Wall clock time and date at job start Tue Mar 31 2020 17:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.49678 * 2 1 4 4 C 1.53040 * 109.52451 * 120.08232 * 2 1 3 5 5 C 1.53044 * 109.53762 * 58.60576 * 4 2 1 6 6 C 1.53192 * 109.31486 * 61.36344 * 5 4 2 7 7 N 1.46923 * 108.77570 * 305.36687 * 6 5 4 8 8 S 1.65601 * 120.63012 * 233.58905 * 7 6 5 9 9 O 1.42104 * 104.27612 * 208.51357 * 8 7 6 10 10 O 1.42095 * 104.27600 * 336.37173 * 8 7 6 11 11 C 1.81397 * 104.45167 * 92.44256 * 8 7 6 12 12 C 1.53000 * 109.47067 * 171.75998 * 11 8 7 13 13 C 1.50698 * 115.55162 * 40.11592 * 12 11 8 14 14 H 1.08002 * 120.00007 * 267.40297 * 13 12 11 15 15 C 1.37875 * 120.00109 * 87.40105 * 13 12 11 16 16 N 1.31516 * 120.00180 * 2.28401 * 15 13 12 17 17 Si 1.86800 * 120.00108 * 182.28068 * 15 13 12 18 18 H 1.48503 * 109.46753 * 90.00211 * 17 15 13 19 19 H 1.48499 * 109.47192 * 209.99819 * 17 15 13 20 20 H 1.48494 * 109.47268 * 330.00274 * 17 15 13 21 21 C 1.53001 * 117.50055 * 254.40161 * 12 11 8 22 22 C 1.52998 * 60.00285 * 252.51091 * 21 12 11 23 23 C 1.46927 * 118.74095 * 53.60732 * 7 6 5 24 24 H 1.08995 * 109.58633 * 66.18252 * 23 7 6 25 25 C 1.50707 * 109.58754 * 186.46374 * 23 7 6 26 26 O 1.20827 * 119.99705 * 50.25864 * 25 23 7 27 27 O 1.34227 * 119.99563 * 230.26359 * 25 23 7 28 28 H 1.09001 * 109.46601 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47006 * 300.05994 * 1 2 3 30 30 H 1.09005 * 109.47202 * 60.06460 * 1 2 3 31 31 H 1.09003 * 109.45517 * 178.62012 * 4 2 1 32 32 H 1.08998 * 109.45997 * 298.59671 * 4 2 1 33 33 H 1.08998 * 109.49362 * 301.41367 * 5 4 2 34 34 H 1.09002 * 109.49634 * 181.31512 * 5 4 2 35 35 H 1.09003 * 109.58597 * 185.57753 * 6 5 4 36 36 H 1.08993 * 109.58406 * 65.15145 * 6 5 4 37 37 H 1.08996 * 109.47212 * 291.75964 * 11 8 7 38 38 H 1.09002 * 109.47148 * 51.75919 * 11 8 7 39 39 H 0.96995 * 120.00520 * 185.01678 * 16 15 13 40 40 H 1.09003 * 117.49661 * 0.02562 * 21 12 11 41 41 H 1.09003 * 117.49788 * 145.01591 * 21 12 11 42 42 H 1.08995 * 117.50262 * 252.50796 * 22 21 12 43 43 H 1.09003 * 117.49241 * 107.48935 * 22 21 12 44 44 H 0.96708 * 116.99432 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 1.5044 -2.1560 1.2657 6 6 2.0154 -2.9038 0.0302 7 7 1.6523 -2.1380 -1.1699 8 16 0.8207 -2.8557 -2.4091 9 8 1.2254 -2.1360 -3.5657 10 8 1.1092 -4.2400 -2.2693 11 6 -0.9234 -2.5279 -2.0335 12 6 -1.7907 -2.9653 -3.2156 13 6 -1.3818 -4.2548 -3.8797 14 1 -0.7132 -4.2372 -4.7277 15 6 -1.8613 -5.4571 -3.4047 16 7 -2.7106 -5.4759 -2.4007 17 14 -1.3047 -7.0594 -4.1872 18 1 -0.0889 -7.5535 -3.4922 19 1 -2.3868 -8.0696 -4.0701 20 1 -0.9958 -6.8288 -5.6213 21 6 -2.3787 -1.8677 -4.1048 22 6 -3.2859 -2.6473 -3.1508 23 6 2.0414 -0.7234 -1.2499 24 1 3.1274 -0.6454 -1.2986 25 6 1.4344 -0.1013 -2.4810 26 8 0.2546 -0.2339 -2.7059 27 8 2.2045 0.5999 -3.3278 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5148 0.8895 30 1 -0.3634 0.5128 -0.8906 31 1 3.1312 -0.7438 1.2347 32 1 1.6992 -0.1961 2.1388 33 1 0.4147 -2.1362 1.2540 34 1 1.8500 -2.6630 2.1666 35 1 1.5573 -3.8919 -0.0143 36 1 3.0994 -3.0035 0.0859 37 1 -1.2144 -3.0857 -1.1434 38 1 -1.0626 -1.4615 -1.8557 39 1 -2.9918 -6.3221 -2.0191 40 1 -2.1473 -0.8340 -3.8478 41 1 -2.4696 -2.0781 -5.1704 42 1 -3.9738 -3.3705 -3.5887 43 1 -3.6517 -2.1263 -2.2659 44 1 1.7701 0.9804 -4.1036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424369863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:21 Heat of formation + Delta-G solvation = -151.499727 kcal Electronic energy + Delta-G solvation = -30004.082843 eV Core-core repulsion = 26048.833745 eV Total energy + Delta-G solvation = -3955.249098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.86984 -39.45906 -38.53631 -38.00368 -36.89154 -36.80692 -34.20488 -34.12010 -32.86681 -29.98259 -28.40770 -27.48809 -26.34154 -24.32328 -22.96138 -22.71795 -21.45665 -20.61589 -19.44776 -19.21770 -18.75742 -18.34187 -17.55214 -17.06033 -16.91915 -16.47757 -16.23365 -16.02603 -15.69661 -15.48201 -15.19837 -14.81626 -14.47267 -14.42656 -13.96439 -13.84680 -13.76157 -13.18314 -13.08892 -13.07863 -12.96351 -12.86121 -12.81838 -12.64836 -12.40376 -12.27781 -12.18495 -12.05085 -11.99370 -11.86345 -11.70714 -11.45062 -11.21375 -11.03567 -10.94532 -10.48243 -10.12735 -9.79495 -8.26462 -6.46154 -0.52297 1.12027 1.30053 1.37278 1.41440 1.80939 2.15980 2.35122 3.01575 3.03668 3.29358 3.47084 3.55739 3.80258 3.98537 4.04747 4.11922 4.18086 4.29119 4.32716 4.37867 4.56078 4.62407 4.68914 4.70530 4.72286 4.86626 4.87375 4.95697 5.00297 5.06039 5.13632 5.15998 5.27635 5.31527 5.34314 5.40279 5.55664 5.61875 5.63456 5.63990 5.79818 6.19903 6.64225 6.99793 7.31142 8.80272 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.005973 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.542576 B = 4686.532027 C = 5103.831803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 H 0.116 0.884 4 C -0.101 4.101 5 C -0.140 4.140 6 C 0.111 3.889 7 N -0.997 5.997 8 S 2.628 3.372 9 O -0.994 6.994 10 O -0.992 6.992 11 C -0.541 4.541 12 C 0.021 3.979 13 C -0.557 4.557 14 H 0.042 0.958 15 C 0.056 3.944 16 N -0.884 5.884 17 Si 0.923 3.077 18 H -0.275 1.275 19 H -0.264 1.264 20 H -0.268 1.268 21 C -0.184 4.184 22 C -0.135 4.135 23 C 0.162 3.838 24 H 0.130 0.870 25 C 0.478 3.522 26 O -0.529 6.529 27 O -0.501 6.501 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.148 0.852 39 H 0.268 0.732 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.590 13.785 10.925 20.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.108 4.108 3 H 0.134 0.866 4 C -0.138 4.138 5 C -0.179 4.179 6 C -0.012 4.012 7 N -0.838 5.838 8 S 2.728 3.272 9 O -0.984 6.984 10 O -0.982 6.982 11 C -0.674 4.674 12 C 0.019 3.981 13 C -0.595 4.595 14 H 0.060 0.940 15 C -0.149 4.149 16 N -0.519 5.519 17 Si 0.748 3.252 18 H -0.201 1.201 19 H -0.188 1.188 20 H -0.192 1.192 21 C -0.221 4.221 22 C -0.174 4.174 23 C 0.055 3.945 24 H 0.148 0.852 25 C 0.321 3.679 26 O -0.420 6.420 27 O -0.313 6.313 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.166 0.834 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 10.761 12.978 10.552 19.889 hybrid contribution -0.932 -0.841 -1.010 1.611 sum 9.829 12.137 9.543 18.302 Atomic orbital electron populations 1.22260 0.95351 1.02433 1.02949 1.21516 0.96362 1.00529 0.92410 0.86632 1.21509 1.01855 0.94108 0.96342 1.22060 1.01504 0.97164 0.97184 1.21755 1.02357 0.94089 0.83049 1.57851 1.72216 1.18013 1.35688 1.04187 0.77462 0.72398 0.73113 1.93361 1.82034 1.73548 1.49441 1.93441 1.84574 1.34200 1.86005 1.30021 1.20683 1.10175 1.06566 1.18249 0.93255 0.93246 0.93345 1.20770 1.30947 0.91245 1.16495 0.93991 1.25470 0.92897 1.01394 0.95146 1.70034 1.30311 1.27294 1.24263 0.86079 0.78838 0.80699 0.79627 1.20094 1.18793 1.19250 1.23058 1.06498 0.96235 0.96317 1.22380 0.94032 1.01165 0.99798 1.20770 1.02143 0.80497 0.91123 0.85192 1.23369 0.85109 0.75480 0.83950 1.90685 1.18784 1.58027 1.74508 1.84325 1.45383 1.64421 1.37179 0.93295 0.90147 0.92658 0.89243 0.88744 0.92044 0.87903 0.90811 0.88458 0.87824 0.83440 0.92312 0.88811 0.90880 0.91545 0.90177 0.71153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.80 7.34 71.98 0.53 -3.27 16 2 C -0.09 -1.52 2.80 -10.71 -0.03 -1.55 16 3 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.10 -1.27 5.43 30.62 0.17 -1.10 16 5 C -0.14 -2.46 5.74 30.67 0.18 -2.29 16 6 C 0.11 2.78 6.33 86.36 0.55 3.33 16 7 N -1.00 -31.21 2.66 -494.64 -1.31 -32.53 16 8 S 2.63 118.94 3.85 -56.49 -0.22 118.72 16 9 O -0.99 -47.94 13.85 -117.74 -1.63 -49.57 16 10 O -0.99 -52.49 15.92 -127.65 -2.03 -54.52 16 11 C -0.54 -24.80 4.82 71.98 0.35 -24.45 16 12 C 0.02 1.11 1.75 -52.93 -0.09 1.01 16 13 C -0.56 -33.13 7.02 25.60 0.18 -32.95 16 14 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 15 C 0.06 3.25 5.42 84.65 0.46 3.70 16 16 N -0.88 -51.30 12.56 21.45 0.27 -51.03 16 17 Si 0.92 46.72 29.54 68.60 2.03 48.74 16 18 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 19 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 21 C -0.18 -8.74 9.88 30.59 0.30 -8.44 16 22 C -0.13 -6.66 9.09 30.60 0.28 -6.38 16 23 C 0.16 3.95 3.05 44.23 0.14 4.09 16 24 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 25 C 0.48 14.23 4.41 71.24 0.31 14.54 16 26 O -0.53 -18.81 9.85 29.58 0.29 -18.52 16 27 O -0.50 -12.36 13.42 -49.52 -0.66 -13.03 16 28 H 0.05 1.28 4.33 -2.39 -0.01 1.27 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.42 5.75 -2.38 -0.01 1.40 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 1.27 6.34 -2.39 -0.02 1.26 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 2.23 7.02 -2.39 -0.02 2.21 16 36 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.10 4.82 8.14 -2.39 -0.02 4.80 16 38 H 0.15 6.02 4.02 -2.39 -0.01 6.02 16 39 H 0.27 14.63 8.32 -92.71 -0.77 13.86 16 40 H 0.09 4.05 8.09 -2.39 -0.02 4.03 16 41 H 0.07 3.49 8.14 -2.39 -0.02 3.47 16 42 H 0.07 3.51 8.12 -2.39 -0.02 3.49 16 43 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 44 H 0.43 7.81 9.10 -74.05 -0.67 7.14 16 Total: -1.00 -78.53 346.36 0.39 -78.14 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.35 Total: 27.35 kcal Atomic # 6 Polarization: -57.07 SS G_CDS: 3.31 Total: -53.76 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -1.05 Total: -83.55 kcal Atomic # 8 Polarization: -131.60 SS G_CDS: -4.04 Total: -135.64 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 16 Polarization: 118.94 SS G_CDS: -0.22 Total: 118.72 kcal Total: -78.53 0.39 -78.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424369863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.359 kcal (2) G-P(sol) polarization free energy of solvation -78.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds