Wall clock time and date at job start Tue Mar 31 2020 17:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47041 * 2 1 4 4 C 1.50705 * 109.47139 * 240.00198 * 2 1 3 5 5 H 1.07996 * 119.99737 * 245.45912 * 4 2 1 6 6 C 1.37877 * 119.99768 * 65.45271 * 4 2 1 7 7 N 1.31520 * 120.00125 * 9.62587 * 6 4 2 8 8 Si 1.86797 * 119.99949 * 189.61875 * 6 4 2 9 9 H 1.48504 * 109.47204 * 85.00184 * 8 6 4 10 10 H 1.48495 * 109.47257 * 205.00141 * 8 6 4 11 11 H 1.48493 * 109.47220 * 325.00363 * 8 6 4 12 12 N 1.46505 * 109.47343 * 120.00403 * 2 1 3 13 13 C 1.46501 * 119.99678 * 59.99317 * 12 2 1 14 14 S 1.65593 * 119.99777 * 239.99935 * 12 2 1 15 15 O 1.42109 * 106.40037 * 156.45557 * 14 12 2 16 16 O 1.42098 * 106.40440 * 23.53911 * 14 12 2 17 17 N 1.65596 * 107.21955 * 269.99493 * 14 12 2 18 18 C 1.46500 * 119.99938 * 65.00462 * 17 14 12 19 19 H 1.09002 * 109.46728 * 334.99767 * 18 17 14 20 20 C 1.52996 * 109.47250 * 94.99862 * 18 17 14 21 21 C 1.50696 * 109.47026 * 215.00040 * 18 17 14 22 22 C 1.38634 * 120.80387 * 339.99857 * 21 18 17 23 23 C 1.38192 * 119.19376 * 179.97438 * 22 21 18 24 24 N 1.31876 * 120.81890 * 0.02562 * 23 22 21 25 25 C 1.31832 * 121.75564 * 359.97438 * 24 23 22 26 26 C 1.38467 * 120.72518 * 359.74154 * 25 24 23 27 27 F 1.35101 * 120.44922 * 180.25923 * 26 25 24 28 28 H 1.09002 * 109.46849 * 63.28750 * 1 2 3 29 29 H 1.08998 * 109.47265 * 183.28912 * 1 2 3 30 30 H 1.09003 * 109.46955 * 303.28880 * 1 2 3 31 31 H 0.96998 * 119.99905 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47128 * 270.00334 * 13 12 2 33 33 H 1.09003 * 109.47089 * 30.00674 * 13 12 2 34 34 H 1.09000 * 109.46209 * 150.00241 * 13 12 2 35 35 H 0.96994 * 120.00247 * 245.00355 * 17 14 12 36 36 H 1.09002 * 109.47332 * 60.00275 * 20 18 17 37 37 H 1.09007 * 109.47192 * 180.02562 * 20 18 17 38 38 H 1.09000 * 109.47357 * 299.99904 * 20 18 17 39 39 H 1.07996 * 120.40036 * 359.97438 * 22 21 18 40 40 H 1.07992 * 119.58671 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.64343 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5786 -1.6370 -1.1339 6 6 1.7944 -0.1773 -2.4796 7 7 1.3002 1.0361 -2.5935 8 14 2.1742 -1.1786 -4.0102 9 1 1.0212 -2.0605 -4.3235 10 1 2.4213 -0.2624 -5.1524 11 1 3.3819 -2.0089 -3.7714 12 7 2.0184 -0.6907 1.1961 13 6 1.6643 -2.0933 1.4279 14 16 2.9704 0.1140 2.2861 15 8 2.8228 -0.5648 3.5259 16 8 2.6904 1.4971 2.1193 17 7 4.5437 -0.1044 1.8179 18 6 5.0139 0.4529 0.5473 19 1 4.1700 0.5697 -0.1326 20 6 5.6605 1.8169 0.7967 21 6 6.0274 -0.4789 -0.0655 22 6 6.6886 -1.4184 0.7106 23 6 7.6112 -2.2566 0.1141 24 7 7.8665 -2.1707 -1.1768 25 6 7.2584 -1.2907 -1.9473 26 6 6.3174 -0.4212 -1.4221 27 9 5.6938 0.4750 -2.2178 28 1 -0.3633 0.4620 -0.9180 29 1 -0.3634 -1.0259 0.0590 30 1 -0.3633 0.5641 0.8591 31 1 1.1332 1.4112 -3.4723 32 1 0.7376 -2.1444 1.9992 33 1 1.5294 -2.5969 0.4707 34 1 2.4628 -2.5819 1.9862 35 1 5.1540 -0.6013 2.3850 36 1 6.5044 1.7001 1.4766 37 1 6.0100 2.2318 -0.1488 38 1 4.9274 2.4909 1.2399 39 1 6.4849 -1.4942 1.7685 40 1 8.1302 -2.9904 0.7128 41 1 7.4940 -1.2498 -3.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337985153.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:28 Heat of formation + Delta-G solvation = -103.794624 kcal Electronic energy + Delta-G solvation = -28499.698047 eV Core-core repulsion = 24455.350044 eV Total energy + Delta-G solvation = -4044.348003 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.115 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.94951 -41.18452 -38.46433 -37.90758 -37.68408 -36.91160 -34.48289 -32.93199 -31.96223 -31.01881 -30.47092 -27.24072 -27.02545 -25.64607 -24.49207 -22.71734 -22.48559 -20.60433 -19.13360 -18.71632 -18.45934 -18.28316 -17.97625 -17.58685 -16.95029 -16.82643 -16.47459 -15.93517 -15.27410 -15.15123 -15.03061 -14.88800 -14.74058 -14.48694 -14.34623 -14.21836 -13.77823 -13.54259 -13.41503 -13.28678 -13.19308 -13.11560 -12.96112 -12.81413 -12.69395 -12.65622 -12.35227 -12.20925 -12.15876 -11.88028 -11.28063 -10.94686 -10.66629 -10.50127 -10.44519 -9.95237 -9.69785 -8.12453 -6.21481 -0.35454 -0.06223 0.01121 1.40492 1.43822 1.49497 1.92005 2.43549 2.57159 2.61958 3.06694 3.19045 3.26387 3.39590 3.52450 3.74482 3.84583 4.01765 4.14607 4.20201 4.30078 4.47110 4.66521 4.70935 4.78901 4.79482 4.82796 4.85319 4.94057 4.98599 5.10987 5.19045 5.21331 5.25627 5.56697 5.61232 5.65579 5.82576 5.97216 6.13873 6.27107 6.79284 6.86535 7.46981 8.94304 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.008025 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.264685 B = 3488.440478 C = 5331.157929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H 0.032 0.968 4 C -0.524 4.524 5 H 0.064 0.936 6 C 0.033 3.967 7 N -0.910 5.910 8 Si 0.935 3.065 9 H -0.275 1.275 10 H -0.290 1.290 11 H -0.270 1.270 12 N -0.997 5.997 13 C 0.099 3.901 14 S 2.797 3.203 15 O -1.002 7.002 16 O -1.009 7.009 17 N -1.107 6.107 18 C 0.191 3.809 19 H 0.089 0.911 20 C -0.161 4.161 21 C -0.075 4.075 22 C -0.133 4.133 23 C 0.095 3.905 24 N -0.476 5.476 25 C 0.070 3.930 26 C 0.037 3.963 27 F -0.138 7.138 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.023 0.977 31 H 0.263 0.737 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.424 0.576 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.172 0.828 40 H 0.202 0.798 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.740 -6.131 6.428 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.050 0.950 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.168 4.168 7 N -0.549 5.549 8 Si 0.761 3.239 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.195 1.195 12 N -0.839 5.839 13 C -0.046 4.046 14 S 2.805 3.195 15 O -0.986 6.986 16 O -0.993 6.993 17 N -0.870 5.870 18 C 0.084 3.916 19 H 0.107 0.893 20 C -0.220 4.220 21 C -0.085 4.085 22 C -0.153 4.153 23 C -0.062 4.062 24 N -0.184 5.184 25 C -0.088 4.088 26 C 0.015 3.985 27 F -0.116 7.116 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.262 0.738 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.189 0.811 40 H 0.219 0.781 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 11.840 -5.929 6.569 14.781 hybrid contribution -0.680 0.284 -1.173 1.385 sum 11.160 -5.645 5.396 13.621 Atomic orbital electron populations 1.21881 0.98023 0.99952 0.99477 1.18435 0.91777 0.91767 0.81314 0.94994 1.21416 1.35891 1.08429 0.90545 0.91824 1.25446 0.95136 0.95095 1.01122 1.70054 1.45397 1.14902 1.24498 0.85925 0.78674 0.79019 0.80235 1.20122 1.21574 1.19475 1.57616 1.65007 1.22557 1.38712 1.21394 1.00619 0.80384 1.02212 1.01296 0.72951 0.72948 0.72278 1.93545 1.86241 1.76072 1.42710 1.93557 1.84524 1.34395 1.86786 1.55840 1.29969 1.70759 1.30419 1.19474 0.96138 0.91862 0.84159 0.89329 1.22237 1.01920 0.94663 1.03131 1.20576 0.97604 0.98050 0.92266 1.22160 0.96133 0.94439 1.02568 1.23427 0.94696 0.97595 0.90454 1.67775 1.24442 1.19051 1.07151 1.23076 0.92682 0.91149 1.01856 1.18950 0.97373 0.93052 0.89118 1.91546 1.81106 1.65674 1.73306 0.92924 0.93098 0.95756 0.92793 0.92769 0.90640 0.90563 0.73822 0.89432 0.91394 0.91782 0.81117 0.78118 0.80413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 9.12 71.98 0.66 -5.44 16 2 C 0.27 12.72 1.79 44.25 0.08 12.80 16 3 H 0.03 1.73 6.69 -2.39 -0.02 1.71 16 4 C -0.52 -25.61 7.35 25.60 0.19 -25.42 16 5 H 0.06 3.04 7.16 -2.91 -0.02 3.02 16 6 C 0.03 1.71 5.17 84.65 0.44 2.14 16 7 N -0.91 -49.94 12.17 21.45 0.26 -49.68 16 8 Si 0.93 41.53 29.55 68.60 2.03 43.56 16 9 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 N -1.00 -38.63 3.12 -520.43 -1.62 -40.25 16 13 C 0.10 3.19 9.21 127.77 1.18 4.36 16 14 S 2.80 101.83 6.00 -56.49 -0.34 101.49 16 15 O -1.00 -36.95 17.21 -128.00 -2.20 -39.15 16 16 O -1.01 -44.33 15.96 -128.00 -2.04 -46.38 16 17 N -1.11 -31.32 5.36 -172.53 -0.93 -32.24 16 18 C 0.19 6.06 2.80 44.24 0.12 6.18 16 19 H 0.09 3.62 6.26 -2.39 -0.01 3.60 16 20 C -0.16 -4.60 9.50 71.98 0.68 -3.91 16 21 C -0.07 -2.08 5.12 -19.63 -0.10 -2.18 16 22 C -0.13 -2.66 9.38 22.35 0.21 -2.45 16 23 C 0.10 1.78 11.18 84.68 0.95 2.73 16 24 N -0.48 -11.52 10.36 -195.67 -2.03 -13.54 16 25 C 0.07 1.86 11.17 84.75 0.95 2.80 16 26 C 0.04 1.15 7.29 22.47 0.16 1.31 16 27 F -0.14 -5.08 16.79 44.97 0.76 -4.32 16 28 H 0.05 2.63 6.84 -2.39 -0.02 2.61 16 29 H 0.05 2.10 7.56 -2.39 -0.02 2.09 16 30 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 33 H 0.07 2.48 6.92 -2.39 -0.02 2.47 16 34 H 0.08 2.02 7.79 -2.39 -0.02 2.00 16 35 H 0.42 8.57 6.58 -96.75 -0.64 7.94 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.07 1.93 8.14 -2.38 -0.02 1.92 16 38 H 0.06 2.05 7.64 -2.39 -0.02 2.03 16 39 H 0.17 2.25 6.06 -2.91 -0.02 2.23 16 40 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.18 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -66.65 353.42 -0.17 -66.82 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.43 Total: 20.78 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 5.51 Total: -7.09 kcal Atomic # 7 Polarization: -131.40 SS G_CDS: -4.32 Total: -135.71 kcal Atomic # 8 Polarization: -81.28 SS G_CDS: -4.25 Total: -85.53 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.76 Total: -4.32 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 101.83 SS G_CDS: -0.34 Total: 101.49 kcal Total: -66.65 -0.17 -66.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337985153.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.973 kcal (2) G-P(sol) polarization free energy of solvation -66.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds