Wall clock time and date at job start Tue Mar 31 2020 16:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50708 * 109.46888 * 2 1 4 4 C 1.46196 * 126.96504 * 269.70738 * 3 2 1 5 5 C 1.39736 * 134.17762 * 0.77202 * 4 3 2 6 6 C 1.36624 * 119.70900 * 179.59017 * 5 4 3 7 7 C 1.38836 * 120.44059 * 359.70245 * 6 5 4 8 8 C 1.37824 * 120.74976 * 0.02562 * 7 6 5 9 9 C 1.39001 * 119.85709 * 0.02562 * 8 7 6 10 10 O 1.34730 * 133.22325 * 180.02562 * 9 8 7 11 11 C 1.34945 * 110.86487 * 179.97438 * 10 9 8 12 12 C 1.46808 * 125.14723 * 180.02562 * 11 10 9 13 13 O 1.21704 * 120.00345 * 174.12913 * 12 11 10 14 14 N 1.34779 * 119.99720 * 354.12275 * 12 11 10 15 15 C 1.36784 * 120.00371 * 4.01477 * 14 12 11 16 16 H 1.07998 * 119.99514 * 312.28044 * 15 14 12 17 17 C 1.39071 * 120.00534 * 132.27601 * 15 14 12 18 18 N 1.31356 * 119.99635 * 2.92464 * 17 15 14 19 19 Si 1.86800 * 120.00266 * 182.92503 * 17 15 14 20 20 H 1.48505 * 109.47016 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47184 * 120.00436 * 19 17 15 22 22 H 1.48501 * 109.47070 * 240.00414 * 19 17 15 23 23 C 1.46501 * 119.99975 * 184.00957 * 14 12 11 24 24 C 1.50698 * 109.47323 * 94.11297 * 23 14 12 25 25 O 1.20824 * 119.99986 * 0.02562 * 24 23 14 26 26 O 1.34228 * 120.00338 * 179.97438 * 24 23 14 27 27 C 1.45195 * 116.99927 * 180.02562 * 26 24 23 28 28 H 1.09000 * 109.46844 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46982 * 299.99964 * 1 2 3 30 30 H 1.08998 * 109.46838 * 60.00210 * 1 2 3 31 31 H 1.08994 * 109.47429 * 240.00312 * 2 1 3 32 32 H 1.08998 * 109.46838 * 119.99790 * 2 1 3 33 33 H 1.07994 * 120.14462 * 359.29035 * 5 4 3 34 34 H 1.07999 * 119.77963 * 179.72105 * 6 5 4 35 35 H 1.08002 * 119.62432 * 180.02562 * 7 6 5 36 36 H 1.07996 * 120.07052 * 180.02562 * 8 7 6 37 37 H 0.97001 * 119.99719 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.47219 * 214.11460 * 23 14 12 39 39 H 1.09003 * 109.47108 * 334.11393 * 23 14 12 40 40 H 1.09002 * 109.47435 * 300.00040 * 27 26 24 41 41 H 1.09000 * 109.47381 * 60.00572 * 27 26 24 42 42 H 1.09010 * 109.46933 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3310 2.2478 -1.1681 5 6 2.2532 2.0471 -2.5488 6 6 2.6097 3.0542 -3.4005 7 6 3.0423 4.2760 -2.9030 8 6 3.1208 4.4960 -1.5447 9 6 2.7644 3.4861 -0.6585 10 8 2.7364 3.4060 0.6861 11 6 2.3069 2.1910 1.0864 12 6 2.1564 1.7658 2.4834 13 8 1.6599 0.6847 2.7404 14 7 2.5680 2.5726 3.4815 15 6 3.0501 3.8207 3.1973 16 1 3.7859 3.9506 2.4175 17 6 2.5929 4.9223 3.9124 18 7 1.7413 4.7576 4.8989 19 14 3.1897 6.6363 3.4702 20 1 4.1372 6.5516 2.3298 21 1 2.0298 7.4810 3.0877 22 1 3.8761 7.2389 4.6410 23 6 2.4990 2.1129 4.8708 24 6 3.8233 1.5131 5.2678 25 8 4.7317 1.4741 4.4721 26 8 3.9940 1.0231 6.5058 27 6 5.2957 0.4612 6.8185 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9174 1.0986 -2.9409 34 1 2.5543 2.8988 -4.4678 35 1 3.3205 5.0631 -3.5883 36 1 3.4584 5.4508 -1.1698 37 1 1.4226 5.5259 5.3979 38 1 2.2727 2.9571 5.5220 39 1 1.7162 1.3604 4.9660 40 1 5.5049 -0.3688 6.1436 41 1 6.0609 1.2282 6.6991 42 1 5.2986 0.1017 7.8477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449963317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:15 Heat of formation + Delta-G solvation = -85.350092 kcal Electronic energy + Delta-G solvation = -29083.393075 eV Core-core repulsion = 24995.568489 eV Total energy + Delta-G solvation = -4087.824586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.92166 -39.81202 -38.49651 -37.37977 -35.90217 -35.10901 -34.09341 -31.76906 -30.79898 -30.00136 -29.32313 -28.27165 -26.52717 -25.09310 -23.51493 -23.01303 -22.20577 -20.77529 -19.71529 -19.35797 -18.11986 -17.01957 -16.93973 -16.39450 -15.89636 -15.70866 -15.62484 -15.27092 -14.89415 -14.64152 -14.13834 -13.95407 -13.66564 -13.59490 -13.19648 -13.08584 -12.82521 -12.67820 -12.45709 -12.06363 -11.87631 -11.77508 -11.72076 -11.47664 -11.32155 -11.23524 -10.96883 -10.74538 -10.72363 -10.44738 -10.36251 -10.25623 -9.75288 -9.50935 -9.32841 -9.00299 -8.27538 -7.90492 -7.57580 -6.55388 -4.40014 1.06521 1.67494 2.36995 3.03728 3.06587 3.13269 3.15786 3.23391 3.32773 3.94448 3.98874 4.16828 4.38991 4.85772 4.91911 5.05609 5.11634 5.29972 5.42923 5.43671 5.50128 5.60616 5.63730 5.67163 5.72100 5.85805 5.89255 5.92392 5.99679 6.17955 6.25479 6.29840 6.47134 6.57800 6.62234 6.67295 6.74942 6.80491 6.88007 6.95091 7.00009 7.38964 7.55545 7.66976 8.19449 8.54551 8.82869 9.06852 9.51039 10.45004 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.005128 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.636682 B = 5459.268959 C = 7014.488837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C -0.134 4.134 4 C -0.129 4.129 5 C -0.069 4.069 6 C -0.147 4.147 7 C -0.102 4.102 8 C -0.107 4.107 9 C 0.051 3.949 10 O -0.142 6.142 11 C 0.041 3.959 12 C 0.554 3.446 13 O -0.569 6.569 14 N -0.407 5.407 15 C -0.323 4.323 16 H 0.102 0.898 17 C 0.049 3.951 18 N -0.872 5.872 19 Si 0.926 3.074 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.278 1.278 23 C 0.108 3.892 24 C 0.447 3.553 25 O -0.507 6.507 26 O -0.367 6.367 27 C 0.037 3.963 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.276 0.724 38 H 0.164 0.836 39 H 0.104 0.896 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.175 -2.683 -6.845 7.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.087 4.087 6 C -0.165 4.165 7 C -0.120 4.120 8 C -0.125 4.125 9 C 0.001 3.999 10 O -0.041 6.041 11 C -0.010 4.010 12 C 0.343 3.657 13 O -0.454 6.454 14 N -0.124 5.124 15 C -0.450 4.450 16 H 0.120 0.880 17 C -0.157 4.157 18 N -0.509 5.509 19 Si 0.752 3.248 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.204 1.204 23 C -0.016 4.016 24 C 0.289 3.711 25 O -0.393 6.393 26 O -0.284 6.284 27 C -0.058 4.058 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.087 0.913 38 H 0.181 0.819 39 H 0.122 0.878 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.221 -2.879 -6.557 7.264 hybrid contribution 0.638 0.907 -0.187 1.125 sum 1.858 -1.972 -6.744 7.268 Atomic orbital electron populations 1.21626 0.94943 1.01026 1.01842 1.19961 0.95881 0.90105 1.02745 1.21163 1.05515 0.97649 0.89425 1.19809 1.04930 0.94169 0.94053 1.20244 0.98748 0.99143 0.90571 1.20632 1.02770 0.93725 0.99392 1.20836 0.99988 0.97501 0.93694 1.19968 1.03644 0.97693 0.91225 1.20047 1.00736 0.95851 0.83239 1.84711 1.68607 1.32384 1.18441 1.21971 1.01023 0.83196 0.94822 1.17115 0.81073 0.85281 0.82246 1.90702 1.48881 1.23430 1.82412 1.42900 1.53191 1.13586 1.02716 1.19713 1.23412 0.80979 1.20937 0.88027 1.25617 0.94292 1.00520 0.95268 1.69408 1.29982 1.32045 1.19453 0.85846 0.78911 0.81012 0.79038 1.18714 1.20113 1.20385 1.21475 0.89637 1.02649 0.87852 1.25218 0.92521 0.74287 0.79052 1.90588 1.43757 1.53177 1.51766 1.86545 1.36175 1.71277 1.34408 1.23092 0.83442 0.98245 1.01006 0.92859 0.92002 0.93547 0.92055 0.89087 0.86023 0.85933 0.85366 0.85239 0.91262 0.81912 0.87783 0.92578 0.92458 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.90 37.16 0.37 -1.80 16 2 C -0.05 -0.87 5.81 -27.88 -0.16 -1.03 16 3 C -0.13 -2.69 5.65 -102.24 -0.58 -3.27 16 4 C -0.13 -2.36 6.37 -105.19 -0.67 -3.03 16 5 C -0.07 -1.01 10.06 -39.61 -0.40 -1.41 16 6 C -0.15 -1.86 9.98 -39.94 -0.40 -2.26 16 7 C -0.10 -1.32 10.01 -39.51 -0.40 -1.72 16 8 C -0.11 -1.70 10.07 -39.45 -0.40 -2.10 16 9 C 0.05 0.99 7.40 -38.35 -0.28 0.71 16 10 O -0.14 -3.25 7.49 2.74 0.02 -3.23 16 11 C 0.04 0.94 6.78 -36.93 -0.25 0.69 16 12 C 0.55 13.85 7.60 -12.79 -0.10 13.75 16 13 O -0.57 -14.25 14.19 5.19 0.07 -14.18 16 14 N -0.41 -10.37 2.02 -117.55 -0.24 -10.61 16 15 C -0.32 -8.35 7.57 -15.03 -0.11 -8.47 16 16 H 0.10 2.70 6.26 -52.49 -0.33 2.37 16 17 C 0.05 1.21 5.39 -17.45 -0.09 1.11 16 18 N -0.87 -21.82 10.88 55.50 0.60 -21.22 16 19 Si 0.93 19.67 29.55 -169.99 -5.02 14.64 16 20 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 C 0.11 2.54 5.72 -5.19 -0.03 2.51 16 24 C 0.45 10.13 8.00 36.00 0.29 10.42 16 25 O -0.51 -12.72 16.11 -18.75 -0.30 -13.02 16 26 O -0.37 -7.06 10.57 -39.25 -0.41 -7.47 16 27 C 0.04 0.54 10.55 101.05 1.07 1.61 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.76 6.52 -51.93 -0.34 1.42 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.28 6.48 8.31 -40.82 -0.34 6.14 16 38 H 0.16 3.93 5.32 -51.93 -0.28 3.65 16 39 H 0.10 2.33 7.25 -51.93 -0.38 1.95 16 40 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 41 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 42 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -30.03 361.86 -7.08 -37.10 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.10 Total: 6.81 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -2.15 Total: 5.72 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.37 Total: -31.83 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.62 Total: -37.90 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.03 -7.08 -37.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449963317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.246 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds