Wall clock time and date at job start Tue Mar 31 2020 16:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 117.00141 * 2 1 4 4 O 1.20820 * 120.00512 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00027 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.87926 * 203.98979 * 5 3 2 7 7 C 1.54328 * 109.88403 * 82.80983 * 5 3 2 8 8 C 1.55155 * 102.94462 * 218.39316 * 7 5 3 9 9 C 1.54905 * 101.58167 * 35.50069 * 8 7 5 10 10 N 1.47026 * 109.88287 * 325.00533 * 5 3 2 11 11 S 1.65597 * 125.64584 * 298.39163 * 10 5 3 12 12 O 1.42104 * 104.27899 * 206.07069 * 11 10 5 13 13 O 1.42094 * 104.27967 * 333.92768 * 11 10 5 14 14 C 1.81404 * 104.44980 * 90.00304 * 11 10 5 15 15 C 1.53003 * 109.47306 * 172.63517 * 14 11 10 16 16 C 1.50698 * 115.54911 * 65.37934 * 15 14 11 17 17 H 1.08009 * 119.99701 * 273.03723 * 16 15 14 18 18 C 1.37872 * 120.00330 * 93.04159 * 16 15 14 19 19 N 1.31518 * 120.00506 * 173.69314 * 18 16 15 20 20 Si 1.86800 * 119.99748 * 353.69435 * 18 16 15 21 21 H 1.48504 * 109.46984 * 94.35950 * 20 18 16 22 22 H 1.48501 * 109.47048 * 214.35389 * 20 18 16 23 23 H 1.48498 * 109.47368 * 334.35923 * 20 18 16 24 24 C 1.53000 * 117.49651 * 279.71147 * 15 14 11 25 25 C 1.52992 * 117.49596 * 211.05010 * 15 14 11 26 26 H 1.09004 * 109.47368 * 59.99519 * 1 2 3 27 27 H 1.09005 * 109.47107 * 299.99802 * 1 2 3 28 28 H 1.08998 * 109.47444 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47463 * 60.69541 * 6 5 3 30 30 H 1.08994 * 109.47827 * 180.69971 * 6 5 3 31 31 H 1.09003 * 109.47122 * 300.70077 * 6 5 3 32 32 H 1.09002 * 110.71672 * 336.75752 * 7 5 3 33 33 H 1.08997 * 110.71797 * 100.02751 * 7 5 3 34 34 H 1.08997 * 111.00160 * 277.42496 * 8 7 5 35 35 H 1.09000 * 111.03148 * 153.58961 * 8 7 5 36 36 H 1.09003 * 110.36556 * 204.15155 * 9 8 7 37 37 H 1.09002 * 110.45806 * 81.87622 * 9 8 7 38 38 H 1.09005 * 109.46597 * 292.62986 * 14 11 10 39 39 H 1.08998 * 109.47337 * 52.63246 * 14 11 10 40 40 H 0.96992 * 120.00345 * 180.02562 * 19 18 16 41 41 H 1.08997 * 117.49886 * 359.97438 * 24 15 14 42 42 H 1.08994 * 117.49858 * 145.02229 * 24 15 14 43 43 H 1.09009 * 117.49804 * 214.97412 * 25 15 14 44 44 H 1.09002 * 117.50549 * 359.97343 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0173 2.6145 0.5845 7 6 4.0994 1.1211 -1.4407 8 6 5.3788 0.2646 -1.2482 9 6 4.9545 -0.6721 -0.0897 10 7 4.1253 0.1697 0.7919 11 16 3.8655 -0.0874 2.4070 12 8 5.0120 -0.8092 2.8359 13 8 3.5763 1.2036 2.9254 14 6 2.3907 -1.1421 2.4660 15 6 2.1513 -1.6041 3.9048 16 6 1.8028 -0.5160 4.8874 17 1 2.5879 0.0272 5.3926 18 6 0.4818 -0.2137 5.1416 19 7 0.1742 0.6469 6.0873 20 14 -0.8712 -1.0269 4.1428 21 1 -1.3625 -2.2297 4.8618 22 1 -1.9914 -0.0701 3.9557 23 1 -0.3353 -1.4272 2.8170 24 6 2.9873 -2.7782 4.4181 25 6 1.5011 -2.9741 4.1079 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.6633 2.7000 1.6118 30 1 5.1058 2.6697 0.5695 31 1 3.6041 3.4286 -0.0111 32 1 3.3758 0.5982 -2.0660 33 1 4.3468 2.0937 -1.8661 34 1 6.2253 0.8868 -0.9576 35 1 5.6067 -0.3059 -2.1485 36 1 5.8320 -1.0336 0.4465 37 1 4.3720 -1.5105 -0.4715 38 1 1.5261 -0.5774 2.1172 39 1 2.5396 -2.0112 1.8254 40 1 -0.7551 0.8592 6.2663 41 1 3.7075 -3.2218 3.7307 42 1 3.2848 -2.7638 5.4666 43 1 0.8216 -3.0885 4.9525 44 1 1.2435 -3.5461 3.2165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451412714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:47 Heat of formation + Delta-G solvation = -141.490310 kcal Electronic energy + Delta-G solvation = -29654.784785 eV Core-core repulsion = 25699.969728 eV Total energy + Delta-G solvation = -3954.815057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.03411 -39.53944 -38.88993 -38.14381 -37.70471 -36.92855 -34.34678 -32.52130 -32.06008 -30.11582 -29.05470 -27.68052 -26.87277 -24.50073 -23.42071 -22.70281 -21.80875 -21.14006 -20.13520 -19.17175 -18.66143 -18.26967 -17.67582 -17.26325 -17.04228 -16.85818 -16.63918 -16.18324 -15.63776 -15.04173 -14.94675 -14.86099 -14.65533 -14.45581 -14.28850 -13.85984 -13.74217 -13.69837 -13.30264 -13.24069 -13.10056 -13.06352 -12.94482 -12.80073 -12.69632 -12.45343 -12.36426 -12.05983 -11.99621 -11.90856 -11.80481 -11.73331 -11.58041 -11.48842 -10.99753 -10.77168 -10.44480 -9.99886 -8.38465 -6.51179 -0.75039 0.87340 1.26811 1.29303 1.43538 1.53417 1.77512 2.29472 2.80761 2.92916 3.08120 3.11842 3.35574 3.47940 3.65706 3.78411 3.90166 4.08965 4.18338 4.20820 4.24969 4.29258 4.33065 4.41782 4.51873 4.56947 4.63170 4.74576 4.80613 4.81903 4.82610 4.94123 4.99584 5.03430 5.15533 5.16394 5.20319 5.30897 5.36583 5.42228 5.46538 5.57056 6.12761 6.50882 6.59809 7.21026 8.77847 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.006528 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.855051 B = 4288.390118 C = 4968.992905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.348 6.348 3 C 0.439 3.561 4 O -0.521 6.521 5 C 0.190 3.810 6 C -0.176 4.176 7 C -0.107 4.107 8 C -0.111 4.111 9 C 0.096 3.904 10 N -1.001 6.001 11 S 2.617 3.383 12 O -0.977 6.977 13 O -0.986 6.986 14 C -0.561 4.561 15 C -0.035 4.035 16 C -0.515 4.515 17 H 0.027 0.973 18 C 0.023 3.977 19 N -0.941 5.941 20 Si 0.929 3.071 21 H -0.258 1.258 22 H -0.297 1.297 23 H -0.211 1.211 24 C -0.172 4.172 25 C -0.166 4.166 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.136 0.864 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.158 0.842 40 H 0.268 0.732 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.382 -6.506 -22.966 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.264 6.264 3 C 0.280 3.720 4 O -0.408 6.408 5 C 0.100 3.900 6 C -0.234 4.234 7 C -0.145 4.145 8 C -0.150 4.150 9 C -0.028 4.028 10 N -0.840 5.840 11 S 2.718 3.282 12 O -0.968 6.968 13 O -0.976 6.976 14 C -0.693 4.693 15 C -0.037 4.037 16 C -0.552 4.552 17 H 0.045 0.955 18 C -0.176 4.176 19 N -0.579 5.579 20 Si 0.751 3.249 21 H -0.183 1.183 22 H -0.224 1.224 23 H -0.133 1.133 24 C -0.209 4.209 25 C -0.204 4.204 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.154 0.846 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.144 0.856 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.176 0.824 40 H 0.077 0.923 41 H 0.133 0.867 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.569 -5.782 -22.074 23.746 hybrid contribution -1.811 0.304 0.718 1.971 sum 4.759 -5.477 -21.356 22.555 Atomic orbital electron populations 1.23671 0.75503 1.06064 1.02451 1.86544 1.24341 1.32357 1.83174 1.24968 0.93251 0.81766 0.72012 1.90651 1.67462 1.37328 1.45405 1.20916 0.82979 0.88921 0.97210 1.22505 1.03576 0.94370 1.02927 1.22836 0.98790 1.04019 0.88877 1.22827 0.96295 0.97252 0.98599 1.22567 0.94564 0.94280 0.91343 1.58846 1.62059 1.36706 1.26435 1.04587 0.76729 0.75170 0.71741 1.93466 1.47881 1.75580 1.79868 1.93497 1.86699 1.39735 1.77661 1.30151 1.19187 1.15770 1.04240 1.18782 1.05949 0.89214 0.89775 1.20475 0.92754 1.18248 1.23730 0.95500 1.26004 1.01517 0.94950 0.95161 1.70072 1.19447 1.36126 1.32273 0.86035 0.77661 0.78427 0.82728 1.18317 1.22447 1.13272 1.23133 0.93830 1.01877 1.02050 1.23087 0.95656 0.98331 1.03363 0.89834 0.94229 0.84636 0.92136 0.88529 0.89252 0.88383 0.86862 0.89604 0.85592 0.89569 0.88611 0.86117 0.82446 0.92321 0.86712 0.90158 0.90224 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.10 113.37 1.15 1.55 16 2 O -0.35 -9.73 7.76 -51.33 -0.40 -10.13 16 3 C 0.44 13.91 6.38 71.24 0.45 14.37 16 4 O -0.52 -19.56 15.85 21.98 0.35 -19.21 16 5 C 0.19 5.05 0.85 3.21 0.00 5.05 16 6 C -0.18 -5.20 7.81 71.98 0.56 -4.64 16 7 C -0.11 -1.55 6.01 31.78 0.19 -1.36 16 8 C -0.11 -1.22 7.08 31.98 0.23 -0.99 16 9 C 0.10 1.72 7.07 86.85 0.61 2.33 16 10 N -1.00 -28.53 2.82 -466.73 -1.31 -29.84 16 11 S 2.62 106.56 5.08 -56.49 -0.29 106.27 16 12 O -0.98 -41.67 17.28 -127.65 -2.21 -43.88 16 13 O -0.99 -50.13 14.59 -127.65 -1.86 -51.99 16 14 C -0.56 -21.46 4.87 71.98 0.35 -21.11 16 15 C -0.03 -1.57 0.80 -52.93 -0.04 -1.61 16 16 C -0.51 -30.48 8.86 25.60 0.23 -30.25 16 17 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 18 C 0.02 1.35 5.46 84.65 0.46 1.81 16 19 N -0.94 -61.20 13.96 21.45 0.30 -60.90 16 20 Si 0.93 42.93 24.76 68.60 1.70 44.63 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.21 -8.14 5.92 99.48 0.59 -7.55 16 24 C -0.17 -6.77 9.96 30.62 0.30 -6.47 16 25 C -0.17 -6.28 7.46 30.62 0.23 -6.05 16 26 H 0.08 1.73 8.13 -2.38 -0.02 1.71 16 27 H 0.04 1.21 8.13 -2.38 -0.02 1.19 16 28 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.06 2.41 5.49 -2.39 -0.01 2.40 16 30 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.09 2.33 7.87 -2.39 -0.02 2.31 16 32 H 0.10 1.16 7.84 -2.39 -0.02 1.14 16 33 H 0.11 1.23 7.83 -2.39 -0.02 1.21 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.09 1.62 7.67 -2.39 -0.02 1.60 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.12 4.79 4.87 -2.39 -0.01 4.77 16 39 H 0.16 4.36 8.09 -2.39 -0.02 4.34 16 40 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 41 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 42 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 43 H 0.08 3.23 6.94 -2.38 -0.02 3.22 16 44 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 Total: -1.00 -86.48 359.31 1.89 -84.60 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.88 Total: 27.83 kcal Atomic # 6 Polarization: -52.10 SS G_CDS: 4.73 Total: -47.37 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -1.01 Total: -90.74 kcal Atomic # 8 Polarization: -121.10 SS G_CDS: -4.12 Total: -125.22 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.70 Total: 44.63 kcal Atomic # 16 Polarization: 106.56 SS G_CDS: -0.29 Total: 106.27 kcal Total: -86.48 1.89 -84.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451412714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.893 kcal (2) G-P(sol) polarization free energy of solvation -86.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds