Wall clock time and date at job start Tue Mar 31 2020 16:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47796 * 2 1 4 4 H 1.08999 * 109.46444 * 54.88728 * 3 2 1 5 5 C 1.52994 * 109.47308 * 174.88901 * 3 2 1 6 6 S 1.81402 * 109.46823 * 184.99771 * 5 3 2 7 7 O 1.42102 * 110.53974 * 68.37983 * 6 5 3 8 8 O 1.42097 * 110.54419 * 291.62642 * 6 5 3 9 9 N 1.65603 * 104.44827 * 180.02562 * 6 5 3 10 10 C 1.46494 * 119.99879 * 90.00230 * 9 6 5 11 11 C 1.50708 * 109.47051 * 94.99947 * 10 9 6 12 12 H 1.07996 * 120.00087 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99704 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00252 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99692 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.46981 * 60.00124 * 15 13 11 17 17 H 1.48498 * 109.46841 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46939 * 300.00031 * 15 13 11 19 19 C 1.46495 * 120.00202 * 270.00053 * 9 6 5 20 20 C 1.50701 * 109.47701 * 265.00355 * 19 9 6 21 21 C 1.34513 * 125.79192 * 89.70814 * 20 19 9 22 22 C 1.41380 * 106.83998 * 179.89554 * 21 20 19 23 23 C 1.34513 * 106.84091 * 0.37474 * 22 21 20 24 24 O 1.34300 * 125.78569 * 270.02955 * 20 19 9 25 25 O 1.42899 * 109.46577 * 294.89464 * 3 2 1 26 26 C 1.42903 * 114.00411 * 100.61961 * 25 3 2 27 27 H 1.09001 * 109.46839 * 65.96320 * 1 2 3 28 28 H 1.08997 * 109.47410 * 185.96746 * 1 2 3 29 29 H 1.08999 * 109.46602 * 305.96740 * 1 2 3 30 30 H 1.08998 * 109.47429 * 239.99558 * 2 1 3 31 31 H 1.09005 * 109.46908 * 120.00143 * 2 1 3 32 32 H 1.09004 * 109.47034 * 65.00371 * 5 3 2 33 33 H 1.09002 * 109.47285 * 304.99956 * 5 3 2 34 34 H 1.08996 * 109.47657 * 215.00025 * 10 9 6 35 35 H 1.09001 * 109.47373 * 334.99867 * 10 9 6 36 36 H 0.97002 * 119.99894 * 180.02562 * 14 13 11 37 37 H 1.09006 * 109.47390 * 25.00254 * 19 9 6 38 38 H 1.09002 * 109.47224 * 144.99566 * 19 9 6 39 39 H 1.08000 * 126.57881 * 0.03514 * 21 20 19 40 40 H 1.07996 * 126.57814 * 180.16867 * 22 21 20 41 41 H 1.07996 * 125.78825 * 179.75024 * 23 22 21 42 42 H 1.08998 * 109.47150 * 294.54965 * 26 25 3 43 43 H 1.09004 * 109.47166 * 54.54271 * 26 25 3 44 44 H 1.08994 * 109.47527 * 174.54411 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6040 1.9820 0.8407 5 6 3.5647 1.4442 0.1285 6 16 4.1569 3.1524 0.2771 7 8 3.7544 3.7134 1.5191 8 8 3.9616 3.8557 -0.9421 9 7 5.8017 3.0097 0.4066 10 6 6.6349 3.0198 -0.7982 11 6 7.1369 4.4182 -1.0501 12 1 6.8624 5.2194 -0.3800 13 6 7.9467 4.6748 -2.1362 14 7 8.2807 3.6992 -2.9525 15 14 8.5696 6.4081 -2.4480 16 1 9.3744 6.8615 -1.2854 17 1 9.4141 6.4182 -3.6694 18 1 7.4149 7.3223 -2.6376 19 6 6.4234 2.8734 1.7261 20 6 6.8633 4.2288 2.2167 21 6 6.1184 5.0829 2.9413 22 6 6.9196 6.2228 3.1815 23 6 8.1032 6.0005 2.5822 24 8 8.0633 4.7912 1.9994 25 8 1.6642 2.0805 -1.2221 26 6 0.5215 2.9307 -1.1065 27 1 -0.3633 0.4186 -0.9386 28 1 -0.3634 -1.0220 0.1068 29 1 -0.3632 0.6036 0.8318 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 4.0044 0.9829 -0.7558 33 1 3.8553 0.8805 1.0150 34 1 7.4827 2.3489 -0.6594 35 1 6.0440 2.6866 -1.6514 36 1 8.8507 3.8796 -3.7164 37 1 5.7025 2.4503 2.4256 38 1 7.2889 2.2148 1.6536 39 1 5.1040 4.9268 3.2772 40 1 6.6347 7.1043 3.7365 41 1 8.9429 6.6796 2.5713 42 1 -0.3558 2.3298 -0.8671 43 1 0.6897 3.6597 -0.3137 44 1 0.3589 3.4513 -2.0501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420645431.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:20 Heat of formation + Delta-G solvation = -95.251302 kcal Electronic energy + Delta-G solvation = -28124.028130 eV Core-core repulsion = 24171.218147 eV Total energy + Delta-G solvation = -3952.809983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.84016 -38.74165 -36.51206 -35.90731 -35.18129 -33.76730 -32.60145 -32.18095 -30.67703 -29.85364 -27.08585 -26.62225 -24.87202 -24.05343 -22.37531 -21.36030 -21.03827 -19.98877 -18.23925 -17.34328 -17.06763 -16.77441 -16.47168 -15.92635 -15.67218 -15.36554 -15.04874 -14.63362 -14.44626 -14.17768 -14.01158 -13.56775 -13.30268 -12.87480 -12.80460 -12.50587 -12.37691 -12.20179 -12.13351 -12.09818 -11.81567 -11.51615 -11.46928 -11.38471 -11.36724 -11.20667 -11.01848 -10.87428 -10.65029 -10.51974 -10.35396 -9.94825 -9.76864 -9.53843 -9.25370 -8.35908 -8.23093 -7.81284 -5.96927 -3.97216 0.75810 2.35928 3.13366 3.39884 3.42457 3.44129 3.49185 3.58419 3.68074 4.30500 4.52622 4.56712 4.66473 4.69113 4.84199 5.07921 5.17755 5.20748 5.29606 5.31136 5.31750 5.36643 5.40779 5.52687 5.61506 5.68836 5.73203 5.74618 5.80095 5.85976 5.90832 6.06758 6.20917 6.38191 6.57244 6.71336 7.05115 7.13863 7.16302 7.37477 7.54775 7.84952 8.01437 8.28846 9.03797 9.66350 11.12587 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.004792 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.306122 B = 5841.161675 C = 7062.324898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.134 4.134 3 C 0.100 3.900 4 H 0.073 0.927 5 C -0.650 4.650 6 S 2.602 3.398 7 O -0.971 6.971 8 O -0.918 6.918 9 N -0.983 5.983 10 C 0.254 3.746 11 C -0.509 4.509 12 H 0.059 0.941 13 C 0.063 3.937 14 N -0.900 5.900 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.211 3.789 20 C -0.008 4.008 21 C -0.205 4.205 22 C -0.226 4.226 23 C -0.044 4.044 24 O -0.151 6.151 25 O -0.373 6.373 26 C 0.021 3.979 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.037 0.963 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.151 0.849 40 H 0.139 0.861 41 H 0.193 0.807 42 H 0.047 0.953 43 H 0.043 0.957 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 -6.594 10.416 16.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.172 4.172 3 C 0.041 3.959 4 H 0.091 0.909 5 C -0.776 4.776 6 S 2.693 3.307 7 O -0.961 6.961 8 O -0.908 6.908 9 N -0.821 5.821 10 C 0.132 3.868 11 C -0.549 4.549 12 H 0.078 0.922 13 C -0.139 4.139 14 N -0.540 5.540 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.084 3.916 20 C -0.061 4.061 21 C -0.226 4.226 22 C -0.245 4.245 23 C -0.113 4.113 24 O -0.045 6.045 25 O -0.291 6.291 26 C -0.076 4.076 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.169 0.831 40 H 0.157 0.843 41 H 0.209 0.791 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.851 -6.050 9.872 15.868 hybrid contribution 0.343 0.623 -0.030 0.711 sum -10.508 -5.427 9.842 15.386 Atomic orbital electron populations 1.21886 0.95544 1.01967 1.02121 1.21945 0.96325 0.95621 1.03340 1.21750 0.90842 0.95308 0.88034 0.90939 1.31054 1.04538 1.30148 1.11879 1.05344 0.73742 0.76965 0.74631 1.93519 1.82545 1.74828 1.45232 1.93648 1.83935 1.67433 1.45741 1.57749 1.23763 1.88185 1.12359 1.19173 0.90105 0.98243 0.79243 1.21322 1.29267 0.94256 1.10006 0.92247 1.24850 0.96232 0.97051 0.95734 1.69900 1.37166 1.31554 1.15415 0.86643 0.78795 0.85172 0.77398 1.20245 1.21315 1.20175 1.19397 0.98697 0.89576 0.83902 1.22801 0.84411 0.98398 1.00451 1.21694 1.01298 0.94590 1.04988 1.21720 0.94924 1.00804 1.07061 1.23898 1.00629 0.87356 0.99466 1.84120 1.33849 1.27425 1.59069 1.88072 1.47805 1.62256 1.31011 1.23049 0.87847 0.93282 1.03395 0.91950 0.92322 0.92761 0.90436 0.90726 0.83979 0.84590 0.94512 0.94031 0.92838 0.88626 0.89053 0.83141 0.84318 0.79061 0.93435 0.93790 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.84 37.16 0.33 -1.03 16 2 C -0.13 -1.35 5.64 -26.73 -0.15 -1.50 16 3 C 0.10 1.29 2.27 -26.73 -0.06 1.23 16 4 H 0.07 0.85 7.61 -51.93 -0.40 0.45 16 5 C -0.65 -8.88 5.87 37.15 0.22 -8.66 16 6 S 2.60 49.35 5.17 -107.50 -0.56 48.79 16 7 O -0.97 -18.62 15.76 -57.54 -0.91 -19.53 16 8 O -0.92 -21.86 16.51 -59.91 -0.99 -22.85 16 9 N -0.98 -19.79 2.72 -116.95 -0.32 -20.11 16 10 C 0.25 6.27 5.03 -5.19 -0.03 6.25 16 11 C -0.51 -14.44 8.89 -34.44 -0.31 -14.75 16 12 H 0.06 1.75 7.27 -52.49 -0.38 1.37 16 13 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 14 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 15 Si 0.89 22.63 29.54 -169.99 -5.02 17.61 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 19 C 0.21 3.62 5.81 -5.20 -0.03 3.59 16 20 C -0.01 -0.15 6.00 -35.62 -0.21 -0.36 16 21 C -0.21 -3.86 10.29 -39.70 -0.41 -4.27 16 22 C -0.23 -3.90 10.91 -39.70 -0.43 -4.33 16 23 C -0.04 -0.78 12.09 29.42 0.36 -0.43 16 24 O -0.15 -3.13 10.51 5.72 0.06 -3.07 16 25 O -0.37 -5.64 9.47 -36.21 -0.34 -5.99 16 26 C 0.02 0.25 10.48 101.05 1.06 1.31 16 27 H 0.06 0.56 6.58 -51.93 -0.34 0.21 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.14 1.94 8.14 -51.92 -0.42 1.52 16 33 H 0.14 1.36 8.14 -51.92 -0.42 0.93 16 34 H 0.04 0.91 8.00 -51.93 -0.42 0.50 16 35 H 0.04 1.09 7.61 -51.93 -0.39 0.69 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.10 1.26 7.61 -51.93 -0.40 0.87 16 38 H 0.09 1.41 8.00 -51.93 -0.42 0.99 16 39 H 0.15 2.71 7.36 -52.49 -0.39 2.33 16 40 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 41 H 0.19 2.65 8.06 -52.49 -0.42 2.23 16 42 H 0.05 0.44 5.97 -51.93 -0.31 0.13 16 43 H 0.04 0.52 7.99 -51.93 -0.42 0.11 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -36.03 377.29 -8.21 -44.24 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.79 Total: 2.32 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 0.23 Total: -21.24 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.42 Total: -45.98 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -2.18 Total: -51.43 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 16 Polarization: 49.35 SS G_CDS: -0.56 Total: 48.79 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.03 -8.21 -44.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420645431.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.013 kcal (2) G-P(sol) polarization free energy of solvation -36.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds