Wall clock time and date at job start Tue Mar 31 2020 17:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34229 * 116.99828 * 2 1 4 4 O 1.20825 * 120.00229 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99589 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.64724 * 303.14362 * 5 3 2 7 7 C 1.55158 * 110.71714 * 66.48196 * 5 3 2 8 8 C 1.54916 * 101.58087 * 153.86100 * 7 5 3 9 9 N 1.47425 * 104.83272 * 322.98885 * 8 7 5 10 10 S 1.65592 * 125.64636 * 204.14756 * 9 8 7 11 11 O 1.42095 * 104.27986 * 26.04981 * 10 9 8 12 12 O 1.42107 * 104.27674 * 153.90414 * 10 9 8 13 13 C 1.81403 * 104.45039 * 269.97667 * 10 9 8 14 14 C 1.53007 * 109.46983 * 173.52058 * 13 10 9 15 15 C 1.50704 * 115.55048 * 65.18553 * 14 13 10 16 16 H 1.07999 * 119.99606 * 264.78823 * 15 14 13 17 17 C 1.37877 * 119.99988 * 84.77986 * 15 14 13 18 18 N 1.31515 * 119.99785 * 352.26125 * 17 15 14 19 19 Si 1.86800 * 119.99962 * 172.25471 * 17 15 14 20 20 H 1.48499 * 109.47123 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47162 * 120.00767 * 19 17 15 22 22 H 1.48504 * 109.47038 * 240.00378 * 19 17 15 23 23 C 1.52996 * 117.49676 * 279.51750 * 14 13 10 24 24 C 1.52997 * 117.49530 * 210.85430 * 14 13 10 25 25 C 1.47017 * 108.70024 * 24.12778 * 9 8 7 26 26 H 1.09001 * 110.01278 * 239.44802 * 25 9 8 27 27 C 1.53002 * 109.88229 * 118.36039 * 25 9 8 28 28 H 1.09003 * 109.47016 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46957 * 299.99898 * 1 2 3 30 30 H 1.09000 * 109.46950 * 59.99951 * 1 2 3 31 31 H 1.09002 * 111.00721 * 271.93392 * 7 5 3 32 32 H 1.09004 * 111.00714 * 35.74861 * 7 5 3 33 33 H 1.08997 * 110.36427 * 81.82933 * 8 7 5 34 34 H 1.09004 * 110.36758 * 204.03720 * 8 7 5 35 35 H 1.08998 * 109.46914 * 293.51386 * 13 10 9 36 36 H 1.08992 * 109.46972 * 53.52243 * 13 10 9 37 37 H 0.97001 * 119.99826 * 185.01112 * 18 17 15 38 38 H 1.09001 * 117.50186 * 359.97438 * 23 14 13 39 39 H 1.08995 * 117.50038 * 145.02604 * 23 14 13 40 40 H 1.09007 * 117.49619 * 214.97869 * 24 14 13 41 41 H 1.08995 * 117.49944 * 0.02562 * 24 14 13 42 42 H 1.09007 * 109.47086 * 302.19021 * 27 25 9 43 43 H 1.08998 * 109.47381 * 62.18609 * 27 25 9 44 44 H 1.08998 * 109.47139 * 182.19450 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9790 0.7382 0.8549 7 6 4.1453 0.7249 -1.3298 8 6 5.4917 1.4857 -1.4210 9 7 5.2020 2.8305 -0.8911 10 16 6.0491 4.2093 -1.2424 11 8 6.6148 3.9569 -2.5212 12 8 5.1082 5.2570 -1.0514 13 6 7.3455 4.2792 0.0246 14 6 8.3024 5.4316 -0.2879 15 6 7.7037 6.8125 -0.2116 16 1 7.3317 7.2898 -1.1061 17 6 7.6308 7.4663 1.0001 18 7 7.9409 6.8316 2.1094 19 14 7.0917 9.2536 1.0660 20 1 6.8005 9.7338 -0.3087 21 1 5.8690 9.3714 1.9005 22 1 8.1766 10.0763 1.6588 23 6 9.3816 5.1868 -1.3444 24 6 9.7638 5.2708 0.1355 25 6 4.0361 2.7448 0.0004 26 1 3.2374 3.3892 -0.3670 27 6 4.4326 3.1645 1.4173 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.3079 -0.3512 -1.2699 32 1 3.4975 0.9739 -2.1703 33 1 6.2482 0.9923 -0.8107 34 1 5.8229 1.5477 -2.4576 35 1 6.8902 4.4400 1.0018 36 1 7.8981 3.3398 0.0312 37 1 7.8204 7.2676 2.9675 38 1 9.4102 4.2048 -1.8166 39 1 9.6589 6.0247 -1.9840 40 1 10.2924 6.1639 0.4689 41 1 10.0436 4.3440 0.6363 42 1 5.2435 2.5279 1.7713 43 1 4.7631 4.2032 1.4096 44 1 3.5737 3.0613 2.0805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451444661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:47 Heat of formation + Delta-G solvation = -129.007207 kcal Electronic energy + Delta-G solvation = -28016.043708 eV Core-core repulsion = 24061.769959 eV Total energy + Delta-G solvation = -3954.273749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.91474 -38.57660 -36.76084 -36.56719 -36.29199 -35.07828 -32.04184 -31.59814 -31.34021 -28.17911 -28.10320 -26.07118 -25.46412 -22.80434 -22.09007 -21.21346 -20.38152 -19.39174 -18.56867 -17.79013 -17.18290 -16.80345 -16.49524 -16.25992 -15.69129 -15.19000 -14.78281 -14.52290 -14.04405 -13.98352 -13.72401 -13.48870 -13.41902 -13.19529 -12.92287 -12.65747 -12.31995 -11.97593 -11.92879 -11.82609 -11.67321 -11.32389 -11.25137 -11.19230 -11.05624 -11.04828 -10.95320 -10.86108 -10.83898 -10.56972 -10.50702 -10.45631 -10.11173 -9.70543 -8.96411 -8.82366 -8.56812 -8.07803 -6.14026 -4.24380 0.98448 1.99253 2.42779 3.29386 3.32906 3.37619 3.44872 4.14659 4.25121 4.38180 4.49561 4.65971 4.84391 4.89328 4.91593 4.95352 5.09577 5.12877 5.14792 5.20043 5.26693 5.40917 5.47668 5.54466 5.63275 5.72694 5.80258 5.87324 5.90544 6.05557 6.14924 6.24934 6.33362 6.38785 6.41260 6.61649 6.65558 6.71878 6.98713 7.24745 7.38522 7.53226 7.80900 8.20227 8.81400 9.46993 10.93607 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017539 B = 0.003948 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.053387 B = 7090.788403 C = 7911.477472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.496 6.496 5 C -0.091 4.091 6 H 0.125 0.875 7 C -0.114 4.114 8 C 0.114 3.886 9 N -1.019 6.019 10 S 2.618 3.382 11 O -0.968 6.968 12 O -0.941 6.941 13 C -0.553 4.553 14 C 0.043 3.957 15 C -0.516 4.516 16 H 0.069 0.931 17 C 0.083 3.917 18 N -0.874 5.874 19 Si 0.891 3.109 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.282 1.282 23 C -0.208 4.208 24 C -0.140 4.140 25 C 0.160 3.840 26 H 0.100 0.900 27 C -0.180 4.180 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.098 0.902 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.692 -17.288 -1.381 19.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.382 6.382 5 C -0.112 4.112 6 H 0.143 0.857 7 C -0.153 4.153 8 C -0.011 4.011 9 N -0.855 5.855 10 S 2.717 3.283 11 O -0.959 6.959 12 O -0.932 6.932 13 C -0.686 4.686 14 C 0.040 3.960 15 C -0.553 4.553 16 H 0.087 0.913 17 C -0.122 4.122 18 N -0.509 5.509 19 Si 0.718 3.282 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.208 1.208 23 C -0.246 4.246 24 C -0.179 4.179 25 C 0.054 3.946 26 H 0.118 0.882 27 C -0.239 4.239 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.154 0.846 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.044 -16.285 -1.945 18.729 hybrid contribution -0.210 0.613 0.958 1.157 sum -9.255 -15.672 -0.987 18.227 Atomic orbital electron populations 1.23282 0.76299 1.03635 1.02725 1.86500 1.23423 1.33310 1.84215 1.23450 0.91617 0.81410 0.72318 1.90711 1.66865 1.36204 1.44442 1.22184 0.87460 0.99215 1.02325 0.85731 1.22766 0.96742 1.00716 0.95105 1.21987 0.96470 0.82243 1.00411 1.59247 1.42842 1.23260 1.60135 1.04995 0.75647 0.71387 0.76251 1.93482 1.80082 1.84345 1.38010 1.93543 1.59973 1.52819 1.86853 1.30093 1.15501 1.05411 1.17580 1.18301 0.86859 0.92041 0.98791 1.20569 1.41827 0.98025 0.94927 0.91327 1.24943 0.93607 0.98231 0.95461 1.69984 1.46128 1.37354 0.97453 0.86528 0.78254 0.84637 0.78766 1.19195 1.20587 1.20824 1.23200 1.07933 1.00922 0.92522 1.22553 1.00089 1.00598 0.94699 1.21121 0.88822 0.93810 0.90883 0.88203 1.22424 1.02488 1.03684 0.95288 0.88093 0.91811 0.91820 0.88662 0.90097 0.91221 0.89263 0.84601 0.88388 0.92780 0.90701 0.89509 0.89559 0.91527 0.91471 0.90395 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.53 10.57 -39.25 -0.41 -3.95 16 3 C 0.47 5.63 7.26 36.00 0.26 5.89 16 4 O -0.50 -7.55 15.17 -18.75 -0.28 -7.83 16 5 C -0.09 -0.99 2.98 -89.94 -0.27 -1.26 16 6 H 0.12 1.02 7.85 -51.93 -0.41 0.62 16 7 C -0.11 -1.07 6.52 -24.58 -0.16 -1.23 16 8 C 0.11 1.34 7.07 -2.53 -0.02 1.32 16 9 N -1.02 -16.16 3.32 -104.42 -0.35 -16.50 16 10 S 2.62 54.70 4.99 -107.50 -0.54 54.16 16 11 O -0.97 -21.57 17.28 -57.54 -0.99 -22.57 16 12 O -0.94 -23.19 17.20 -57.54 -0.99 -24.18 16 13 C -0.55 -11.62 6.03 37.16 0.22 -11.39 16 14 C 0.04 1.03 1.32 -155.66 -0.21 0.83 16 15 C -0.52 -14.20 8.20 -34.44 -0.28 -14.48 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C 0.08 2.26 5.38 -17.82 -0.10 2.16 16 18 N -0.87 -23.90 12.98 55.43 0.72 -23.18 16 19 Si 0.89 21.56 29.55 -169.99 -5.02 16.54 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.21 -4.57 9.96 -26.69 -0.27 -4.84 16 24 C -0.14 -3.17 9.49 -26.69 -0.25 -3.43 16 25 C 0.16 2.36 2.78 -66.95 -0.19 2.17 16 26 H 0.10 1.71 6.80 -51.93 -0.35 1.36 16 27 C -0.18 -2.58 8.91 37.16 0.33 -2.25 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.06 7.67 -51.93 -0.40 0.67 16 35 H 0.14 2.96 7.11 -51.93 -0.37 2.59 16 36 H 0.10 1.72 8.09 -51.93 -0.42 1.30 16 37 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 40 H 0.09 2.06 8.14 -51.92 -0.42 1.64 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 43 H 0.08 1.35 7.15 -51.93 -0.37 0.97 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -34.30 377.24 -8.97 -43.27 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.93 Total: 3.75 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 0.15 Total: -25.18 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.37 Total: -39.69 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -2.68 Total: -58.53 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 54.70 SS G_CDS: -0.54 Total: 54.16 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.30 -8.97 -43.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451444661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.735 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds