Wall clock time and date at job start Tue Mar 31 2020 17:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00119 * 2 1 4 4 C 1.53000 * 109.47236 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47183 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47442 * 305.00270 * 5 4 3 7 7 C 1.53000 * 109.47321 * 184.99934 * 5 4 3 8 8 S 1.81403 * 109.47074 * 65.00224 * 5 4 3 9 9 O 1.42102 * 110.54099 * 68.37115 * 8 5 4 10 10 O 1.42102 * 110.54241 * 291.62685 * 8 5 4 11 11 N 1.65588 * 104.45287 * 180.02562 * 8 5 4 12 12 C 1.46505 * 119.99925 * 269.99800 * 11 8 5 13 13 C 1.50695 * 109.47160 * 264.99690 * 12 11 8 14 14 H 1.07994 * 120.00534 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99930 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99831 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00106 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47518 * 89.99715 * 17 15 13 19 19 H 1.48501 * 109.47126 * 210.00158 * 17 15 13 20 20 H 1.48505 * 109.47186 * 330.00142 * 17 15 13 21 21 C 1.46501 * 120.00248 * 89.99962 * 11 8 5 22 22 C 1.50693 * 109.47423 * 95.00139 * 21 11 8 23 23 C 1.34512 * 125.79339 * 89.99938 * 22 21 11 24 24 C 1.41376 * 106.84688 * 179.79418 * 23 22 21 25 25 C 1.34517 * 106.83881 * 0.37683 * 24 23 22 26 26 O 1.34305 * 125.78769 * 270.03097 * 22 21 11 27 27 H 1.09005 * 109.46921 * 60.00209 * 1 2 3 28 28 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47339 * 300.00099 * 1 2 3 30 30 H 1.09002 * 109.47191 * 59.99970 * 3 2 1 31 31 H 1.09000 * 109.47403 * 299.99954 * 3 2 1 32 32 H 1.09003 * 109.47562 * 60.00368 * 4 3 2 33 33 H 1.09000 * 109.47678 * 299.99986 * 4 3 2 34 34 H 1.08997 * 109.46811 * 60.00194 * 7 5 4 35 35 H 1.08995 * 109.47137 * 180.02562 * 7 5 4 36 36 H 1.09006 * 109.47161 * 300.00589 * 7 5 4 37 37 H 1.09001 * 109.47243 * 25.00297 * 12 11 8 38 38 H 1.08999 * 109.46930 * 144.99696 * 12 11 8 39 39 H 0.97008 * 120.00000 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.46893 * 334.99828 * 21 11 8 41 41 H 1.09004 * 109.47276 * 215.00523 * 21 11 8 42 42 H 1.08006 * 126.57600 * 0.02562 * 23 22 21 43 43 H 1.07998 * 126.58562 * 180.23597 * 24 23 22 44 44 H 1.08002 * 125.79423 * 179.89440 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5823 0.0000 6 1 3.7674 3.1535 -0.8422 7 6 5.6780 2.4637 -0.1251 8 16 3.7429 3.4297 1.5494 9 8 4.4016 2.8126 2.6470 10 8 2.3536 3.7240 1.6002 11 7 4.4692 4.9119 1.4172 12 6 5.8410 5.1006 1.8954 13 6 5.8129 5.6404 3.3021 14 1 4.8677 5.8241 3.7912 15 6 6.9939 5.8988 3.9651 16 7 8.1449 5.6746 3.3697 17 14 6.9590 6.5672 5.7090 18 1 6.9543 5.4371 6.6723 19 1 8.1597 7.4098 5.9403 20 1 5.7351 7.3861 5.9009 21 6 3.7400 6.0345 0.8220 22 6 3.0939 6.8489 1.9130 23 6 3.6528 7.8926 2.5515 24 6 2.7007 8.3580 3.4873 25 6 1.6200 7.5656 3.3706 26 8 1.8627 6.6552 2.4133 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8575 0.6435 -0.8891 33 1 3.8568 0.6438 0.8908 34 1 5.9273 1.9546 -1.0560 35 1 6.1214 3.4594 -0.1251 36 1 6.0684 1.8925 0.7172 37 1 6.3648 4.1448 1.8833 38 1 6.3584 5.8065 1.2456 39 1 8.9758 5.8568 3.8360 40 1 2.9714 5.6530 0.1498 41 1 4.4333 6.6622 0.2621 42 1 4.6383 8.2996 2.3794 43 1 2.8192 9.1887 4.1671 44 1 0.7098 7.6499 3.9457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361730994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:45 Heat of formation + Delta-G solvation = -97.734847 kcal Electronic energy + Delta-G solvation = -28247.252869 eV Core-core repulsion = 24294.335191 eV Total energy + Delta-G solvation = -3952.917678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.86903 -38.17197 -36.61040 -36.04767 -35.33961 -35.14735 -32.55240 -32.27297 -30.06915 -29.49752 -27.23222 -26.48435 -24.75011 -23.54142 -22.46725 -21.79864 -21.07071 -20.00087 -18.26767 -17.40965 -16.94013 -16.72577 -16.40943 -16.17461 -15.64179 -15.59600 -15.23545 -15.05295 -14.47124 -14.15236 -13.82900 -13.41670 -13.31047 -13.00784 -12.75613 -12.67185 -12.37831 -12.15907 -12.09739 -11.98371 -11.72268 -11.61895 -11.47183 -11.43657 -11.20357 -11.13694 -11.07096 -11.03994 -10.72181 -10.54357 -10.07137 -10.02356 -9.76507 -9.65922 -9.18158 -8.41617 -8.27205 -7.78792 -6.03100 -4.03418 0.70702 2.32050 3.13826 3.35090 3.41432 3.42715 3.47332 3.55952 3.61871 4.34916 4.44773 4.49548 4.69777 4.87633 4.90002 5.13465 5.18662 5.25922 5.27523 5.32481 5.34137 5.34603 5.40737 5.53812 5.65180 5.69642 5.73731 5.80615 5.85290 5.88561 5.94523 6.18947 6.26716 6.42046 6.62457 6.69669 6.99835 7.08280 7.16528 7.32506 7.49122 7.81114 7.96505 8.23505 8.99860 9.60846 11.05993 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012708 B = 0.004962 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.833308 B = 5641.237606 C = 6908.228629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.390 6.390 3 C 0.032 3.968 4 C -0.103 4.103 5 C -0.601 4.601 6 H 0.130 0.870 7 C -0.136 4.136 8 S 2.599 3.401 9 O -0.929 6.929 10 O -0.962 6.962 11 N -0.981 5.981 12 C 0.252 3.748 13 C -0.513 4.513 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.900 5.900 17 Si 0.889 3.111 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.216 3.784 22 C -0.025 4.025 23 C -0.169 4.169 24 C -0.218 4.218 25 C -0.057 4.057 26 O -0.165 6.165 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.818 -2.820 -9.985 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.309 6.309 3 C -0.045 4.045 4 C -0.142 4.142 5 C -0.708 4.708 6 H 0.148 0.852 7 C -0.194 4.194 8 S 2.689 3.311 9 O -0.919 6.919 10 O -0.952 6.952 11 N -0.819 5.819 12 C 0.131 3.869 13 C -0.552 4.552 14 H 0.081 0.919 15 C -0.138 4.138 16 N -0.539 5.539 17 Si 0.717 3.283 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.196 1.196 21 C 0.090 3.910 22 C -0.077 4.077 23 C -0.189 4.189 24 C -0.237 4.237 25 C -0.125 4.125 26 O -0.061 6.061 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.124 0.876 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.175 -3.534 -9.370 15.006 hybrid contribution 0.293 0.847 0.669 1.118 sum -10.882 -2.687 -8.702 14.190 Atomic orbital electron populations 1.22774 0.80806 1.02657 1.00452 1.87815 1.19969 1.27582 1.95576 1.23038 0.93597 0.85351 1.02485 1.21280 0.93048 0.94142 1.05726 1.30563 1.06406 1.08408 1.25451 0.85167 1.21603 0.89214 1.04557 1.04007 1.05638 0.74156 0.74541 0.76761 1.93631 1.75487 1.76522 1.46304 1.93544 1.31706 1.83252 1.86709 1.57673 1.27370 1.21863 1.74955 1.19239 0.74294 0.98287 0.95125 1.21460 0.92873 1.42192 0.98686 0.91867 1.24851 0.95322 0.95763 0.97907 1.69906 0.97243 1.49252 1.37538 0.86620 0.77458 0.79040 0.85194 1.20618 1.21335 1.19633 1.19382 0.93878 0.88085 0.89704 1.22811 0.83977 0.99008 1.01873 1.21547 1.00457 0.98612 0.98264 1.21779 0.94846 1.03576 1.03546 1.23856 1.01313 0.92108 0.95237 1.84081 1.31740 1.47518 1.42731 0.94002 0.89579 0.93584 0.91114 0.92347 0.88980 0.89669 0.91089 0.90040 0.90547 0.93808 0.94493 0.92866 0.90164 0.87601 0.83323 0.84311 0.79064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -5.29 10.70 -35.23 -0.38 -5.67 16 3 C 0.03 0.43 5.63 37.16 0.21 0.64 16 4 C -0.10 -1.35 5.05 -26.73 -0.14 -1.49 16 5 C -0.60 -8.18 3.03 -26.73 -0.08 -8.26 16 6 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 7 C -0.14 -1.82 8.45 37.16 0.31 -1.51 16 8 S 2.60 49.15 4.40 -107.50 -0.47 48.67 16 9 O -0.93 -21.76 16.87 -57.54 -0.97 -22.73 16 10 O -0.96 -19.01 14.73 -57.54 -0.85 -19.86 16 11 N -0.98 -19.04 2.49 -116.95 -0.29 -19.33 16 12 C 0.25 5.84 4.07 -5.19 -0.02 5.82 16 13 C -0.51 -13.82 8.29 -34.44 -0.29 -14.11 16 14 H 0.06 1.79 6.83 -52.49 -0.36 1.43 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.90 -25.43 13.29 55.43 0.74 -24.69 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.22 3.59 5.81 -5.20 -0.03 3.56 16 22 C -0.02 -0.47 6.21 -35.63 -0.22 -0.69 16 23 C -0.17 -3.22 9.43 -39.71 -0.37 -3.59 16 24 C -0.22 -3.80 10.91 -39.70 -0.43 -4.24 16 25 C -0.06 -0.95 12.09 29.42 0.36 -0.59 16 26 O -0.17 -3.21 10.65 5.68 0.06 -3.15 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.07 5.61 -51.93 -0.29 0.78 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.12 6.53 -51.93 -0.34 0.78 16 36 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 37 H 0.04 1.07 6.54 -51.93 -0.34 0.73 16 38 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.08 1.09 7.61 -51.93 -0.39 0.70 16 41 H 0.11 1.48 8.00 -51.93 -0.42 1.06 16 42 H 0.15 2.83 8.06 -52.48 -0.42 2.41 16 43 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 44 H 0.19 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -34.45 374.28 -7.99 -42.44 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.76 Total: 3.20 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 0.31 Total: -21.41 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.45 Total: -44.02 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -2.14 Total: -51.41 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 49.15 SS G_CDS: -0.47 Total: 48.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.45 -7.99 -42.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361730994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.296 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds