Wall clock time and date at job start Tue Mar 31 2020 17:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.49826 * 2 1 4 4 C 1.53042 * 109.49654 * 239.90544 * 2 1 3 5 5 C 1.53044 * 109.53718 * 178.68360 * 4 2 1 6 6 C 1.53193 * 109.31056 * 61.36438 * 5 4 2 7 7 N 1.46916 * 108.77570 * 305.36584 * 6 5 4 8 8 S 1.65606 * 120.62712 * 233.58840 * 7 6 5 9 9 O 1.42106 * 104.27407 * 208.75523 * 8 7 6 10 10 O 1.42098 * 104.27691 * 336.61127 * 8 7 6 11 11 C 1.81402 * 104.44844 * 92.68427 * 8 7 6 12 12 C 1.53009 * 109.46916 * 171.60538 * 11 8 7 13 13 C 1.50704 * 115.54603 * 40.01069 * 12 11 8 14 14 H 1.07998 * 120.00130 * 267.56839 * 13 12 11 15 15 C 1.37877 * 119.99532 * 87.57366 * 13 12 11 16 16 N 1.31522 * 119.99569 * 178.04806 * 15 13 12 17 17 Si 1.86796 * 120.00616 * 358.05355 * 15 13 12 18 18 H 1.48500 * 109.47194 * 90.53029 * 17 15 13 19 19 H 1.48493 * 109.47155 * 210.53386 * 17 15 13 20 20 H 1.48508 * 109.46811 * 330.53459 * 17 15 13 21 21 C 1.52994 * 117.50001 * 254.30231 * 12 11 8 22 22 C 1.52993 * 117.49737 * 185.67760 * 12 11 8 23 23 C 1.46924 * 118.74357 * 53.60830 * 7 6 5 24 24 H 1.08999 * 109.58303 * 66.17970 * 23 7 6 25 25 C 1.50699 * 109.59128 * 186.60243 * 23 7 6 26 26 O 1.20827 * 119.99836 * 52.42148 * 25 23 7 27 27 O 1.34230 * 120.00168 * 232.42591 * 25 23 7 28 28 H 1.08996 * 109.46930 * 299.93632 * 1 2 3 29 29 H 1.09000 * 109.46933 * 59.93480 * 1 2 3 30 30 H 1.09001 * 109.46988 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46141 * 58.66179 * 4 2 1 32 32 H 1.09001 * 109.46192 * 298.70298 * 4 2 1 33 33 H 1.08996 * 109.49912 * 301.41100 * 5 4 2 34 34 H 1.09000 * 109.49575 * 181.31604 * 5 4 2 35 35 H 1.09002 * 109.58578 * 65.15840 * 6 5 4 36 36 H 1.09005 * 109.58310 * 185.57696 * 6 5 4 37 37 H 1.08993 * 109.46946 * 291.60661 * 11 8 7 38 38 H 1.09001 * 109.46933 * 51.60964 * 11 8 7 39 39 H 0.97000 * 120.00071 * 179.97438 * 16 15 13 40 40 H 1.09003 * 117.49810 * 359.97438 * 21 12 11 41 41 H 1.09000 * 117.49980 * 145.02296 * 21 12 11 42 42 H 1.08998 * 117.49951 * 214.97827 * 22 12 11 43 43 H 1.09001 * 117.49808 * 0.02562 * 22 12 11 44 44 H 0.96702 * 116.99506 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7234 -1.2482 5 6 3.5709 -0.6953 -1.2659 6 6 4.1053 -1.4267 -0.0304 7 7 3.5046 -0.8289 1.1697 8 16 4.4588 -0.2846 2.4090 9 8 3.6474 -0.4314 3.5663 10 8 5.6695 -1.0146 2.2656 11 6 4.7259 1.4707 2.0372 12 6 5.4238 2.1424 3.2216 13 6 6.5035 1.3281 3.8867 14 1 6.2630 0.7000 4.7317 15 6 7.7983 1.3851 3.4165 16 7 8.7478 0.7044 4.0205 17 14 8.2042 2.4292 1.9216 18 1 8.5788 3.7975 2.3604 19 1 9.3387 1.8178 1.1841 20 1 7.0173 2.5023 1.0320 21 6 4.5816 3.0599 4.1102 22 6 5.6197 3.6584 3.1590 23 6 2.0413 -0.7235 1.2497 24 1 1.6053 -1.7213 1.2984 25 6 1.6576 0.0591 2.4790 26 8 2.1471 1.1452 2.6810 27 8 0.7720 -0.4503 3.3497 28 1 -0.3633 0.5128 0.8905 29 1 -0.3633 0.5149 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6581 -0.2250 -2.1389 32 1 1.6967 -1.7576 -1.2349 33 1 3.9160 0.3385 -1.2542 34 1 3.9334 -1.1902 -2.1668 35 1 3.8376 -2.4819 -0.0862 36 1 5.1896 -1.3246 0.0140 37 1 5.3495 1.5629 1.1480 38 1 3.7655 1.9546 1.8593 39 1 9.6588 0.7442 3.6895 40 1 3.5304 3.1853 3.8509 41 1 4.8082 3.0746 5.1763 42 1 6.5293 4.0670 3.5993 43 1 5.2510 4.1774 2.2742 44 1 0.5570 0.0888 4.1232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424369855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:56 Heat of formation + Delta-G solvation = -156.870113 kcal Electronic energy + Delta-G solvation = -29703.904505 eV Core-core repulsion = 25748.422530 eV Total energy + Delta-G solvation = -3955.481975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.79559 -39.37813 -38.82949 -38.07123 -36.96965 -36.86578 -34.57609 -34.35393 -33.06777 -30.11846 -28.26929 -27.67364 -26.42041 -23.90845 -23.35765 -22.45697 -21.55523 -20.89841 -19.83833 -19.27604 -18.85551 -18.50963 -17.65650 -17.22283 -17.17217 -16.66803 -16.20075 -15.80893 -15.54611 -15.44613 -15.05560 -14.90537 -14.76067 -14.45186 -14.38934 -14.23336 -13.82103 -13.35479 -13.20839 -13.05612 -13.01386 -12.90991 -12.71518 -12.64887 -12.43416 -12.28524 -12.17650 -12.07463 -11.97393 -11.88580 -11.69304 -11.59983 -11.46431 -11.21472 -10.96226 -10.72856 -10.35621 -9.99351 -8.40088 -6.57038 -0.63917 1.04838 1.27979 1.30494 1.42935 1.74778 2.08984 2.29559 2.91579 2.95147 3.10146 3.28502 3.53228 3.70007 3.85227 3.95694 4.06698 4.15067 4.15598 4.22120 4.29231 4.35519 4.49326 4.51808 4.61934 4.65476 4.71432 4.81252 4.87716 4.92552 4.95205 5.00139 5.13552 5.13690 5.20816 5.26475 5.37028 5.42658 5.50100 5.52412 5.56930 5.73927 6.11823 6.56561 6.92913 7.20314 8.76539 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.016126 B = 0.005967 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.864468 B = 4691.498022 C = 5193.266858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.077 0.923 4 C -0.103 4.103 5 C -0.137 4.137 6 C 0.106 3.894 7 N -1.000 6.000 8 S 2.621 3.379 9 O -0.993 6.993 10 O -0.987 6.987 11 C -0.563 4.563 12 C -0.021 4.021 13 C -0.539 4.539 14 H 0.025 0.975 15 C 0.039 3.961 16 N -0.931 5.931 17 Si 0.928 3.072 18 H -0.255 1.255 19 H -0.287 1.287 20 H -0.222 1.222 21 C -0.159 4.159 22 C -0.173 4.173 23 C 0.162 3.838 24 H 0.125 0.875 25 C 0.481 3.519 26 O -0.537 6.537 27 O -0.499 6.499 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.156 0.844 39 H 0.271 0.729 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.412 -0.754 -16.200 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.096 0.904 4 C -0.140 4.140 5 C -0.176 4.176 6 C -0.017 4.017 7 N -0.840 5.840 8 S 2.721 3.279 9 O -0.983 6.983 10 O -0.977 6.977 11 C -0.695 4.695 12 C -0.023 4.023 13 C -0.577 4.577 14 H 0.043 0.957 15 C -0.162 4.162 16 N -0.568 5.568 17 Si 0.750 3.250 18 H -0.179 1.179 19 H -0.214 1.214 20 H -0.144 1.144 21 C -0.196 4.196 22 C -0.212 4.212 23 C 0.055 3.945 24 H 0.143 0.857 25 C 0.325 3.675 26 O -0.428 6.428 27 O -0.311 6.311 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.141 0.859 38 H 0.174 0.826 39 H 0.080 0.920 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.129 0.871 44 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -18.699 -1.368 -15.726 24.471 hybrid contribution 0.867 0.989 0.734 1.507 sum -17.831 -0.378 -14.992 23.300 Atomic orbital electron populations 1.21864 0.92050 1.03727 1.02825 1.21616 0.97658 0.99966 0.92434 0.90443 1.21561 0.94152 1.01983 0.96289 1.22039 0.97083 1.01362 0.97137 1.21836 0.97922 0.98926 0.83028 1.57938 1.13713 1.76527 1.35849 1.04395 0.72257 0.78030 0.73180 1.93360 1.68459 1.87198 1.49315 1.93489 1.47398 1.70957 1.85831 1.30255 1.09965 1.22670 1.06647 1.18614 0.98186 0.90481 0.95034 1.20514 0.93184 1.27842 1.16114 0.95681 1.25937 0.95442 0.95417 0.99382 1.70037 1.02126 1.42352 1.42239 0.86067 0.79513 0.79216 0.80191 1.17930 1.21364 1.14420 1.22909 0.96228 1.04103 0.96390 1.23040 1.00664 0.95291 1.02172 1.20837 0.80750 1.01733 0.91175 0.85693 1.23365 0.75546 0.84773 0.83862 1.90655 1.52227 1.24087 1.75831 1.84335 1.57661 1.52975 1.36178 0.93616 0.89684 0.90398 0.88454 0.89551 0.91731 0.87471 0.88664 0.90334 0.85858 0.82580 0.91994 0.87618 0.90657 0.90053 0.87086 0.71150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.02 71.98 0.65 -1.11 16 2 C -0.10 -1.61 2.32 -10.72 -0.02 -1.64 16 3 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 4 C -0.10 -1.19 5.17 30.62 0.16 -1.04 16 5 C -0.14 -2.14 6.08 30.67 0.19 -1.95 16 6 C 0.11 2.56 6.33 86.36 0.55 3.10 16 7 N -1.00 -30.93 3.22 -494.68 -1.59 -32.52 16 8 S 2.62 118.50 3.85 -56.49 -0.22 118.28 16 9 O -0.99 -48.96 13.95 -117.49 -1.64 -50.60 16 10 O -0.99 -53.36 15.92 -127.65 -2.03 -55.40 16 11 C -0.56 -23.80 5.51 71.99 0.40 -23.40 16 12 C -0.02 -1.02 1.11 -52.93 -0.06 -1.08 16 13 C -0.54 -33.07 7.60 25.60 0.19 -32.88 16 14 H 0.02 1.77 8.06 -2.91 -0.02 1.75 16 15 C 0.04 2.41 5.47 84.65 0.46 2.88 16 16 N -0.93 -61.32 13.96 21.45 0.30 -61.02 16 17 Si 0.93 44.70 25.08 68.60 1.72 46.42 16 18 H -0.25 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.22 -9.31 5.36 99.48 0.53 -8.78 16 21 C -0.16 -6.95 9.88 30.59 0.30 -6.65 16 22 C -0.17 -7.28 7.64 30.59 0.23 -7.05 16 23 C 0.16 3.97 2.79 44.23 0.12 4.10 16 24 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 25 C 0.48 14.34 3.60 71.24 0.26 14.60 16 26 O -0.54 -18.68 12.47 29.45 0.37 -18.32 16 27 O -0.50 -12.60 13.42 -48.70 -0.65 -13.25 16 28 H 0.04 0.66 7.41 -2.39 -0.02 0.64 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 1.11 8.14 -2.39 -0.02 1.10 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 2.23 7.02 -2.38 -0.02 2.22 16 37 H 0.12 4.83 6.30 -2.39 -0.02 4.81 16 38 H 0.16 5.74 5.53 -2.39 -0.01 5.72 16 39 H 0.27 16.49 8.31 -92.71 -0.77 15.72 16 40 H 0.11 4.10 8.08 -2.39 -0.02 4.08 16 41 H 0.07 3.42 8.14 -2.39 -0.02 3.40 16 42 H 0.08 3.55 7.24 -2.39 -0.02 3.53 16 43 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 44 H 0.43 8.01 9.10 -74.06 -0.67 7.34 16 Total: -1.00 -86.96 350.53 -0.15 -87.11 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.17 Total: 31.40 kcal Atomic # 6 Polarization: -55.55 SS G_CDS: 3.43 Total: -52.12 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -1.29 Total: -93.54 kcal Atomic # 8 Polarization: -133.61 SS G_CDS: -3.96 Total: -137.56 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.72 Total: 46.42 kcal Atomic # 16 Polarization: 118.50 SS G_CDS: -0.22 Total: 118.28 kcal Total: -86.96 -0.15 -87.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424369855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.756 kcal (2) G-P(sol) polarization free energy of solvation -86.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds