Wall clock time and date at job start Tue Mar 31 2020 16:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 117.00141 * 2 1 4 4 O 1.20820 * 120.00512 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00027 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.87926 * 203.98979 * 5 3 2 7 7 C 1.54328 * 109.88403 * 82.80983 * 5 3 2 8 8 C 1.55155 * 102.94462 * 218.39316 * 7 5 3 9 9 C 1.54905 * 101.58167 * 35.50069 * 8 7 5 10 10 N 1.47026 * 109.88287 * 325.00533 * 5 3 2 11 11 S 1.65597 * 125.64584 * 298.39163 * 10 5 3 12 12 O 1.42104 * 104.27899 * 206.07069 * 11 10 5 13 13 O 1.42094 * 104.27967 * 333.92768 * 11 10 5 14 14 C 1.81404 * 104.44980 * 90.00304 * 11 10 5 15 15 C 1.53003 * 109.47306 * 172.63517 * 14 11 10 16 16 C 1.50698 * 115.54911 * 65.37934 * 15 14 11 17 17 H 1.08009 * 119.99701 * 273.03723 * 16 15 14 18 18 C 1.37872 * 120.00330 * 93.04159 * 16 15 14 19 19 N 1.31518 * 120.00506 * 173.69314 * 18 16 15 20 20 Si 1.86800 * 119.99748 * 353.69435 * 18 16 15 21 21 H 1.48504 * 109.46984 * 94.35950 * 20 18 16 22 22 H 1.48501 * 109.47048 * 214.35389 * 20 18 16 23 23 H 1.48498 * 109.47368 * 334.35923 * 20 18 16 24 24 C 1.53000 * 117.49651 * 279.71147 * 15 14 11 25 25 C 1.52992 * 117.49596 * 211.05010 * 15 14 11 26 26 H 1.09004 * 109.47368 * 59.99519 * 1 2 3 27 27 H 1.09005 * 109.47107 * 299.99802 * 1 2 3 28 28 H 1.08998 * 109.47444 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47463 * 60.69541 * 6 5 3 30 30 H 1.08994 * 109.47827 * 180.69971 * 6 5 3 31 31 H 1.09003 * 109.47122 * 300.70077 * 6 5 3 32 32 H 1.09002 * 110.71672 * 336.75752 * 7 5 3 33 33 H 1.08997 * 110.71797 * 100.02751 * 7 5 3 34 34 H 1.08997 * 111.00160 * 277.42496 * 8 7 5 35 35 H 1.09000 * 111.03148 * 153.58961 * 8 7 5 36 36 H 1.09003 * 110.36556 * 204.15155 * 9 8 7 37 37 H 1.09002 * 110.45806 * 81.87622 * 9 8 7 38 38 H 1.09005 * 109.46597 * 292.62986 * 14 11 10 39 39 H 1.08998 * 109.47337 * 52.63246 * 14 11 10 40 40 H 0.96992 * 120.00345 * 180.02562 * 19 18 16 41 41 H 1.08997 * 117.49886 * 359.97438 * 24 15 14 42 42 H 1.08994 * 117.49858 * 145.02229 * 24 15 14 43 43 H 1.09009 * 117.49804 * 214.97412 * 25 15 14 44 44 H 1.09002 * 117.50549 * 359.97343 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0173 2.6145 0.5845 7 6 4.0994 1.1211 -1.4407 8 6 5.3788 0.2646 -1.2482 9 6 4.9545 -0.6721 -0.0897 10 7 4.1253 0.1697 0.7919 11 16 3.8655 -0.0874 2.4070 12 8 5.0120 -0.8092 2.8359 13 8 3.5763 1.2036 2.9254 14 6 2.3907 -1.1421 2.4660 15 6 2.1513 -1.6041 3.9048 16 6 1.8028 -0.5160 4.8874 17 1 2.5879 0.0272 5.3926 18 6 0.4818 -0.2137 5.1416 19 7 0.1742 0.6469 6.0873 20 14 -0.8712 -1.0269 4.1428 21 1 -1.3625 -2.2297 4.8618 22 1 -1.9914 -0.0701 3.9557 23 1 -0.3353 -1.4272 2.8170 24 6 2.9873 -2.7782 4.4181 25 6 1.5011 -2.9741 4.1079 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.6633 2.7000 1.6118 30 1 5.1058 2.6697 0.5695 31 1 3.6041 3.4286 -0.0111 32 1 3.3758 0.5982 -2.0660 33 1 4.3468 2.0937 -1.8661 34 1 6.2253 0.8868 -0.9576 35 1 5.6067 -0.3059 -2.1485 36 1 5.8320 -1.0336 0.4465 37 1 4.3720 -1.5105 -0.4715 38 1 1.5261 -0.5774 2.1172 39 1 2.5396 -2.0112 1.8254 40 1 -0.7551 0.8592 6.2663 41 1 3.7075 -3.2218 3.7307 42 1 3.2848 -2.7638 5.4666 43 1 0.8216 -3.0885 4.9525 44 1 1.2435 -3.5461 3.2165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451412714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:48 Heat of formation + Delta-G solvation = -115.037520 kcal Electronic energy + Delta-G solvation = -29653.637706 eV Core-core repulsion = 25699.969728 eV Total energy + Delta-G solvation = -3953.667978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.86490 -38.51360 -37.16217 -36.53505 -36.42117 -35.26747 -32.17988 -31.50672 -31.11960 -28.49769 -27.96416 -25.90952 -25.53787 -23.42548 -21.88576 -21.73376 -20.60997 -19.42395 -18.75394 -17.71484 -17.12591 -16.71691 -16.42034 -15.98016 -15.77111 -15.22651 -15.11315 -14.66123 -14.12282 -13.91091 -13.65228 -13.50880 -13.27448 -12.99947 -12.80357 -12.68617 -12.52956 -12.23893 -12.14061 -12.09243 -11.71688 -11.48943 -11.41502 -11.35243 -11.28819 -11.07021 -11.05283 -10.79327 -10.61861 -10.56796 -10.39445 -10.33477 -10.16006 -9.74856 -9.16217 -9.09262 -8.67679 -8.45302 -6.19275 -4.26335 0.77778 2.10012 2.64750 3.11917 3.17950 3.27118 3.30767 4.20660 4.28962 4.32462 4.36008 4.56785 4.74794 4.82990 4.85920 4.97318 5.04114 5.14832 5.24231 5.26632 5.31951 5.47620 5.55244 5.56106 5.59823 5.62123 5.69696 5.78323 5.89583 5.94258 5.96666 6.01611 6.11258 6.21539 6.36334 6.40211 6.43290 6.60180 6.65966 6.87195 7.04832 7.57863 7.72318 8.34209 8.85770 9.41848 10.92229 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.006528 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.855051 B = 4288.390118 C = 4968.992905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.444 3.556 4 O -0.487 6.487 5 C 0.198 3.802 6 C -0.172 4.172 7 C -0.115 4.115 8 C -0.124 4.124 9 C 0.112 3.888 10 N -1.006 6.006 11 S 2.616 3.384 12 O -0.957 6.957 13 O -0.932 6.932 14 C -0.565 4.565 15 C 0.001 3.999 16 C -0.511 4.511 17 H 0.087 0.913 18 C 0.088 3.912 19 N -0.881 5.881 20 Si 0.871 3.129 21 H -0.276 1.276 22 H -0.291 1.291 23 H -0.255 1.255 24 C -0.177 4.177 25 C -0.184 4.184 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.267 0.733 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 -3.306 -18.305 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.284 3.716 4 O -0.372 6.372 5 C 0.107 3.893 6 C -0.230 4.230 7 C -0.154 4.154 8 C -0.163 4.163 9 C -0.013 4.013 10 N -0.842 5.842 11 S 2.715 3.285 12 O -0.948 6.948 13 O -0.923 6.923 14 C -0.698 4.698 15 C -0.002 4.002 16 C -0.548 4.548 17 H 0.105 0.895 18 C -0.116 4.116 19 N -0.516 5.516 20 Si 0.698 3.302 21 H -0.201 1.201 22 H -0.217 1.217 23 H -0.179 1.179 24 C -0.215 4.215 25 C -0.223 4.223 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.303 -2.542 -17.413 18.692 hybrid contribution -1.850 -0.748 -0.791 2.146 sum 4.453 -3.290 -18.204 19.027 Atomic orbital electron populations 1.23400 0.76280 1.04076 1.02860 1.86562 1.23496 1.33108 1.83600 1.24405 0.92285 0.81877 0.73047 1.90669 1.66591 1.36248 1.43678 1.20591 0.84209 0.90045 0.94420 1.22507 1.02232 0.92830 1.05442 1.22723 0.98012 1.02174 0.92465 1.22767 0.97152 0.97860 0.98473 1.22079 0.94792 0.93320 0.91110 1.59308 1.61639 1.35603 1.27696 1.05048 0.76836 0.76096 0.70476 1.93506 1.47262 1.75530 1.78506 1.93534 1.86140 1.37237 1.75344 1.30293 1.19720 1.14046 1.05695 1.18895 1.02484 0.89593 0.89246 1.20347 0.94065 1.17284 1.23082 0.89523 1.24955 0.98443 0.94197 0.94043 1.69891 1.18852 1.33314 1.29555 0.86967 0.81645 0.79200 0.82363 1.20142 1.21745 1.17890 1.23055 0.92580 1.03747 1.02082 1.22958 0.96284 1.00921 1.02112 0.91732 0.91317 0.87887 0.87477 0.90620 0.90483 0.90045 0.88912 0.90025 0.89468 0.89265 0.91232 0.85536 0.87295 0.92276 0.90019 0.88584 0.88945 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.10 101.05 1.02 1.40 16 2 O -0.35 -5.41 7.76 -39.24 -0.30 -5.71 16 3 C 0.44 7.33 6.38 36.01 0.23 7.56 16 4 O -0.49 -9.11 15.85 -18.75 -0.30 -9.41 16 5 C 0.20 2.81 0.85 -131.99 -0.11 2.70 16 6 C -0.17 -2.54 7.81 37.15 0.29 -2.25 16 7 C -0.11 -1.09 6.01 -24.90 -0.15 -1.23 16 8 C -0.12 -0.99 7.08 -24.59 -0.17 -1.17 16 9 C 0.11 1.23 7.07 -2.53 -0.02 1.22 16 10 N -1.01 -15.34 2.82 -98.87 -0.28 -15.62 16 11 S 2.62 53.20 5.08 -107.50 -0.55 52.65 16 12 O -0.96 -20.49 17.28 -57.54 -0.99 -21.48 16 13 O -0.93 -22.26 14.59 -57.54 -0.84 -23.09 16 14 C -0.57 -11.45 4.87 37.16 0.18 -11.27 16 15 C 0.00 0.02 0.80 -155.66 -0.12 -0.11 16 16 C -0.51 -14.43 8.86 -34.44 -0.31 -14.73 16 17 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 18 C 0.09 2.54 5.46 -17.82 -0.10 2.44 16 19 N -0.88 -26.93 13.96 55.43 0.77 -26.15 16 20 Si 0.87 21.00 24.76 -169.99 -4.21 16.79 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.25 -5.54 5.92 56.52 0.33 -5.21 16 24 C -0.18 -3.67 9.96 -26.69 -0.27 -3.94 16 25 C -0.18 -3.82 7.46 -26.70 -0.20 -4.02 16 26 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.11 2.00 5.49 -51.93 -0.28 1.72 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 32 H 0.08 0.70 7.84 -51.93 -0.41 0.29 16 33 H 0.09 0.71 7.83 -51.93 -0.41 0.31 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.98 7.67 -51.93 -0.40 0.59 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.13 2.63 4.87 -51.92 -0.25 2.38 16 39 H 0.11 1.80 8.09 -51.93 -0.42 1.38 16 40 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.10 2.01 8.14 -51.93 -0.42 1.58 16 43 H 0.09 2.00 6.94 -51.92 -0.36 1.64 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 359.31 15.07 5.41 5.41 Total: -1.00 -35.32 359.31 -7.80 -43.12 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.79 Total: 6.89 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 0.27 Total: -23.39 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.50 Total: -41.77 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -2.44 Total: -59.70 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.21 Total: 16.79 kcal Atomic # 16 Polarization: 53.20 SS G_CDS: -0.55 Total: 52.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.32 -7.80 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451412714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.922 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds