Wall clock time and date at job start Tue Mar 31 2020 16:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.46990 * 2 1 4 4 C 1.38681 * 119.89797 * 269.97551 * 3 2 1 5 5 C 1.37854 * 120.65356 * 180.02562 * 4 3 2 6 6 C 1.38965 * 119.97379 * 0.04342 * 5 4 3 7 7 O 1.34910 * 133.10131 * 179.97438 * 6 5 4 8 8 C 1.33824 * 111.35711 * 179.74044 * 7 6 5 9 9 C 1.36147 * 109.82991 * 0.40074 * 8 7 6 10 10 C 1.46987 * 127.14554 * 179.88614 * 9 8 7 11 11 O 1.21682 * 120.00159 * 154.24871 * 10 9 8 12 12 N 1.34786 * 120.00320 * 334.24409 * 10 9 8 13 13 C 1.36948 * 120.00271 * 187.62933 * 12 10 9 14 14 H 1.07994 * 120.00339 * 218.58178 * 13 12 10 15 15 C 1.38984 * 119.99663 * 38.57958 * 13 12 10 16 16 N 1.31406 * 120.00135 * 6.91355 * 15 13 12 17 17 Si 1.86807 * 119.99570 * 186.91068 * 15 13 12 18 18 H 1.48505 * 109.46779 * 90.00181 * 17 15 13 19 19 H 1.48494 * 109.47050 * 210.00083 * 17 15 13 20 20 H 1.48495 * 109.46977 * 330.00035 * 17 15 13 21 21 C 1.46502 * 119.99489 * 7.63332 * 12 10 9 22 22 C 1.50692 * 109.47383 * 88.62117 * 21 12 10 23 23 O 1.20829 * 119.99813 * 359.97438 * 22 21 12 24 24 O 1.34227 * 120.00504 * 179.97438 * 22 21 12 25 25 C 1.45192 * 117.00419 * 179.97438 * 24 22 21 26 26 C 1.40230 * 119.25500 * 359.96441 * 6 5 4 27 27 C 1.37854 * 119.90277 * 90.00271 * 3 2 1 28 28 H 1.09007 * 109.46924 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47131 * 299.99934 * 1 2 3 30 30 H 1.08993 * 109.47101 * 60.00137 * 1 2 3 31 31 H 1.09000 * 109.47131 * 240.00066 * 2 1 3 32 32 H 1.08998 * 109.47401 * 120.00228 * 2 1 3 33 33 H 1.07994 * 119.67956 * 0.02777 * 4 3 2 34 34 H 1.07994 * 120.01333 * 180.02562 * 5 4 3 35 35 H 1.08006 * 125.08819 * 180.24501 * 8 7 6 36 36 H 0.97007 * 119.99758 * 184.76792 * 16 15 13 37 37 H 1.09001 * 109.46522 * 208.62177 * 21 12 10 38 38 H 1.09001 * 109.47044 * 328.61307 * 21 12 10 39 39 H 1.08999 * 109.47271 * 60.00095 * 25 24 22 40 40 H 1.09008 * 109.46976 * 179.97438 * 25 24 22 41 41 H 1.08998 * 109.47513 * 299.99740 * 25 24 22 42 42 H 1.07999 * 120.17734 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2632 2.0723 -1.2022 5 6 2.7231 3.3718 -1.2204 6 6 2.9607 4.0409 -0.0259 7 8 3.4010 5.2830 0.2632 8 6 3.4659 5.4817 1.5850 9 6 3.0722 4.3557 2.2412 10 6 3.0003 4.1552 3.6956 11 8 2.2292 3.3363 4.1595 12 7 3.7887 4.8785 4.5154 13 6 3.8375 4.5860 5.8524 14 1 3.8952 5.3838 6.5779 15 6 3.8127 3.2623 6.2754 16 7 3.8797 2.2896 5.3945 17 14 3.6843 2.8662 8.0965 18 1 2.2537 2.7554 8.4792 19 1 4.3717 1.5792 8.3728 20 1 4.3253 3.9490 8.8850 21 6 4.5933 5.9776 3.9761 22 6 3.7847 7.2490 3.9962 23 8 2.6523 7.2381 4.4173 24 8 4.3224 8.3936 3.5463 25 6 3.4855 9.5791 3.5951 26 6 2.7265 3.3797 1.1883 27 6 2.2614 2.0687 1.1950 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0808 1.5568 -2.1335 34 1 2.8990 3.8694 -2.1626 35 1 3.7853 6.3975 2.0602 36 1 3.7929 1.3674 5.6827 37 1 5.4877 6.1061 4.5857 38 1 4.8826 5.7470 2.9508 39 1 3.1961 9.7773 4.6271 40 1 4.0402 10.4318 3.2035 41 1 2.5921 9.4183 2.9917 42 1 2.0815 1.5609 2.1311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353259503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:47 Heat of formation + Delta-G solvation = -76.870562 kcal Electronic energy + Delta-G solvation = -28966.620646 eV Core-core repulsion = 24879.163761 eV Total energy + Delta-G solvation = -4087.456886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.59941 -41.69296 -39.95672 -39.37706 -37.55050 -36.08887 -34.65610 -34.49250 -33.29427 -30.77630 -30.25687 -29.81589 -27.83730 -26.94978 -25.14173 -23.92693 -23.82568 -22.35075 -22.03611 -20.94823 -19.14660 -18.83341 -18.59270 -18.39993 -17.38494 -17.23793 -17.13146 -17.08646 -16.39568 -16.10696 -15.77265 -15.49498 -15.19990 -14.94154 -14.53789 -14.41555 -14.31571 -14.13165 -14.07339 -13.67352 -13.41931 -13.39202 -12.98680 -12.93603 -12.85061 -12.76837 -12.52932 -12.24755 -12.07500 -11.92983 -11.81052 -11.78045 -11.68967 -11.08776 -11.03013 -10.30787 -9.48132 -9.35808 -9.20257 -8.18954 -6.10490 -0.20619 0.29759 0.88868 1.01662 1.36687 1.43686 1.49676 1.57648 1.68063 2.25824 2.58965 2.76815 3.00217 3.19843 3.35648 3.62847 3.81486 3.85241 3.95969 3.99209 4.11099 4.27339 4.31024 4.33807 4.34565 4.38675 4.45456 4.51729 4.53388 4.71709 4.75182 4.84527 5.01592 5.08757 5.16797 5.23289 5.25706 5.35987 5.37242 5.40743 5.60657 5.66891 6.04539 6.09141 6.68029 6.85156 7.04951 7.44830 8.19000 8.81800 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.005344 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.935864 B = 5238.614446 C = 7735.064365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.095 4.095 4 C -0.081 4.081 5 C -0.096 4.096 6 C 0.028 3.972 7 O -0.180 6.180 8 C 0.024 3.976 9 C -0.221 4.221 10 C 0.527 3.473 11 O -0.555 6.555 12 N -0.447 5.447 13 C -0.347 4.347 14 H 0.086 0.914 15 C -0.001 4.001 16 N -0.851 5.851 17 Si 0.983 3.017 18 H -0.292 1.292 19 H -0.278 1.278 20 H -0.249 1.249 21 C 0.090 3.910 22 C 0.435 3.565 23 O -0.523 6.523 24 O -0.354 6.354 25 C 0.025 3.975 26 C -0.124 4.124 27 C -0.085 4.085 28 H 0.076 0.924 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.056 0.944 33 H 0.183 0.817 34 H 0.173 0.827 35 H 0.227 0.773 36 H 0.260 0.740 37 H 0.143 0.857 38 H 0.131 0.869 39 H 0.056 0.944 40 H 0.143 0.857 41 H 0.059 0.941 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 5.294 -15.304 16.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.095 4.095 4 C -0.098 4.098 5 C -0.114 4.114 6 C -0.018 4.018 7 O -0.080 6.080 8 C -0.043 4.043 9 C -0.226 4.226 10 C 0.317 3.683 11 O -0.435 6.435 12 N -0.168 5.168 13 C -0.474 4.474 14 H 0.104 0.896 15 C -0.207 4.207 16 N -0.487 5.487 17 Si 0.807 3.193 18 H -0.219 1.219 19 H -0.203 1.203 20 H -0.173 1.173 21 C -0.036 4.036 22 C 0.277 3.723 23 O -0.411 6.411 24 O -0.270 6.270 25 C -0.068 4.068 26 C -0.126 4.126 27 C -0.103 4.103 28 H 0.094 0.906 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.075 0.925 33 H 0.200 0.800 34 H 0.191 0.809 35 H 0.242 0.758 36 H 0.069 0.931 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.075 0.925 40 H 0.161 0.839 41 H 0.078 0.922 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.257 4.892 -15.149 15.969 hybrid contribution -0.498 -0.110 2.002 2.066 sum 0.759 4.781 -13.147 14.010 Atomic orbital electron populations 1.21743 0.94157 1.02595 1.01637 1.20565 0.96620 0.90686 1.03765 1.20133 0.99738 0.97860 0.91787 1.21272 0.97178 0.92874 0.98474 1.20395 1.02157 0.94517 0.94311 1.20057 1.02470 0.83522 0.95781 1.83789 1.70037 1.30331 1.23847 1.24943 1.00207 0.99215 0.79935 1.21626 1.09810 0.96335 0.94807 1.17250 0.82167 0.84701 0.84185 1.90550 1.38722 1.37104 1.77078 1.43012 1.37874 1.28200 1.07670 1.19389 1.53963 0.92450 0.81587 0.89638 1.26167 0.95953 0.95447 1.03162 1.70103 1.42886 0.99639 1.36038 0.85098 0.77546 0.78347 0.78267 1.21879 1.20286 1.17261 1.21796 0.94683 0.82529 1.04595 1.24997 0.86661 0.86703 0.73982 1.90705 1.20995 1.86430 1.42953 1.86524 1.46695 1.17839 1.75952 1.23605 0.95889 0.84485 1.02843 1.19771 1.04653 0.96082 0.92069 1.20489 0.98572 0.92621 0.98637 0.90551 0.95279 0.91078 0.87466 0.92533 0.79963 0.80948 0.75750 0.93104 0.83944 0.85233 0.92508 0.83909 0.92237 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.89 71.98 0.71 -2.43 16 2 C -0.08 -1.87 6.06 29.85 0.18 -1.69 16 3 C -0.09 -2.85 5.13 -19.85 -0.10 -2.95 16 4 C -0.08 -1.83 9.67 22.28 0.22 -1.61 16 5 C -0.10 -2.39 10.06 22.35 0.22 -2.17 16 6 C 0.03 0.98 7.39 22.93 0.17 1.15 16 7 O -0.18 -6.16 10.53 -4.00 -0.04 -6.21 16 8 C 0.02 0.91 9.66 67.33 0.65 1.56 16 9 C -0.22 -10.57 5.94 -18.98 -0.11 -10.68 16 10 C 0.53 30.23 6.68 86.53 0.58 30.81 16 11 O -0.56 -37.03 14.17 -4.29 -0.06 -37.09 16 12 N -0.45 -23.65 2.06 -643.77 -1.33 -24.98 16 13 C -0.35 -19.76 9.32 84.07 0.78 -18.98 16 14 H 0.09 4.67 7.84 -2.91 -0.02 4.65 16 15 C 0.00 -0.05 4.76 84.94 0.40 0.36 16 16 N -0.85 -52.88 10.58 21.67 0.23 -52.65 16 17 Si 0.98 46.11 29.56 68.60 2.03 48.14 16 18 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 20 H -0.25 -10.61 7.11 99.48 0.71 -9.91 16 21 C 0.09 3.47 5.50 85.63 0.47 3.94 16 22 C 0.44 16.02 5.92 71.23 0.42 16.44 16 23 O -0.52 -23.94 16.17 21.95 0.35 -23.59 16 24 O -0.35 -9.78 10.55 -51.39 -0.54 -10.33 16 25 C 0.02 0.52 10.56 113.37 1.20 1.72 16 26 C -0.12 -5.47 6.33 -20.09 -0.13 -5.60 16 27 C -0.08 -3.57 9.73 22.39 0.22 -3.35 16 28 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.11 1.75 8.08 -2.39 -0.02 1.73 16 32 H 0.06 1.52 8.08 -2.39 -0.02 1.50 16 33 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.23 7.32 3.87 -2.91 -0.01 7.31 16 36 H 0.26 15.59 8.32 -92.70 -0.77 14.82 16 37 H 0.14 4.79 8.03 -2.39 -0.02 4.77 16 38 H 0.13 4.40 4.64 -2.39 -0.01 4.39 16 39 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 40 H 0.14 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 42 H 0.09 4.62 7.97 -2.91 -0.02 4.59 16 Total: -1.00 -86.56 359.33 7.59 -78.97 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 1.06 Total: 21.20 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 5.88 Total: 6.53 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -1.10 Total: -77.63 kcal Atomic # 8 Polarization: -76.92 SS G_CDS: -0.29 Total: -77.21 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -86.56 7.59 -78.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353259503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.099 kcal (2) G-P(sol) polarization free energy of solvation -86.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds