Wall clock time and date at job start Tue Mar 31 2020 17:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47354 * 2 1 4 4 N 1.46507 * 109.47241 * 119.99987 * 2 1 3 5 5 S 1.65596 * 119.99863 * 264.99969 * 4 2 1 6 6 O 1.42103 * 106.39869 * 311.45588 * 5 4 2 7 7 O 1.42099 * 106.40196 * 178.53586 * 5 4 2 8 8 N 1.65594 * 107.21909 * 64.99704 * 5 4 2 9 9 C 1.46505 * 119.99845 * 269.99893 * 8 5 4 10 10 C 1.46500 * 120.00077 * 90.00126 * 8 5 4 11 11 H 1.09000 * 109.47175 * 359.97438 * 10 8 5 12 12 C 1.53006 * 109.46998 * 119.99765 * 10 8 5 13 13 C 1.50697 * 109.46896 * 239.99694 * 10 8 5 14 14 H 1.07994 * 120.00496 * 0.02562 * 13 10 8 15 15 C 1.37887 * 119.99690 * 179.97438 * 13 10 8 16 16 N 1.31507 * 120.00093 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99676 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.47116 * 60.00382 * 17 15 13 19 19 H 1.48503 * 109.46756 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47119 * 300.00049 * 17 15 13 21 21 C 1.50698 * 109.46910 * 239.99727 * 2 1 3 22 22 C 1.38639 * 120.80109 * 264.72298 * 21 2 1 23 23 C 1.38188 * 119.19033 * 179.79880 * 22 21 2 24 24 N 1.31875 * 120.82572 * 0.48838 * 23 22 21 25 25 C 1.31842 * 121.74709 * 359.73866 * 24 23 22 26 26 C 1.38466 * 120.72724 * 0.02562 * 25 24 23 27 27 F 1.35098 * 120.44426 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.47186 * 59.99573 * 1 2 3 29 29 H 1.08993 * 109.47486 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46883 * 300.00377 * 1 2 3 31 31 H 0.96996 * 119.99988 * 84.99330 * 4 2 1 32 32 H 1.09004 * 109.47130 * 270.00127 * 9 8 5 33 33 H 1.08997 * 109.47212 * 29.99879 * 9 8 5 34 34 H 1.09003 * 109.46772 * 150.00492 * 9 8 5 35 35 H 1.09001 * 109.47002 * 179.97438 * 12 10 8 36 36 H 1.08993 * 109.46955 * 300.00226 * 12 10 8 37 37 H 1.09000 * 109.47050 * 60.00054 * 12 10 8 38 38 H 0.96999 * 120.00118 * 179.97438 * 16 15 13 39 39 H 1.08004 * 120.40340 * 0.02562 * 22 21 2 40 40 H 1.08005 * 119.58874 * 180.20410 * 23 22 21 41 41 H 1.07997 * 119.63854 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 16 2.4122 0.1772 2.5505 6 8 3.2438 1.2442 2.1154 7 8 2.8124 -0.7697 3.5315 8 7 1.0169 0.8704 3.1115 9 6 0.6187 2.1994 2.6408 10 6 0.1808 0.1548 4.0784 11 1 0.6344 -0.8095 4.3075 12 6 0.0630 0.9811 5.3607 13 6 -1.1907 -0.0622 3.4928 14 1 -1.4168 0.2966 2.4996 15 6 -2.1567 -0.7198 4.2247 16 7 -1.8809 -1.1581 5.4336 17 14 -3.8565 -0.9894 3.4986 18 1 -3.7416 -1.7913 2.2539 19 1 -4.7037 -1.7158 4.4783 20 1 -4.4752 0.3238 3.1861 21 6 2.0323 -0.7105 -1.2304 22 6 2.3721 -2.0538 -1.1855 23 6 2.8252 -2.6732 -2.3347 24 7 2.9452 -2.0004 -3.4626 25 6 2.6364 -0.7212 -3.5435 26 6 2.1713 -0.0341 -2.4349 27 9 1.8570 1.2767 -2.5242 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.1109 -1.6562 1.1950 32 1 1.0442 2.9595 3.2961 33 1 0.9840 2.3497 1.6250 34 1 -0.4685 2.2779 2.6514 35 1 -0.5595 0.4488 6.0800 36 1 1.0549 1.1381 5.7842 37 1 -0.3909 1.9452 5.1313 38 1 -2.5605 -1.6205 5.9486 39 1 2.2804 -2.6103 -0.2644 40 1 3.0886 -3.7203 -2.3078 41 1 2.7474 -0.2035 -4.4848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337985151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:26 Heat of formation + Delta-G solvation = -81.411342 kcal Electronic energy + Delta-G solvation = -27736.438723 eV Core-core repulsion = 23693.061332 eV Total energy + Delta-G solvation = -4043.377391 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.115 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.16339 -40.40547 -37.04996 -36.60597 -36.15599 -35.35175 -32.67016 -31.99319 -31.19544 -29.45158 -29.08048 -25.57708 -25.29949 -24.72289 -23.71395 -21.59448 -20.86176 -19.23226 -18.02801 -17.62999 -17.20913 -16.98082 -16.40481 -16.39121 -16.01553 -15.50659 -15.18858 -14.59553 -14.28694 -14.15283 -13.85814 -13.57774 -13.48007 -13.34010 -13.24524 -12.82042 -12.33338 -12.13798 -12.06737 -11.86871 -11.65148 -11.50028 -11.40624 -11.27093 -11.25548 -11.02380 -10.91998 -10.50296 -10.28050 -10.13496 -9.99094 -9.88427 -9.46865 -9.30246 -9.17940 -8.53784 -8.04072 -6.15144 -4.23967 0.66932 0.78610 1.13977 3.20218 3.25537 3.27196 3.31391 3.39132 3.78761 4.03027 4.11753 4.21984 4.29544 4.43941 4.59728 4.87065 4.98030 5.15575 5.16281 5.25046 5.36042 5.45999 5.52977 5.60872 5.69499 5.91153 6.09200 6.16629 6.25453 6.34097 6.47337 6.59222 6.82156 6.82525 7.03142 7.09558 7.43629 7.53981 7.56982 7.72765 7.99215 8.19462 8.78467 9.42486 10.89778 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.004582 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.118987 B = 6109.865012 C = 6974.360114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.193 3.807 3 H 0.104 0.896 4 N -1.123 6.123 5 S 2.781 3.219 6 O -0.996 6.996 7 O -0.977 6.977 8 N -0.988 5.988 9 C 0.103 3.897 10 C 0.269 3.731 11 H 0.059 0.941 12 C -0.145 4.145 13 C -0.527 4.527 14 H 0.065 0.935 15 C 0.066 3.934 16 N -0.885 5.885 17 Si 0.895 3.105 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.068 4.068 22 C -0.136 4.136 23 C 0.092 3.908 24 N -0.463 5.463 25 C 0.076 3.924 26 C 0.054 3.946 27 F -0.125 7.125 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.412 0.588 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.012 0.988 37 H 0.032 0.968 38 H 0.264 0.736 39 H 0.147 0.853 40 H 0.165 0.835 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 0.621 -13.501 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.085 3.915 3 H 0.122 0.878 4 N -0.882 5.882 5 S 2.790 3.210 6 O -0.979 6.979 7 O -0.961 6.961 8 N -0.831 5.831 9 C -0.044 4.044 10 C 0.166 3.834 11 H 0.077 0.923 12 C -0.204 4.204 13 C -0.566 4.566 14 H 0.083 0.917 15 C -0.137 4.137 16 N -0.523 5.523 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.078 4.078 22 C -0.156 4.156 23 C -0.065 4.065 24 N -0.171 5.171 25 C -0.083 4.083 26 C 0.031 3.969 27 F -0.104 7.104 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.246 0.754 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.031 0.969 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.164 0.836 40 H 0.183 0.817 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.558 0.419 -13.686 15.182 hybrid contribution -1.781 -0.002 0.240 1.797 sum 4.776 0.417 -13.446 14.275 Atomic orbital electron populations 1.22465 0.92466 1.04186 1.04074 1.19536 0.95267 0.95555 0.81122 0.87823 1.56295 1.83760 1.19879 1.28230 1.01874 0.73636 0.73050 0.72440 1.93554 1.65728 1.55887 1.82764 1.93605 1.81760 1.63120 1.57648 1.57703 1.42966 1.26182 1.56247 1.21260 1.02547 0.83493 0.97062 1.18737 0.89482 0.90779 0.84392 0.92342 1.22055 0.98501 0.99665 1.00227 1.21352 0.96009 1.37499 1.01775 0.91674 1.24908 0.98650 0.95321 0.94817 1.69863 1.34395 1.37944 1.10118 0.86629 0.83968 0.78337 0.78834 1.20312 1.21286 1.20261 1.20648 0.97465 0.95092 0.94602 1.21958 0.99106 0.93726 1.00793 1.22845 0.95545 1.00561 0.87548 1.67724 1.14301 1.07261 1.27813 1.22889 0.96815 0.90887 0.97700 1.18611 1.03103 0.79650 0.95488 1.91533 1.90433 1.31733 1.96672 0.91889 0.91276 0.88714 0.75355 0.93650 0.93278 0.89967 0.88921 0.96908 0.94840 0.92559 0.83575 0.81735 0.81513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 9.50 37.16 0.35 -1.98 16 2 C 0.19 2.60 2.98 -69.08 -0.21 2.39 16 3 H 0.10 1.43 6.80 -51.93 -0.35 1.08 16 4 N -1.12 -16.53 5.40 -5.88 -0.03 -16.57 16 5 S 2.78 51.65 6.07 -107.50 -0.65 50.99 16 6 O -1.00 -19.72 16.55 -57.17 -0.95 -20.66 16 7 O -0.98 -21.25 16.70 -57.17 -0.95 -22.20 16 8 N -0.99 -19.06 2.79 -115.84 -0.32 -19.38 16 9 C 0.10 1.70 8.15 59.85 0.49 2.19 16 10 C 0.27 6.17 2.62 -69.08 -0.18 5.99 16 11 H 0.06 1.50 6.91 -51.93 -0.36 1.14 16 12 C -0.14 -3.31 8.97 37.16 0.33 -2.98 16 13 C -0.53 -12.53 7.99 -34.44 -0.28 -12.81 16 14 H 0.07 1.46 5.58 -52.49 -0.29 1.17 16 15 C 0.07 1.65 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -23.39 11.32 55.43 0.63 -22.76 16 17 Si 0.89 19.54 29.54 -169.99 -5.02 14.52 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 C -0.07 -0.82 5.09 -104.25 -0.53 -1.35 16 22 C -0.14 -1.41 9.36 -39.45 -0.37 -1.78 16 23 C 0.09 0.89 11.18 -17.55 -0.20 0.69 16 24 N -0.46 -5.09 10.36 -13.20 -0.14 -5.23 16 25 C 0.08 0.78 11.17 -17.46 -0.20 0.59 16 26 C 0.05 0.62 7.29 -39.28 -0.29 0.33 16 27 F -0.13 -1.49 16.70 2.25 0.04 -1.46 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.44 4.85 -51.93 -0.25 1.18 16 31 H 0.41 5.24 6.65 -34.47 -0.23 5.01 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.70 7.35 -51.93 -0.38 0.32 16 34 H 0.08 1.37 7.02 -51.93 -0.36 1.00 16 35 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 36 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 38 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 39 H 0.15 1.28 6.19 -52.48 -0.33 0.95 16 40 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 348.45 15.07 5.25 5.25 Total: -1.00 -30.48 348.45 -8.25 -38.74 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.94 Total: 5.91 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.16 Total: -7.15 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: 0.14 Total: -63.94 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.90 Total: -42.86 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 16 Polarization: 51.65 SS G_CDS: -0.65 Total: 50.99 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.48 -8.25 -38.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337985151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.675 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds