300 2.62610 3.09016 3.14099 3.29360 3.44770 3.53561 3.75558 3.85538 3.94061 4.16591 4.21122 4.30388 4.43742 4.48802 4.51342 4.68620 4.73505 4.80293 4.85324 4.86675 4.99247 5.15379 5.21217 5.24342 5.27787 5.42222 5.52154 5.62146 5.75661 5.88516 6.08279 6.14580 6.79625 6.79848 7.39996 8.89392 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.009504 B = 0.007729 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.384807 B = 3621.944238 C = 5241.920048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.996 5.996 4 C 0.259 3.741 5 C -0.538 4.538 6 H 0.074 0.926 7 C 0.023 3.977 8 N -0.924 5.924 9 Si 0.929 3.071 10 H -0.274 1.274 11 H -0.299 1.299 12 H -0.233 1.233 13 S 2.797 3.203 14 O -1.010 7.010 15 O -1.000 7.000 16 N -1.106 6.106 17 C 0.168 3.832 18 H 0.114 0.886 19 C -0.160 4.160 20 C -0.075 4.075 21 C -0.135 4.135 22 C 0.096 3.904 23 N -0.476 5.476 24 C 0.072 3.928 25 C 0.028 3.972 26 F -0.132 7.132 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.022 0.978 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.422 0.578 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.170 0.830 40 H 0.202 0.798 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.664 -9.229 12.269 16.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.135 3.865 5 C -0.577 4.577 6 H 0.092 0.908 7 C -0.177 4.177 8 N -0.563 5.563 9 Si 0.755 3.245 10 H -0.199 1.199 11 H -0.225 1.225 12 H -0.156 1.156 13 S 2.805 3.195 14 O -0.993 6.993 15 O -0.984 6.984 16 N -0.869 5.869 17 C 0.061 3.939 18 H 0.131 0.869 19 C -0.219 4.219 20 C -0.085 4.085 21 C -0.154 4.154 22 C -0.060 4.060 23 N -0.184 5.184 24 C -0.085 4.085 25 C 0.006 3.994 26 F -0.110 7.110 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.261 0.739 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.188 0.812 40 H 0.218 0.782 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.638 -9.058 12.427 16.749 hybrid contribution 0.194 0.740 -1.221 1.441 sum 6.832 -8.318 11.206 15.538 Atomic orbital electron populations 1.22211 0.95860 1.03180 1.01588 1.21241 0.94659 0.81159 1.03222 1.57617 1.79360 1.24219 1.22505 1.18761 0.96448 0.91103 0.80214 1.21708 1.02148 1.27780 1.06066 0.90825 1.25639 1.00164 0.94536 0.97396 1.70042 1.37943 1.31083 1.17220 0.86146 0.82153 0.78330 0.77901 1.19911 1.22522 1.15636 1.01297 0.72942 0.73025 0.72200 1.93549 1.86938 1.33630 1.85217 1.93549 1.63296 1.80931 1.60626 1.55797 1.23248 1.72975 1.34892 1.19976 0.84952 0.92106 0.96873 0.86896 1.22209 1.00993 0.96124 1.02541 1.20615 0.95480 0.97799 0.94637 1.22164 1.00782 0.94011 0.98474 1.23421 0.89432 0.96762 0.96422 1.67791 1.23077 1.25527 1.02033 1.23100 0.97749 0.89486 0.98212 1.19081 1.00180 0.92522 0.87589 1.91683 1.95682 1.67228 1.56455 0.92879 0.93585 0.89209 0.90478 0.89433 0.95983 0.96164 0.92702 0.73942 0.91478 0.92018 0.89741 0.81249 0.78177 0.80289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.97 10.24 71.98 0.74 -4.24 16 2 C 0.12 3.90 6.06 86.38 0.52 4.42 16 3 N -1.00 -39.04 2.82 -519.85 -1.47 -40.50 16 4 C 0.26 12.67 5.39 85.64 0.46 13.13 16 5 C -0.54 -27.16 7.51 25.60 0.19 -26.96 16 6 H 0.07 3.50 6.45 -2.91 -0.02 3.49 16 7 C 0.02 1.24 5.46 84.65 0.46 1.70 16 8 N -0.92 -53.21 13.29 21.45 0.28 -52.92 16 9 Si 0.93 41.77 28.58 68.60 1.96 43.73 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.23 -9.77 5.04 99.48 0.50 -9.27 16 13 S 2.80 103.87 5.94 -56.49 -0.34 103.54 16 14 O -1.01 -45.96 15.90 -128.00 -2.04 -48.00 16 15 O -1.00 -37.09 17.16 -128.00 -2.20 -39.29 16 16 N -1.11 -31.49 5.36 -172.51 -0.92 -32.42 16 17 C 0.17 5.32 2.80 44.24 0.12 5.45 16 18 H 0.11 4.53 4.08 -2.39 -0.01 4.52 16 19 C -0.16 -4.70 9.50 71.98 0.68 -4.01 16 20 C -0.08 -2.03 5.12 -19.62 -0.10 -2.13 16 21 C -0.13 -2.58 9.38 22.35 0.21 -2.37 16 22 C 0.10 1.71 11.18 84.68 0.95 2.65 16 23 N -0.48 -10.91 10.36 -195.66 -2.03 -12.94 16 24 C 0.07 1.81 11.17 84.74 0.95 2.75 16 25 C 0.03 0.84 7.29 22.47 0.16 1.00 16 26 F -0.13 -4.67 13.67 44.97 0.61 -4.06 16 27 H 0.05 1.61 7.84 -2.39 -0.02 1.59 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.08 2.50 8.10 -2.38 -0.02 2.48 16 31 H 0.09 2.28 7.87 -2.39 -0.02 2.26 16 32 H 0.02 1.15 8.11 -2.39 -0.02 1.13 16 33 H 0.02 1.13 6.87 -2.39 -0.02 1.11 16 34 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.42 8.55 6.59 -96.75 -0.64 7.91 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 2.05 7.69 -2.39 -0.02 2.04 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.17 2.15 6.07 -2.91 -0.02 2.13 16 40 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16 41 H 0.18 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -69.09 350.09 -0.55 -69.64 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.22 Total: 21.84 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 5.35 Total: -8.61 kcal Atomic # 7 Polarization: -134.65 SS G_CDS: -4.13 Total: -138.78 kcal Atomic # 8 Polarization: -83.06 SS G_CDS: -4.23 Total: -87.29 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.61 Total: -4.06 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.96 Total: 43.73 kcal Atomic # 16 Polarization: 103.87 SS G_CDS: -0.34 Total: 103.54 kcal Total: -69.09 -0.55 -69.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337983943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.673 kcal (2) G-P(sol) polarization free energy of solvation -69.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds