Wall clock time and date at job start Tue Mar 31 2020 17:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.49678 * 2 1 4 4 C 1.53040 * 109.52451 * 120.08232 * 2 1 3 5 5 C 1.53044 * 109.53762 * 58.60576 * 4 2 1 6 6 C 1.53192 * 109.31486 * 61.36344 * 5 4 2 7 7 N 1.46923 * 108.77570 * 305.36687 * 6 5 4 8 8 S 1.65601 * 120.63012 * 233.58905 * 7 6 5 9 9 O 1.42104 * 104.27612 * 208.51357 * 8 7 6 10 10 O 1.42095 * 104.27600 * 336.37173 * 8 7 6 11 11 C 1.81397 * 104.45167 * 92.44256 * 8 7 6 12 12 C 1.53000 * 109.47067 * 171.75998 * 11 8 7 13 13 C 1.50698 * 115.55162 * 40.11592 * 12 11 8 14 14 H 1.08002 * 120.00007 * 267.40297 * 13 12 11 15 15 C 1.37875 * 120.00109 * 87.40105 * 13 12 11 16 16 N 1.31516 * 120.00180 * 2.28401 * 15 13 12 17 17 Si 1.86800 * 120.00108 * 182.28068 * 15 13 12 18 18 H 1.48503 * 109.46753 * 90.00211 * 17 15 13 19 19 H 1.48499 * 109.47192 * 209.99819 * 17 15 13 20 20 H 1.48494 * 109.47268 * 330.00274 * 17 15 13 21 21 C 1.53001 * 117.50055 * 254.40161 * 12 11 8 22 22 C 1.52998 * 60.00285 * 252.51091 * 21 12 11 23 23 C 1.46927 * 118.74095 * 53.60732 * 7 6 5 24 24 H 1.08995 * 109.58633 * 66.18252 * 23 7 6 25 25 C 1.50707 * 109.58754 * 186.46374 * 23 7 6 26 26 O 1.20827 * 119.99705 * 50.25864 * 25 23 7 27 27 O 1.34227 * 119.99563 * 230.26359 * 25 23 7 28 28 H 1.09001 * 109.46601 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47006 * 300.05994 * 1 2 3 30 30 H 1.09005 * 109.47202 * 60.06460 * 1 2 3 31 31 H 1.09003 * 109.45517 * 178.62012 * 4 2 1 32 32 H 1.08998 * 109.45997 * 298.59671 * 4 2 1 33 33 H 1.08998 * 109.49362 * 301.41367 * 5 4 2 34 34 H 1.09002 * 109.49634 * 181.31512 * 5 4 2 35 35 H 1.09003 * 109.58597 * 185.57753 * 6 5 4 36 36 H 1.08993 * 109.58406 * 65.15145 * 6 5 4 37 37 H 1.08996 * 109.47212 * 291.75964 * 11 8 7 38 38 H 1.09002 * 109.47148 * 51.75919 * 11 8 7 39 39 H 0.96995 * 120.00520 * 185.01678 * 16 15 13 40 40 H 1.09003 * 117.49661 * 0.02562 * 21 12 11 41 41 H 1.09003 * 117.49788 * 145.01591 * 21 12 11 42 42 H 1.08995 * 117.50262 * 252.50796 * 22 21 12 43 43 H 1.09003 * 117.49241 * 107.48935 * 22 21 12 44 44 H 0.96708 * 116.99432 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 1.5044 -2.1560 1.2657 6 6 2.0154 -2.9038 0.0302 7 7 1.6523 -2.1380 -1.1699 8 16 0.8207 -2.8557 -2.4091 9 8 1.2254 -2.1360 -3.5657 10 8 1.1092 -4.2400 -2.2693 11 6 -0.9234 -2.5279 -2.0335 12 6 -1.7907 -2.9653 -3.2156 13 6 -1.3818 -4.2548 -3.8797 14 1 -0.7132 -4.2372 -4.7277 15 6 -1.8613 -5.4571 -3.4047 16 7 -2.7106 -5.4759 -2.4007 17 14 -1.3047 -7.0594 -4.1872 18 1 -0.0889 -7.5535 -3.4922 19 1 -2.3868 -8.0696 -4.0701 20 1 -0.9958 -6.8288 -5.6213 21 6 -2.3787 -1.8677 -4.1048 22 6 -3.2859 -2.6473 -3.1508 23 6 2.0414 -0.7234 -1.2499 24 1 3.1274 -0.6454 -1.2986 25 6 1.4344 -0.1013 -2.4810 26 8 0.2546 -0.2339 -2.7059 27 8 2.2045 0.5999 -3.3278 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5148 0.8895 30 1 -0.3634 0.5128 -0.8906 31 1 3.1312 -0.7438 1.2347 32 1 1.6992 -0.1961 2.1388 33 1 0.4147 -2.1362 1.2540 34 1 1.8500 -2.6630 2.1666 35 1 1.5573 -3.8919 -0.0143 36 1 3.0994 -3.0035 0.0859 37 1 -1.2144 -3.0857 -1.1434 38 1 -1.0626 -1.4615 -1.8557 39 1 -2.9918 -6.3221 -2.0191 40 1 -2.1473 -0.8340 -3.8478 41 1 -2.4696 -2.0781 -5.1704 42 1 -3.9738 -3.3705 -3.5887 43 1 -3.6517 -2.1263 -2.2659 44 1 1.7701 0.9804 -4.1036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424369863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:22 Heat of formation + Delta-G solvation = -126.657420 kcal Electronic energy + Delta-G solvation = -30003.005599 eV Core-core repulsion = 26048.833745 eV Total energy + Delta-G solvation = -3954.171855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74378 -38.43225 -36.60798 -36.34939 -35.59119 -34.99004 -33.14244 -31.96194 -31.92192 -28.26518 -27.27839 -25.49662 -25.25620 -23.31477 -21.67245 -20.98460 -19.74972 -19.17749 -18.28005 -17.98003 -17.20938 -16.43555 -16.26259 -15.74695 -15.24908 -14.97112 -14.87158 -14.55004 -14.24453 -14.16977 -13.64378 -13.50931 -13.31822 -12.94573 -12.90815 -12.29105 -12.02669 -11.81080 -11.72961 -11.54036 -11.35424 -11.22718 -11.13156 -11.02396 -10.97749 -10.89180 -10.80865 -10.70400 -10.41760 -10.30161 -10.15895 -10.03086 -9.90392 -9.52053 -8.97866 -8.78964 -8.37783 -7.93507 -6.08979 -4.24315 1.14512 2.30535 2.92743 3.36515 3.43422 3.47463 3.53121 4.44005 4.45275 4.61040 4.68964 4.88670 4.91765 5.05728 5.11804 5.21968 5.25005 5.28881 5.38602 5.41298 5.50257 5.64894 5.71575 5.75852 5.87026 5.94049 5.97807 6.01050 6.14068 6.17133 6.25270 6.39751 6.54018 6.59240 6.70880 6.79861 6.91504 6.93624 7.12583 7.34243 7.61304 7.83323 8.07756 8.31340 8.84919 9.52181 10.97905 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.005973 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.542576 B = 4686.532027 C = 5103.831803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 H 0.085 0.915 4 C -0.107 4.107 5 C -0.143 4.143 6 C 0.123 3.877 7 N -1.004 6.004 8 S 2.618 3.382 9 O -0.970 6.970 10 O -0.947 6.947 11 C -0.548 4.548 12 C 0.051 3.949 13 C -0.539 4.539 14 H 0.065 0.935 15 C 0.094 3.906 16 N -0.868 5.868 17 Si 0.885 3.115 18 H -0.269 1.269 19 H -0.284 1.284 20 H -0.270 1.270 21 C -0.198 4.198 22 C -0.138 4.138 23 C 0.171 3.829 24 H 0.102 0.898 25 C 0.486 3.514 26 O -0.498 6.498 27 O -0.506 6.506 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.263 0.737 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.124 12.136 8.995 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.114 4.114 3 H 0.103 0.897 4 C -0.144 4.144 5 C -0.182 4.182 6 C -0.002 4.002 7 N -0.841 5.841 8 S 2.719 3.281 9 O -0.960 6.960 10 O -0.938 6.938 11 C -0.682 4.682 12 C 0.049 3.951 13 C -0.577 4.577 14 H 0.083 0.917 15 C -0.112 4.112 16 N -0.503 5.503 17 Si 0.712 3.288 18 H -0.194 1.194 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.235 4.235 22 C -0.177 4.177 23 C 0.063 3.937 24 H 0.120 0.880 25 C 0.328 3.672 26 O -0.387 6.387 27 O -0.317 6.317 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.145 0.855 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 9.306 11.324 8.644 17.016 hybrid contribution -0.530 -0.421 -0.406 0.789 sum 8.776 10.903 8.238 16.241 Atomic orbital electron populations 1.22253 0.93786 1.03809 1.02756 1.21413 0.97718 0.99040 0.93260 0.89696 1.21470 1.00575 0.95753 0.96617 1.22041 1.02279 0.95834 0.98022 1.21425 1.00806 0.94988 0.82996 1.58361 1.73234 1.16436 1.36067 1.04919 0.77512 0.73214 0.72500 1.93402 1.81859 1.73398 1.47361 1.93505 1.84056 1.31216 1.84975 1.30106 1.20374 1.09190 1.08506 1.18096 0.92011 0.93399 0.91633 1.20656 1.31021 0.89274 1.16711 0.91688 1.24907 0.92646 0.99155 0.94539 1.70002 1.29986 1.26537 1.23754 0.86667 0.78870 0.82985 0.80307 1.19443 1.21015 1.19470 1.23071 1.07872 0.95773 0.96828 1.22463 0.94938 1.01330 0.98996 1.20259 1.00602 0.82335 0.90540 0.88027 1.22813 0.85327 0.75728 0.83306 1.90723 1.17382 1.56932 1.73654 1.84349 1.45687 1.64858 1.36828 0.91125 0.92339 0.90864 0.91474 0.91120 0.90597 0.90527 0.88224 0.91164 0.86953 0.85464 0.92721 0.90741 0.90403 0.89554 0.91964 0.72644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 7.34 37.16 0.27 -1.77 16 2 C -0.09 -0.99 2.80 -90.50 -0.25 -1.24 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -0.93 5.43 -26.69 -0.14 -1.07 16 5 C -0.14 -1.47 5.74 -26.61 -0.15 -1.62 16 6 C 0.12 1.63 6.33 -3.71 -0.02 1.61 16 7 N -1.00 -16.26 2.66 -107.70 -0.29 -16.55 16 8 S 2.62 58.25 3.85 -107.50 -0.41 57.83 16 9 O -0.97 -23.05 13.85 -67.90 -0.94 -23.99 16 10 O -0.95 -24.22 15.92 -57.54 -0.92 -25.13 16 11 C -0.55 -12.32 4.82 37.16 0.18 -12.15 16 12 C 0.05 1.31 1.75 -155.66 -0.27 1.04 16 13 C -0.54 -15.54 7.02 -34.44 -0.24 -15.78 16 14 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 15 C 0.09 2.69 5.42 -17.82 -0.10 2.59 16 16 N -0.87 -24.77 12.56 55.43 0.70 -24.07 16 17 Si 0.89 22.54 29.54 -169.99 -5.02 17.51 16 18 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.20 -4.68 9.88 -26.73 -0.26 -4.94 16 22 C -0.14 -3.37 9.09 -26.73 -0.24 -3.62 16 23 C 0.17 2.31 3.05 -68.74 -0.21 2.10 16 24 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 25 C 0.49 7.60 4.41 36.01 0.16 7.76 16 26 O -0.50 -9.00 9.85 -26.71 -0.26 -9.26 16 27 O -0.51 -6.68 13.42 -41.20 -0.55 -7.24 16 28 H 0.07 0.97 4.33 -51.93 -0.22 0.74 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.99 5.75 -51.93 -0.30 0.69 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.85 6.34 -51.93 -0.33 0.52 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.48 7.02 -51.93 -0.36 1.12 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.11 2.52 8.14 -51.93 -0.42 2.10 16 38 H 0.13 2.58 4.02 -51.92 -0.21 2.37 16 39 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 40 H 0.07 1.63 8.09 -51.93 -0.42 1.21 16 41 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 42 H 0.09 2.23 8.12 -51.93 -0.42 1.81 16 43 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.41 4.04 9.10 45.56 0.41 4.45 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -35.17 346.36 -9.40 -44.57 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.63 Total: 8.20 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -1.29 Total: -27.09 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.41 Total: -40.62 kcal Atomic # 8 Polarization: -62.95 SS G_CDS: -2.67 Total: -65.62 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 16 Polarization: 58.25 SS G_CDS: -0.41 Total: 57.83 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.17 -9.40 -44.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424369863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.091 kcal (2) G-P(sol) polarization free energy of solvation -35.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds