Wall clock time and date at job start Tue Mar 31 2020 16:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.46990 * 2 1 4 4 C 1.38681 * 119.89797 * 269.97551 * 3 2 1 5 5 C 1.37854 * 120.65356 * 180.02562 * 4 3 2 6 6 C 1.38965 * 119.97379 * 0.04342 * 5 4 3 7 7 O 1.34910 * 133.10131 * 179.97438 * 6 5 4 8 8 C 1.33824 * 111.35711 * 179.74044 * 7 6 5 9 9 C 1.36147 * 109.82991 * 0.40074 * 8 7 6 10 10 C 1.46987 * 127.14554 * 179.88614 * 9 8 7 11 11 O 1.21682 * 120.00159 * 154.24871 * 10 9 8 12 12 N 1.34786 * 120.00320 * 334.24409 * 10 9 8 13 13 C 1.36948 * 120.00271 * 187.62933 * 12 10 9 14 14 H 1.07994 * 120.00339 * 218.58178 * 13 12 10 15 15 C 1.38984 * 119.99663 * 38.57958 * 13 12 10 16 16 N 1.31406 * 120.00135 * 6.91355 * 15 13 12 17 17 Si 1.86807 * 119.99570 * 186.91068 * 15 13 12 18 18 H 1.48505 * 109.46779 * 90.00181 * 17 15 13 19 19 H 1.48494 * 109.47050 * 210.00083 * 17 15 13 20 20 H 1.48495 * 109.46977 * 330.00035 * 17 15 13 21 21 C 1.46502 * 119.99489 * 7.63332 * 12 10 9 22 22 C 1.50692 * 109.47383 * 88.62117 * 21 12 10 23 23 O 1.20829 * 119.99813 * 359.97438 * 22 21 12 24 24 O 1.34227 * 120.00504 * 179.97438 * 22 21 12 25 25 C 1.45192 * 117.00419 * 179.97438 * 24 22 21 26 26 C 1.40230 * 119.25500 * 359.96441 * 6 5 4 27 27 C 1.37854 * 119.90277 * 90.00271 * 3 2 1 28 28 H 1.09007 * 109.46924 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47131 * 299.99934 * 1 2 3 30 30 H 1.08993 * 109.47101 * 60.00137 * 1 2 3 31 31 H 1.09000 * 109.47131 * 240.00066 * 2 1 3 32 32 H 1.08998 * 109.47401 * 120.00228 * 2 1 3 33 33 H 1.07994 * 119.67956 * 0.02777 * 4 3 2 34 34 H 1.07994 * 120.01333 * 180.02562 * 5 4 3 35 35 H 1.08006 * 125.08819 * 180.24501 * 8 7 6 36 36 H 0.97007 * 119.99758 * 184.76792 * 16 15 13 37 37 H 1.09001 * 109.46522 * 208.62177 * 21 12 10 38 38 H 1.09001 * 109.47044 * 328.61307 * 21 12 10 39 39 H 1.08999 * 109.47271 * 60.00095 * 25 24 22 40 40 H 1.09008 * 109.46976 * 179.97438 * 25 24 22 41 41 H 1.08998 * 109.47513 * 299.99740 * 25 24 22 42 42 H 1.07999 * 120.17734 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2632 2.0723 -1.2022 5 6 2.7231 3.3718 -1.2204 6 6 2.9607 4.0409 -0.0259 7 8 3.4010 5.2830 0.2632 8 6 3.4659 5.4817 1.5850 9 6 3.0722 4.3557 2.2412 10 6 3.0003 4.1552 3.6956 11 8 2.2292 3.3363 4.1595 12 7 3.7887 4.8785 4.5154 13 6 3.8375 4.5860 5.8524 14 1 3.8952 5.3838 6.5779 15 6 3.8127 3.2623 6.2754 16 7 3.8797 2.2896 5.3945 17 14 3.6843 2.8662 8.0965 18 1 2.2537 2.7554 8.4792 19 1 4.3717 1.5792 8.3728 20 1 4.3253 3.9490 8.8850 21 6 4.5933 5.9776 3.9761 22 6 3.7847 7.2490 3.9962 23 8 2.6523 7.2381 4.4173 24 8 4.3224 8.3936 3.5463 25 6 3.4855 9.5791 3.5951 26 6 2.7265 3.3797 1.1883 27 6 2.2614 2.0687 1.1950 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0808 1.5568 -2.1335 34 1 2.8990 3.8694 -2.1626 35 1 3.7853 6.3975 2.0602 36 1 3.7929 1.3674 5.6827 37 1 5.4877 6.1061 4.5857 38 1 4.8826 5.7470 2.9508 39 1 3.1961 9.7773 4.6271 40 1 4.0402 10.4318 3.2035 41 1 2.5921 9.4183 2.9917 42 1 2.0815 1.5609 2.1311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353259503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:48 Heat of formation + Delta-G solvation = -55.116229 kcal Electronic energy + Delta-G solvation = -28965.677308 eV Core-core repulsion = 24879.163761 eV Total energy + Delta-G solvation = -4086.513547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13567 -40.19349 -38.15565 -38.07232 -36.06898 -34.15911 -33.42906 -32.78561 -31.58833 -29.28474 -28.87963 -28.50613 -26.49043 -25.04460 -23.90067 -22.62480 -22.12699 -20.87432 -20.78244 -19.23907 -17.55568 -17.33609 -17.07665 -16.74908 -15.92555 -15.84907 -15.63910 -15.44088 -14.96551 -14.39126 -14.27349 -13.93398 -13.64360 -13.53362 -13.35283 -13.19102 -12.96451 -12.65452 -12.54379 -12.28949 -12.07467 -11.76086 -11.56122 -11.35193 -11.21248 -11.04379 -10.99699 -10.88135 -10.75293 -10.56015 -10.49896 -10.25649 -10.15055 -9.53087 -9.05131 -8.26876 -8.16391 -7.76628 -7.31256 -6.11845 -3.98332 1.19662 1.61875 2.40850 2.52249 2.94392 3.10710 3.28840 3.34482 3.35750 3.95519 4.15208 4.56933 4.77295 4.81539 4.92733 5.04691 5.14479 5.21081 5.23652 5.26748 5.30122 5.38319 5.47971 5.50681 5.55892 5.60709 5.62519 5.69725 5.84438 5.90389 5.95748 6.00146 6.08025 6.24274 6.31957 6.47341 6.56833 6.62847 6.78453 6.89039 6.98395 7.46575 7.50522 8.05662 8.17923 8.87884 9.02723 9.46360 10.16263 10.89159 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.005344 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.935864 B = 5238.614446 C = 7735.064365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.111 4.111 4 C -0.094 4.094 5 C -0.114 4.114 6 C 0.043 3.957 7 O -0.193 6.193 8 C -0.013 4.013 9 C -0.167 4.167 10 C 0.535 3.465 11 O -0.496 6.496 12 N -0.431 5.431 13 C -0.328 4.328 14 H 0.084 0.916 15 C 0.051 3.949 16 N -0.816 5.816 17 Si 0.921 3.079 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.094 3.906 22 C 0.421 3.579 23 O -0.479 6.479 24 O -0.369 6.369 25 C 0.034 3.966 26 C -0.089 4.089 27 C -0.042 4.042 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.207 0.793 36 H 0.266 0.734 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.955 4.039 -11.798 12.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.111 4.111 4 C -0.112 4.112 5 C -0.133 4.133 6 C -0.004 4.004 7 O -0.094 6.094 8 C -0.079 4.079 9 C -0.173 4.173 10 C 0.324 3.676 11 O -0.370 6.370 12 N -0.153 5.153 13 C -0.455 4.455 14 H 0.101 0.899 15 C -0.160 4.160 16 N -0.450 5.450 17 Si 0.748 3.252 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.033 4.033 22 C 0.261 3.739 23 O -0.363 6.363 24 O -0.286 6.286 25 C -0.060 4.060 26 C -0.091 4.091 27 C -0.060 4.060 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.223 0.777 36 H 0.076 0.924 37 H 0.137 0.863 38 H 0.126 0.874 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.283 3.573 -11.618 12.158 hybrid contribution -0.189 0.180 1.086 1.117 sum 0.094 3.753 -10.532 11.181 Atomic orbital electron populations 1.21763 0.95009 1.01371 1.02307 1.20447 0.95978 0.92389 1.02721 1.19733 1.02129 0.96755 0.92498 1.20678 0.99526 0.93283 0.97671 1.19751 1.04854 0.94489 0.94161 1.19633 1.01387 0.83851 0.95557 1.83782 1.70425 1.30234 1.24936 1.24820 1.03293 1.00165 0.79665 1.21805 1.05621 0.93516 0.96320 1.16606 0.83098 0.85594 0.82343 1.90617 1.36225 1.34686 1.75512 1.42875 1.37506 1.26826 1.08105 1.19122 1.53883 0.92281 0.80184 0.89854 1.25246 0.96290 0.95451 0.98988 1.69953 1.41137 0.99769 1.34181 0.86040 0.78430 0.77738 0.83010 1.20418 1.21048 1.19694 1.21614 0.94684 0.83799 1.03191 1.25433 0.87778 0.85908 0.74828 1.90706 1.19186 1.85677 1.40721 1.86549 1.46801 1.18087 1.77177 1.23184 0.95273 0.85003 1.02570 1.19522 1.03089 0.95351 0.91132 1.20624 0.94740 0.92142 0.98478 0.92664 0.92274 0.92788 0.91286 0.90832 0.85303 0.85448 0.77739 0.92372 0.86253 0.87357 0.92126 0.88481 0.92185 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 37.16 0.37 -1.33 16 2 C -0.08 -0.97 6.06 -27.89 -0.17 -1.14 16 3 C -0.11 -1.71 5.13 -104.60 -0.54 -2.25 16 4 C -0.09 -1.26 9.67 -39.56 -0.38 -1.65 16 5 C -0.11 -1.66 10.06 -39.45 -0.40 -2.06 16 6 C 0.04 0.78 7.39 -38.56 -0.28 0.49 16 7 O -0.19 -3.47 10.53 5.29 0.06 -3.41 16 8 C -0.01 -0.25 9.66 29.98 0.29 0.04 16 9 C -0.17 -3.81 5.94 -103.26 -0.61 -4.42 16 10 C 0.53 14.32 6.68 -12.71 -0.08 14.24 16 11 O -0.50 -15.10 14.17 5.21 0.07 -15.03 16 12 N -0.43 -10.89 2.06 -117.47 -0.24 -11.13 16 13 C -0.33 -8.93 9.32 -14.99 -0.14 -9.07 16 14 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 15 C 0.05 1.40 4.76 -17.46 -0.08 1.32 16 16 N -0.82 -23.63 10.58 55.50 0.59 -23.05 16 17 Si 0.92 21.49 29.56 -169.99 -5.03 16.47 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 C 0.09 1.81 5.50 -5.20 -0.03 1.79 16 22 C 0.42 7.83 5.92 36.00 0.21 8.05 16 23 O -0.48 -10.74 16.17 -18.75 -0.30 -11.04 16 24 O -0.37 -5.50 10.55 -39.25 -0.41 -5.92 16 25 C 0.03 0.40 10.56 101.05 1.07 1.47 16 26 C -0.09 -1.88 6.33 -104.98 -0.66 -2.55 16 27 C -0.04 -0.82 9.73 -39.40 -0.38 -1.20 16 28 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.21 3.44 3.87 -52.48 -0.20 3.24 16 36 H 0.27 7.39 8.32 -40.82 -0.34 7.05 16 37 H 0.12 2.03 8.03 -51.93 -0.42 1.62 16 38 H 0.11 1.86 4.64 -51.93 -0.24 1.62 16 39 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 40 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 41 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 42 H 0.14 2.99 7.97 -52.49 -0.42 2.57 16 LS Contribution 359.33 15.07 5.42 5.42 Total: -1.00 -35.09 359.33 -6.73 -41.82 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.05 Total: 4.15 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -1.83 Total: 1.72 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.35 Total: -34.18 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.59 Total: -35.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.09 -6.73 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353259503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.294 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds