Wall clock time and date at job start Tue Mar 31 2020 17:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.49599 * 2 1 4 4 C 1.53036 * 109.49977 * 120.09234 * 2 1 3 5 5 C 1.53044 * 109.54212 * 181.32075 * 4 2 1 6 6 C 1.53626 * 109.23949 * 298.51421 * 5 4 2 7 7 N 1.46928 * 108.54439 * 54.85392 * 6 5 4 8 8 S 1.65596 * 120.63078 * 126.36889 * 7 6 5 9 9 O 1.42105 * 104.27554 * 149.46341 * 8 7 6 10 10 O 1.42101 * 104.27777 * 21.60996 * 8 7 6 11 11 C 1.81397 * 104.45121 * 265.53497 * 8 7 6 12 12 C 1.53001 * 109.47374 * 189.79166 * 11 8 7 13 13 C 1.50698 * 115.55773 * 323.91758 * 12 11 8 14 14 H 1.07998 * 120.00810 * 91.55777 * 13 12 11 15 15 C 1.37887 * 119.99666 * 271.55089 * 13 12 11 16 16 N 1.31513 * 119.99503 * 6.38343 * 15 13 12 17 17 Si 1.86801 * 119.99928 * 186.38401 * 15 13 12 18 18 H 1.48497 * 109.47002 * 90.00098 * 17 15 13 19 19 H 1.48500 * 109.46974 * 210.00123 * 17 15 13 20 20 H 1.48494 * 109.47041 * 329.99961 * 17 15 13 21 21 C 1.52998 * 117.50097 * 178.22165 * 12 11 8 22 22 C 1.53002 * 117.49650 * 109.59773 * 12 11 8 23 23 C 1.46926 * 118.73896 * 306.09297 * 7 6 5 24 24 H 1.09007 * 109.58637 * 293.93456 * 23 7 6 25 25 C 1.50699 * 109.58875 * 173.64734 * 23 7 6 26 26 O 1.20819 * 119.99894 * 307.02695 * 25 23 7 27 27 O 1.34231 * 119.99936 * 127.02375 * 25 23 7 28 28 H 1.09009 * 109.46961 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47710 * 300.06339 * 1 2 3 30 30 H 1.08997 * 109.47405 * 60.07219 * 1 2 3 31 31 H 1.09005 * 109.46036 * 301.33912 * 4 2 1 32 32 H 1.08995 * 109.46322 * 61.31208 * 4 2 1 33 33 H 1.09000 * 109.49442 * 58.58419 * 5 4 2 34 34 H 1.09000 * 109.50079 * 178.65197 * 5 4 2 35 35 H 1.09004 * 109.73897 * 295.11421 * 6 5 4 36 36 H 1.08995 * 109.66572 * 174.54716 * 6 5 4 37 37 H 1.09000 * 109.47251 * 69.79343 * 11 8 7 38 38 H 1.09001 * 109.46781 * 309.78822 * 11 8 7 39 39 H 0.97002 * 119.99086 * 174.99858 * 16 15 13 40 40 H 1.09002 * 117.49517 * 145.01999 * 21 12 11 41 41 H 1.08997 * 117.49395 * 0.02562 * 21 12 11 42 42 H 1.08992 * 117.50273 * 0.02562 * 22 12 11 43 43 H 1.09004 * 117.51415 * 214.97040 * 22 12 11 44 44 H 0.96698 * 116.99833 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0408 -0.7233 1.2482 5 6 3.5708 -0.6952 1.2659 6 6 4.1051 -1.4316 0.0280 7 7 3.5046 -0.8287 -1.1698 8 16 4.4587 -0.2844 -2.4090 9 8 3.6607 -0.4650 -3.5709 10 8 5.6824 -0.9877 -2.2441 11 6 4.6876 1.4814 -2.0621 12 6 5.3510 2.1556 -3.2647 13 6 6.3756 1.3243 -3.9927 14 1 6.0769 0.7087 -4.8283 15 6 7.6948 1.3497 -3.5921 16 7 8.0381 1.9984 -2.5008 17 14 8.9941 0.4627 -4.5994 18 1 9.5453 1.3884 -5.6213 19 1 10.0873 0.0055 -3.7045 20 1 8.3824 -0.7108 -5.2730 21 6 5.5929 3.6642 -3.1843 22 6 4.4965 3.1129 -4.0981 23 6 2.0413 -0.7234 -1.2498 24 1 1.6055 -1.7212 -1.3010 25 6 1.6576 0.0592 -2.4791 26 8 2.1394 1.1495 -2.6759 27 8 0.7804 -0.4550 -3.3554 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5148 0.8893 30 1 -0.3634 0.5127 -0.8906 31 1 1.6581 -0.2249 2.1389 32 1 1.6970 -1.7575 1.2348 33 1 3.9158 0.3387 1.2542 34 1 3.9334 -1.1895 2.1672 35 1 3.8340 -2.4860 0.0814 36 1 5.1896 -1.3330 -0.0178 37 1 5.3219 1.5999 -1.1836 38 1 3.7182 1.9436 -1.8755 39 1 8.9522 1.9563 -2.1791 40 1 6.4934 4.0554 -3.6579 41 1 5.2799 4.1762 -2.2745 42 1 3.4620 3.2627 -3.7894 43 1 4.6756 3.1418 -5.1729 44 1 0.5656 0.0839 -4.1290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424369861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:18 Heat of formation + Delta-G solvation = -134.247526 kcal Electronic energy + Delta-G solvation = -29631.951924 eV Core-core repulsion = 25677.450937 eV Total energy + Delta-G solvation = -3954.500986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.60233 -38.28938 -36.59581 -36.29239 -35.62732 -34.95628 -33.53747 -32.07070 -31.97217 -28.01316 -27.35697 -25.59074 -25.21022 -22.85444 -21.44914 -21.01177 -20.31710 -19.29369 -18.32243 -17.97837 -17.22445 -16.43166 -16.24895 -15.93957 -15.13645 -14.94618 -14.68648 -14.39021 -14.19658 -14.03720 -13.76559 -13.61519 -13.18833 -13.01758 -12.84441 -12.59715 -12.12128 -11.99974 -11.74049 -11.56234 -11.30723 -11.23559 -11.10054 -11.02637 -10.94391 -10.91395 -10.84184 -10.79343 -10.49191 -10.44730 -10.20912 -10.06606 -9.95686 -9.56675 -8.95231 -8.74724 -8.42097 -7.95241 -6.10410 -4.25682 1.16635 2.29758 2.93788 3.33838 3.39534 3.47408 3.55324 4.42217 4.43367 4.57352 4.67099 4.87095 4.92480 5.06232 5.14203 5.17091 5.21721 5.27631 5.33621 5.38610 5.47105 5.51629 5.60608 5.71385 5.83088 5.86933 5.94541 5.99187 6.00511 6.18426 6.24138 6.25630 6.48690 6.58884 6.69205 6.80337 6.90724 6.94510 7.10899 7.32879 7.56604 7.83317 8.07669 8.31687 8.84707 9.51019 10.96754 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.005568 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.421644 B = 5027.326322 C = 5508.289338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 H 0.089 0.911 4 C -0.107 4.107 5 C -0.140 4.140 6 C 0.121 3.879 7 N -1.008 6.008 8 S 2.619 3.381 9 O -0.969 6.969 10 O -0.945 6.945 11 C -0.548 4.548 12 C 0.056 3.944 13 C -0.547 4.547 14 H 0.067 0.933 15 C 0.096 3.904 16 N -0.865 5.865 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.282 1.282 20 H -0.268 1.268 21 C -0.144 4.144 22 C -0.197 4.197 23 C 0.172 3.828 24 H 0.102 0.898 25 C 0.486 3.514 26 O -0.503 6.503 27 O -0.504 6.504 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.264 0.736 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.704 -4.722 9.232 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.144 4.144 5 C -0.179 4.179 6 C -0.003 4.003 7 N -0.844 5.844 8 S 2.720 3.280 9 O -0.960 6.960 10 O -0.936 6.936 11 C -0.681 4.681 12 C 0.053 3.947 13 C -0.585 4.585 14 H 0.085 0.915 15 C -0.112 4.112 16 N -0.499 5.499 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.207 1.207 20 H -0.192 1.192 21 C -0.183 4.183 22 C -0.234 4.234 23 C 0.064 3.936 24 H 0.120 0.880 25 C 0.328 3.672 26 O -0.392 6.392 27 O -0.315 6.315 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.142 0.858 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -13.984 -5.179 8.914 17.374 hybrid contribution 0.580 0.517 -0.568 0.963 sum -13.404 -4.662 8.345 16.464 Atomic orbital electron populations 1.21864 0.94013 1.02539 1.02385 1.21546 0.96129 1.00900 0.93422 0.89274 1.21512 0.95678 1.00724 0.96528 1.22073 0.95695 1.02087 0.98076 1.21535 0.99043 0.96779 0.82971 1.58445 1.12716 1.76882 1.36348 1.04881 0.72511 0.78262 0.72340 1.93397 1.68977 1.86721 1.46877 1.93498 1.43796 1.71480 1.84788 1.30059 1.08116 1.21521 1.08433 1.18064 0.95588 0.89615 0.91386 1.20688 0.92059 1.28587 1.17173 0.91477 1.24932 0.98344 0.93370 0.94518 1.69973 1.19093 1.39929 1.20871 0.86607 0.81129 0.80302 0.80285 1.20356 1.20699 1.19196 1.22484 0.98471 0.98220 0.99110 1.23072 0.94766 1.08345 0.97246 1.20316 0.82870 1.00059 0.90380 0.88042 1.22875 0.75897 0.85144 0.83311 1.90741 1.50894 1.22344 1.75198 1.84354 1.58843 1.52712 1.35556 0.91881 0.91641 0.92516 0.91069 0.91392 0.90897 0.90422 0.91162 0.88044 0.86800 0.85793 0.92588 0.89808 0.91857 0.90778 0.90355 0.72682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.02 37.15 0.34 -0.95 16 2 C -0.10 -1.08 2.32 -90.50 -0.21 -1.29 16 3 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 4 C -0.11 -0.95 5.16 -26.69 -0.14 -1.09 16 5 C -0.14 -1.46 6.10 -26.38 -0.16 -1.62 16 6 C 0.12 1.64 6.37 -3.48 -0.02 1.62 16 7 N -1.01 -16.76 3.21 -107.45 -0.35 -17.11 16 8 S 2.62 59.46 3.72 -107.50 -0.40 59.06 16 9 O -0.97 -23.52 14.13 -67.99 -0.96 -24.49 16 10 O -0.95 -24.43 15.95 -57.54 -0.92 -25.34 16 11 C -0.55 -12.62 5.68 37.16 0.21 -12.41 16 12 C 0.06 1.45 1.75 -155.66 -0.27 1.18 16 13 C -0.55 -15.83 6.95 -34.44 -0.24 -16.07 16 14 H 0.07 2.01 7.82 -52.49 -0.41 1.59 16 15 C 0.10 2.75 5.37 -17.82 -0.10 2.65 16 16 N -0.86 -24.82 12.77 55.43 0.71 -24.11 16 17 Si 0.89 22.54 29.55 -169.99 -5.02 17.52 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 21 C -0.14 -3.53 9.26 -26.73 -0.25 -3.78 16 22 C -0.20 -4.67 9.88 -26.73 -0.26 -4.94 16 23 C 0.17 2.41 2.78 -68.75 -0.19 2.21 16 24 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 25 C 0.49 7.85 3.59 36.01 0.13 7.98 16 26 O -0.50 -9.45 12.40 -26.45 -0.33 -9.78 16 27 O -0.50 -6.88 13.42 -41.98 -0.56 -7.44 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.52 7.41 -51.93 -0.38 0.14 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.10 1.53 6.96 -51.93 -0.36 1.17 16 37 H 0.11 2.61 8.14 -51.92 -0.42 2.19 16 38 H 0.12 2.61 5.34 -51.92 -0.28 2.33 16 39 H 0.26 7.19 8.32 -40.82 -0.34 6.85 16 40 H 0.08 2.15 8.14 -51.93 -0.42 1.73 16 41 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 42 H 0.07 1.63 8.06 -51.93 -0.42 1.21 16 43 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 44 H 0.41 4.23 9.10 45.56 0.41 4.64 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -35.46 359.53 -9.64 -45.10 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.07 Total: 7.66 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -1.17 Total: -26.50 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.36 Total: -41.22 kcal Atomic # 8 Polarization: -64.28 SS G_CDS: -2.77 Total: -67.05 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: 59.46 SS G_CDS: -0.40 Total: 59.06 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.46 -9.64 -45.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424369861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.147 kcal (2) G-P(sol) polarization free energy of solvation -35.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds