Wall clock time and date at job start Tue Mar 31 2020 17:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.49583 * 2 1 4 4 C 1.53043 * 109.50121 * 239.93575 * 2 1 3 5 5 C 1.53032 * 109.53578 * 301.41166 * 4 2 1 6 6 C 1.53199 * 109.31490 * 298.63448 * 5 4 2 7 7 N 1.46921 * 108.77204 * 54.63664 * 6 5 4 8 8 S 1.65603 * 120.63168 * 126.11901 * 7 6 5 9 9 O 1.42101 * 104.27691 * 27.60452 * 8 7 6 10 10 O 1.42098 * 104.27886 * 155.46192 * 8 7 6 11 11 C 1.81403 * 104.44970 * 271.53685 * 8 7 6 12 12 C 1.53001 * 109.47164 * 186.41875 * 11 8 7 13 13 C 1.50701 * 115.54990 * 57.86259 * 12 11 8 14 14 H 1.07998 * 120.00122 * 264.07933 * 13 12 11 15 15 C 1.37875 * 119.99973 * 84.06907 * 13 12 11 16 16 N 1.31518 * 120.00035 * 0.47197 * 15 13 12 17 17 Si 1.86803 * 120.00164 * 180.47249 * 15 13 12 18 18 H 1.48498 * 109.47075 * 90.00002 * 17 15 13 19 19 H 1.48500 * 109.47312 * 210.00652 * 17 15 13 20 20 H 1.48505 * 109.46950 * 330.00435 * 17 15 13 21 21 C 1.53000 * 117.49767 * 272.19448 * 12 11 8 22 22 C 1.52990 * 117.49847 * 203.53231 * 12 11 8 23 23 C 1.46921 * 118.73974 * 306.39001 * 7 6 5 24 24 H 1.08998 * 109.59240 * 293.82120 * 23 7 6 25 25 C 1.50707 * 109.58678 * 173.39817 * 23 7 6 26 26 O 1.20826 * 120.00061 * 311.47242 * 25 23 7 27 27 O 1.34232 * 120.00032 * 131.47471 * 25 23 7 28 28 H 1.09000 * 109.46967 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47629 * 300.06447 * 1 2 3 30 30 H 1.09006 * 109.47036 * 60.07106 * 1 2 3 31 31 H 1.09000 * 109.46004 * 181.39118 * 4 2 1 32 32 H 1.09000 * 109.44577 * 61.42835 * 4 2 1 33 33 H 1.08996 * 109.49976 * 178.68093 * 5 4 2 34 34 H 1.09000 * 109.52492 * 58.60403 * 5 4 2 35 35 H 1.08992 * 109.58641 * 294.84696 * 6 5 4 36 36 H 1.08997 * 109.58513 * 174.42386 * 6 5 4 37 37 H 1.08997 * 109.46673 * 306.41991 * 11 8 7 38 38 H 1.08999 * 109.47276 * 66.41860 * 11 8 7 39 39 H 0.97006 * 119.99648 * 185.02711 * 16 15 13 40 40 H 1.08997 * 117.50085 * 0.02562 * 21 12 11 41 41 H 1.08999 * 117.49775 * 145.02390 * 21 12 11 42 42 H 1.09002 * 117.49935 * 214.98012 * 22 12 11 43 43 H 1.09003 * 117.49957 * 359.97438 * 22 12 11 44 44 H 0.96693 * 117.00402 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0409 -0.7227 -1.2486 5 6 1.5031 -2.1554 -1.2666 6 6 2.0141 -2.9040 -0.0315 7 7 1.6516 -2.1384 1.1690 8 16 0.8136 -2.8543 2.4050 9 8 1.1710 -4.2271 2.3218 10 8 1.1456 -2.0789 3.5486 11 6 -0.9305 -2.6227 1.9632 12 6 -1.8164 -3.1046 3.1138 13 6 -1.5797 -2.4326 4.4418 14 1 -0.9321 -2.8940 5.1727 15 6 -2.1897 -1.2287 4.7237 16 7 -2.9855 -0.6713 3.8373 17 14 -1.8859 -0.3892 6.3646 18 1 -0.7139 0.5153 6.2483 19 1 -3.0844 0.4000 6.7463 20 1 -1.6177 -1.4158 7.4036 21 6 -2.2108 -4.5827 3.1304 22 6 -3.2506 -3.5166 2.7764 23 6 2.0413 -0.7241 1.2494 24 1 3.1274 -0.6465 1.2979 25 6 1.4320 -0.1013 2.4791 26 8 0.2582 -0.2593 2.7179 27 8 2.1934 0.6289 3.3090 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5148 0.8894 30 1 -0.3633 0.5128 -0.8907 31 1 3.1306 -0.7440 -1.2355 32 1 1.6986 -0.1951 -2.1388 33 1 1.8482 -2.6622 -2.1677 34 1 0.4134 -2.1356 -1.2550 35 1 3.0980 -3.0042 -0.0875 36 1 1.5556 -3.8918 0.0127 37 1 -1.1206 -1.5658 1.7763 38 1 -1.1572 -3.1971 1.0650 39 1 -3.3567 0.2092 4.0047 40 1 -1.8389 -5.2120 2.3219 41 1 -2.2996 -5.0691 4.1019 42 1 -4.0229 -3.3020 3.5150 43 1 -3.5632 -3.4440 1.7346 44 1 1.7583 1.0079 4.0849 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424369858.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:04 Heat of formation + Delta-G solvation = -143.014263 kcal Electronic energy + Delta-G solvation = -30285.682391 eV Core-core repulsion = 26330.801250 eV Total energy + Delta-G solvation = -3954.881141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.72227 -39.38435 -38.51058 -37.99291 -36.83848 -36.64046 -34.17971 -33.92469 -32.80091 -29.92308 -28.30306 -27.31468 -26.29296 -24.26857 -22.98516 -22.64286 -21.38481 -20.54464 -19.39461 -19.08228 -18.51668 -18.34762 -17.38495 -17.00879 -16.63167 -16.60223 -16.17923 -16.01605 -15.68739 -15.41927 -15.15613 -14.84337 -14.42469 -14.29743 -13.83311 -13.70096 -13.64067 -13.21491 -13.09164 -13.01057 -12.89093 -12.81744 -12.65402 -12.57916 -12.40553 -12.25276 -12.16111 -12.10739 -11.87023 -11.75467 -11.56128 -11.42239 -11.15886 -10.95110 -10.82078 -10.38645 -10.11513 -9.72239 -8.04564 -6.14972 -0.51087 1.34236 1.37615 1.39254 1.47199 1.83266 2.20403 2.47825 3.02226 3.24895 3.35109 3.43840 3.60131 3.81780 3.98663 4.08148 4.17011 4.21160 4.28949 4.37507 4.40945 4.53457 4.56631 4.64553 4.71888 4.74386 4.89326 4.90908 4.95187 4.97851 5.07153 5.14843 5.23901 5.29711 5.34697 5.36854 5.53491 5.58589 5.59801 5.69673 5.82420 5.97428 6.31920 6.83712 7.14808 7.55757 9.03144 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.007094 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.801079 B = 3945.970420 C = 4683.240517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.089 4.089 3 H 0.105 0.895 4 C -0.101 4.101 5 C -0.140 4.140 6 C 0.111 3.889 7 N -0.994 5.994 8 S 2.616 3.384 9 O -1.004 7.004 10 O -0.972 6.972 11 C -0.545 4.545 12 C 0.022 3.978 13 C -0.514 4.514 14 H 0.036 0.964 15 C 0.067 3.933 16 N -0.881 5.881 17 Si 0.925 3.075 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.280 1.280 21 C -0.210 4.210 22 C -0.134 4.134 23 C 0.171 3.829 24 H 0.128 0.872 25 C 0.457 3.543 26 O -0.494 6.494 27 O -0.512 6.512 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.147 0.853 38 H 0.109 0.891 39 H 0.257 0.743 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.204 2.673 -14.540 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.109 4.109 3 H 0.124 0.876 4 C -0.138 4.138 5 C -0.179 4.179 6 C -0.012 4.012 7 N -0.834 5.834 8 S 2.716 3.284 9 O -0.995 6.995 10 O -0.962 6.962 11 C -0.678 4.678 12 C 0.020 3.980 13 C -0.552 4.552 14 H 0.054 0.946 15 C -0.137 4.137 16 N -0.517 5.517 17 Si 0.752 3.248 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.247 4.247 22 C -0.173 4.173 23 C 0.064 3.936 24 H 0.145 0.855 25 C 0.298 3.702 26 O -0.382 6.382 27 O -0.325 6.325 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.165 0.835 38 H 0.128 0.872 39 H 0.066 0.934 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 11.350 2.155 -14.061 18.198 hybrid contribution -1.067 0.947 1.649 2.180 sum 10.284 3.102 -12.412 16.414 Atomic orbital electron populations 1.22167 0.95389 1.02520 1.02222 1.21490 0.96129 1.00312 0.92932 0.87642 1.21497 1.01784 0.94624 0.95873 1.22064 1.01579 0.96704 0.97526 1.21797 1.02557 0.94070 0.82778 1.57768 1.71933 1.17863 1.35833 1.04566 0.77728 0.72474 0.73595 1.93433 1.83501 1.35598 1.86939 1.93459 1.82951 1.70075 1.49747 1.30014 1.20284 1.11987 1.05481 1.18382 0.95045 0.91836 0.92772 1.20335 1.28940 1.06806 0.99078 0.94595 1.25133 0.93183 0.96960 0.98378 1.70022 1.30982 1.15044 1.35691 0.86092 0.77627 0.79080 0.82022 1.20015 1.20685 1.20567 1.23289 1.06822 0.92659 1.01903 1.22414 0.93115 1.02174 0.99560 1.20618 1.01612 0.80609 0.90739 0.85476 1.23493 0.85720 0.76682 0.84326 1.90962 1.18379 1.56408 1.72427 1.84269 1.46244 1.63978 1.37978 0.92734 0.93859 0.90668 0.89296 0.89073 0.87506 0.91842 0.88521 0.89841 0.83510 0.87220 0.93396 0.88758 0.90165 0.91534 0.89903 0.72160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.35 7.39 71.98 0.53 -3.82 16 2 C -0.09 -1.78 2.80 -10.72 -0.03 -1.81 16 3 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 4 C -0.10 -1.32 5.43 30.62 0.17 -1.16 16 5 C -0.14 -2.15 5.74 30.67 0.18 -1.98 16 6 C 0.11 2.40 6.31 86.37 0.55 2.95 16 7 N -0.99 -29.92 2.66 -494.67 -1.31 -31.23 16 8 S 2.62 111.41 4.53 -56.49 -0.26 111.15 16 9 O -1.00 -45.64 16.78 -127.65 -2.14 -47.78 16 10 O -0.97 -48.02 12.05 -117.48 -1.42 -49.44 16 11 C -0.54 -23.94 4.76 71.98 0.34 -23.60 16 12 C 0.02 1.11 1.45 -52.93 -0.08 1.03 16 13 C -0.51 -29.58 7.21 25.60 0.18 -29.40 16 14 H 0.04 2.19 7.81 -2.91 -0.02 2.17 16 15 C 0.07 3.79 5.42 84.65 0.46 4.25 16 16 N -0.88 -50.14 12.79 21.45 0.27 -49.86 16 17 Si 0.92 46.25 29.54 68.60 2.03 48.28 16 18 H -0.27 -13.42 7.11 99.48 0.71 -12.72 16 19 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 21 C -0.21 -9.53 9.94 30.62 0.30 -9.22 16 22 C -0.13 -6.33 9.33 30.62 0.29 -6.05 16 23 C 0.17 4.58 3.07 44.23 0.14 4.71 16 24 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 25 C 0.46 16.20 4.44 71.24 0.32 16.51 16 26 O -0.49 -21.68 9.98 29.81 0.30 -21.38 16 27 O -0.51 -16.22 13.42 -49.51 -0.66 -16.89 16 28 H 0.05 1.55 4.22 -2.39 -0.01 1.54 16 29 H 0.04 1.45 5.89 -2.39 -0.01 1.43 16 30 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.15 6.34 -2.39 -0.02 1.13 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.96 7.14 -2.39 -0.02 1.94 16 37 H 0.15 6.82 4.66 -2.39 -0.01 6.80 16 38 H 0.11 4.09 8.11 -2.39 -0.02 4.07 16 39 H 0.26 14.13 8.32 -92.70 -0.77 13.36 16 40 H 0.09 3.78 8.14 -2.39 -0.02 3.76 16 41 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 42 H 0.07 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 44 H 0.42 11.88 9.10 -74.06 -0.67 11.21 16 Total: -1.00 -75.91 347.52 0.50 -75.41 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.35 Total: 29.32 kcal Atomic # 6 Polarization: -50.92 SS G_CDS: 3.34 Total: -47.58 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -1.04 Total: -81.10 kcal Atomic # 8 Polarization: -131.56 SS G_CDS: -3.93 Total: -135.48 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 16 Polarization: 111.41 SS G_CDS: -0.26 Total: 111.15 kcal Total: -75.91 0.50 -75.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424369858.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.607 kcal (2) G-P(sol) polarization free energy of solvation -75.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds