Wall clock time and date at job start Tue Mar 31 2020 16:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47796 * 2 1 4 4 H 1.08999 * 109.46444 * 54.88728 * 3 2 1 5 5 C 1.52994 * 109.47308 * 174.88901 * 3 2 1 6 6 S 1.81402 * 109.46823 * 184.99771 * 5 3 2 7 7 O 1.42102 * 110.53974 * 68.37983 * 6 5 3 8 8 O 1.42097 * 110.54419 * 291.62642 * 6 5 3 9 9 N 1.65603 * 104.44827 * 180.02562 * 6 5 3 10 10 C 1.46494 * 119.99879 * 90.00230 * 9 6 5 11 11 C 1.50708 * 109.47051 * 94.99947 * 10 9 6 12 12 H 1.07996 * 120.00087 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99704 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00252 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99692 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.46981 * 60.00124 * 15 13 11 17 17 H 1.48498 * 109.46841 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46939 * 300.00031 * 15 13 11 19 19 C 1.46495 * 120.00202 * 270.00053 * 9 6 5 20 20 C 1.50701 * 109.47701 * 265.00355 * 19 9 6 21 21 C 1.34513 * 125.79192 * 89.70814 * 20 19 9 22 22 C 1.41380 * 106.83998 * 179.89554 * 21 20 19 23 23 C 1.34513 * 106.84091 * 0.37474 * 22 21 20 24 24 O 1.34300 * 125.78569 * 270.02955 * 20 19 9 25 25 O 1.42899 * 109.46577 * 294.89464 * 3 2 1 26 26 C 1.42903 * 114.00411 * 100.61961 * 25 3 2 27 27 H 1.09001 * 109.46839 * 65.96320 * 1 2 3 28 28 H 1.08997 * 109.47410 * 185.96746 * 1 2 3 29 29 H 1.08999 * 109.46602 * 305.96740 * 1 2 3 30 30 H 1.08998 * 109.47429 * 239.99558 * 2 1 3 31 31 H 1.09005 * 109.46908 * 120.00143 * 2 1 3 32 32 H 1.09004 * 109.47034 * 65.00371 * 5 3 2 33 33 H 1.09002 * 109.47285 * 304.99956 * 5 3 2 34 34 H 1.08996 * 109.47657 * 215.00025 * 10 9 6 35 35 H 1.09001 * 109.47373 * 334.99867 * 10 9 6 36 36 H 0.97002 * 119.99894 * 180.02562 * 14 13 11 37 37 H 1.09006 * 109.47390 * 25.00254 * 19 9 6 38 38 H 1.09002 * 109.47224 * 144.99566 * 19 9 6 39 39 H 1.08000 * 126.57881 * 0.03514 * 21 20 19 40 40 H 1.07996 * 126.57814 * 180.16867 * 22 21 20 41 41 H 1.07996 * 125.78825 * 179.75024 * 23 22 21 42 42 H 1.08998 * 109.47150 * 294.54965 * 26 25 3 43 43 H 1.09004 * 109.47166 * 54.54271 * 26 25 3 44 44 H 1.08994 * 109.47527 * 174.54411 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6040 1.9820 0.8407 5 6 3.5647 1.4442 0.1285 6 16 4.1569 3.1524 0.2771 7 8 3.7544 3.7134 1.5191 8 8 3.9616 3.8557 -0.9421 9 7 5.8017 3.0097 0.4066 10 6 6.6349 3.0198 -0.7982 11 6 7.1369 4.4182 -1.0501 12 1 6.8624 5.2194 -0.3800 13 6 7.9467 4.6748 -2.1362 14 7 8.2807 3.6992 -2.9525 15 14 8.5696 6.4081 -2.4480 16 1 9.3744 6.8615 -1.2854 17 1 9.4141 6.4182 -3.6694 18 1 7.4149 7.3223 -2.6376 19 6 6.4234 2.8734 1.7261 20 6 6.8633 4.2288 2.2167 21 6 6.1184 5.0829 2.9413 22 6 6.9196 6.2228 3.1815 23 6 8.1032 6.0005 2.5822 24 8 8.0633 4.7912 1.9994 25 8 1.6642 2.0805 -1.2221 26 6 0.5215 2.9307 -1.1065 27 1 -0.3633 0.4186 -0.9386 28 1 -0.3634 -1.0220 0.1068 29 1 -0.3632 0.6036 0.8318 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 4.0044 0.9829 -0.7558 33 1 3.8553 0.8805 1.0150 34 1 7.4827 2.3489 -0.6594 35 1 6.0440 2.6866 -1.6514 36 1 8.8507 3.8796 -3.7164 37 1 5.7025 2.4503 2.4256 38 1 7.2889 2.2148 1.6536 39 1 5.1040 4.9268 3.2772 40 1 6.6347 7.1043 3.7365 41 1 8.9429 6.6796 2.5713 42 1 -0.3558 2.3298 -0.8671 43 1 0.6897 3.6597 -0.3137 44 1 0.3589 3.4513 -2.0501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420645431.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:17 Heat of formation + Delta-G solvation = -121.069247 kcal Electronic energy + Delta-G solvation = -28125.147680 eV Core-core repulsion = 24171.218147 eV Total energy + Delta-G solvation = -3953.929533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.26631 -39.73170 -38.05719 -37.53324 -36.76682 -34.67196 -34.62654 -33.68406 -31.61701 -31.38979 -28.93765 -27.62034 -26.42373 -24.99645 -24.24467 -22.46007 -22.25622 -21.41086 -19.74799 -18.79593 -18.64052 -18.08681 -18.01897 -17.36887 -17.06498 -16.66374 -16.53577 -16.33004 -15.74312 -15.58279 -15.17634 -14.79303 -14.49197 -14.17063 -14.04532 -13.91629 -13.63194 -13.56659 -13.49995 -13.37348 -13.20172 -13.01027 -12.94527 -12.93557 -12.86271 -12.44754 -12.36068 -12.32911 -12.22723 -11.97582 -11.75401 -11.70964 -11.52047 -10.68006 -10.59869 -10.53540 -9.92385 -9.25297 -8.15802 -6.21652 -0.67439 0.93111 1.34462 1.38204 1.44806 1.71944 2.00041 2.35307 2.42704 2.60518 3.01430 3.16581 3.31585 3.49704 3.77116 3.84979 3.93436 4.02349 4.17228 4.30059 4.33830 4.36603 4.38991 4.45267 4.47912 4.56655 4.71347 4.75733 4.79108 4.90367 5.02804 5.10308 5.16185 5.19803 5.20371 5.35598 5.39882 5.44159 5.70500 5.78583 5.87707 6.09793 6.17664 6.43498 6.82890 7.44074 8.92391 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.004792 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.306122 B = 5841.161675 C = 7062.324898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.130 4.130 3 C 0.086 3.914 4 H 0.085 0.915 5 C -0.619 4.619 6 S 2.593 3.407 7 O -0.980 6.980 8 O -0.981 6.981 9 N -0.988 5.988 10 C 0.269 3.731 11 C -0.517 4.517 12 H 0.041 0.959 13 C 0.014 3.986 14 N -0.926 5.926 15 Si 0.940 3.060 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.284 1.284 19 C 0.200 3.800 20 C -0.032 4.032 21 C -0.217 4.217 22 C -0.230 4.230 23 C -0.056 4.056 24 O -0.180 6.180 25 O -0.404 6.404 26 C 0.011 3.989 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.145 0.855 33 H 0.184 0.816 34 H 0.033 0.967 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.138 0.862 38 H 0.106 0.894 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.224 0.776 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.634 -7.650 12.051 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C 0.027 3.973 4 H 0.103 0.897 5 C -0.751 4.751 6 S 2.691 3.309 7 O -0.971 6.971 8 O -0.971 6.971 9 N -0.824 5.824 10 C 0.145 3.855 11 C -0.557 4.557 12 H 0.059 0.941 13 C -0.185 4.185 14 N -0.567 5.567 15 Si 0.766 3.234 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.210 1.210 19 C 0.074 3.926 20 C -0.084 4.084 21 C -0.237 4.237 22 C -0.249 4.249 23 C -0.124 4.124 24 O -0.076 6.076 25 O -0.324 6.324 26 C -0.085 4.085 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.163 0.837 33 H 0.201 0.799 34 H 0.051 0.949 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.172 0.828 40 H 0.185 0.815 41 H 0.240 0.760 42 H 0.096 0.904 43 H 0.057 0.943 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.645 -7.041 11.540 17.842 hybrid contribution 0.491 0.917 -0.462 1.138 sum -11.153 -6.125 11.078 16.871 Atomic orbital electron populations 1.21905 0.94447 1.03169 1.02127 1.21959 0.97322 0.93267 1.04311 1.22126 0.89899 0.97428 0.87871 0.89667 1.30808 1.05379 1.24483 1.14422 1.05335 0.73221 0.79058 0.73324 1.93492 1.82215 1.76642 1.44739 1.93574 1.84522 1.71104 1.47931 1.57556 1.23904 1.88849 1.12088 1.18688 0.90052 0.96084 0.80635 1.21560 1.29026 0.95517 1.09561 0.94088 1.25554 0.96751 1.00356 0.95822 1.69976 1.37888 1.33003 1.15852 0.85877 0.78254 0.81188 0.78075 1.18980 1.20051 1.20973 1.19873 1.00411 0.89126 0.83167 1.23305 0.84417 0.99606 1.01118 1.21931 1.01566 0.95213 1.05002 1.22106 0.94517 1.01316 1.06978 1.24645 1.02009 0.86892 0.98849 1.84097 1.34681 1.28760 1.60013 1.88032 1.49013 1.62874 1.32483 1.23239 0.88266 0.93579 1.03390 0.92720 0.90718 0.91867 0.90984 0.88222 0.83666 0.79856 0.94877 0.96067 0.92677 0.84483 0.87633 0.82756 0.81504 0.75962 0.90384 0.94282 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.84 71.98 0.64 -1.59 16 2 C -0.13 -2.17 5.64 30.59 0.17 -2.00 16 3 C 0.09 2.02 2.27 30.59 0.07 2.09 16 4 H 0.09 1.77 7.61 -2.39 -0.02 1.75 16 5 C -0.62 -15.42 5.87 71.98 0.42 -15.00 16 6 S 2.59 97.66 5.17 -56.49 -0.29 97.37 16 7 O -0.98 -36.84 15.76 -127.65 -2.01 -38.85 16 8 O -0.98 -48.45 16.51 -125.38 -2.07 -50.52 16 9 N -0.99 -39.71 2.72 -523.92 -1.42 -41.14 16 10 C 0.27 13.59 5.03 85.64 0.43 14.02 16 11 C -0.52 -30.05 8.89 25.60 0.23 -29.83 16 12 H 0.04 2.49 7.27 -2.91 -0.02 2.46 16 13 C 0.01 0.80 5.46 84.65 0.46 1.26 16 14 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 15 Si 0.94 46.80 29.54 68.60 2.03 48.83 16 16 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.28 -14.35 7.11 99.48 0.71 -13.65 16 19 C 0.20 6.64 5.81 85.63 0.50 7.14 16 20 C -0.03 -1.25 6.00 24.83 0.15 -1.10 16 21 C -0.22 -8.00 10.29 22.19 0.23 -7.77 16 22 C -0.23 -7.68 10.91 22.19 0.24 -7.43 16 23 C -0.06 -1.92 12.09 66.97 0.81 -1.11 16 24 O -0.18 -7.49 10.51 -2.46 -0.03 -7.52 16 25 O -0.40 -11.96 9.47 -148.05 -1.40 -13.37 16 26 C 0.01 0.26 10.48 113.37 1.19 1.45 16 27 H 0.05 0.84 6.58 -2.39 -0.02 0.83 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.15 3.69 8.14 -2.39 -0.02 3.68 16 33 H 0.18 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.03 1.68 8.00 -2.39 -0.02 1.66 16 35 H 0.02 1.16 7.61 -2.39 -0.02 1.14 16 36 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.14 3.28 7.61 -2.38 -0.02 3.26 16 38 H 0.11 3.14 8.00 -2.39 -0.02 3.12 16 39 H 0.15 5.45 7.36 -2.91 -0.02 5.43 16 40 H 0.17 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.22 5.79 8.06 -2.91 -0.02 5.77 16 42 H 0.08 1.31 5.97 -2.39 -0.01 1.30 16 43 H 0.04 0.93 7.99 -2.39 -0.02 0.91 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -81.01 377.29 1.61 -79.40 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.98 Total: 20.98 kcal Atomic # 6 Polarization: -45.41 SS G_CDS: 5.54 Total: -39.87 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -1.14 Total: -96.46 kcal Atomic # 8 Polarization: -104.74 SS G_CDS: -5.51 Total: -110.25 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Atomic # 16 Polarization: 97.66 SS G_CDS: -0.29 Total: 97.37 kcal Total: -81.01 1.61 -79.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420645431.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.666 kcal (2) G-P(sol) polarization free energy of solvation -81.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds