Wall clock time and date at job start Tue Mar 31 2020 17:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34229 * 116.99828 * 2 1 4 4 O 1.20825 * 120.00229 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99589 * 179.97438 * 3 2 1 6 6 H 1.08999 * 110.64724 * 303.14362 * 5 3 2 7 7 C 1.55158 * 110.71714 * 66.48196 * 5 3 2 8 8 C 1.54916 * 101.58087 * 153.86100 * 7 5 3 9 9 N 1.47425 * 104.83272 * 322.98885 * 8 7 5 10 10 S 1.65592 * 125.64636 * 204.14756 * 9 8 7 11 11 O 1.42095 * 104.27986 * 26.04981 * 10 9 8 12 12 O 1.42107 * 104.27674 * 153.90414 * 10 9 8 13 13 C 1.81403 * 104.45039 * 269.97667 * 10 9 8 14 14 C 1.53007 * 109.46983 * 173.52058 * 13 10 9 15 15 C 1.50704 * 115.55048 * 65.18553 * 14 13 10 16 16 H 1.07999 * 119.99606 * 264.78823 * 15 14 13 17 17 C 1.37877 * 119.99988 * 84.77986 * 15 14 13 18 18 N 1.31515 * 119.99785 * 352.26125 * 17 15 14 19 19 Si 1.86800 * 119.99962 * 172.25471 * 17 15 14 20 20 H 1.48499 * 109.47123 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47162 * 120.00767 * 19 17 15 22 22 H 1.48504 * 109.47038 * 240.00378 * 19 17 15 23 23 C 1.52996 * 117.49676 * 279.51750 * 14 13 10 24 24 C 1.52997 * 117.49530 * 210.85430 * 14 13 10 25 25 C 1.47017 * 108.70024 * 24.12778 * 9 8 7 26 26 H 1.09001 * 110.01278 * 239.44802 * 25 9 8 27 27 C 1.53002 * 109.88229 * 118.36039 * 25 9 8 28 28 H 1.09003 * 109.47016 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46957 * 299.99898 * 1 2 3 30 30 H 1.09000 * 109.46950 * 59.99951 * 1 2 3 31 31 H 1.09002 * 111.00721 * 271.93392 * 7 5 3 32 32 H 1.09004 * 111.00714 * 35.74861 * 7 5 3 33 33 H 1.08997 * 110.36427 * 81.82933 * 8 7 5 34 34 H 1.09004 * 110.36758 * 204.03720 * 8 7 5 35 35 H 1.08998 * 109.46914 * 293.51386 * 13 10 9 36 36 H 1.08992 * 109.46972 * 53.52243 * 13 10 9 37 37 H 0.97001 * 119.99826 * 185.01112 * 18 17 15 38 38 H 1.09001 * 117.50186 * 359.97438 * 23 14 13 39 39 H 1.08995 * 117.50038 * 145.02604 * 23 14 13 40 40 H 1.09007 * 117.49619 * 214.97869 * 24 14 13 41 41 H 1.08995 * 117.49944 * 0.02562 * 24 14 13 42 42 H 1.09007 * 109.47086 * 302.19021 * 27 25 9 43 43 H 1.08998 * 109.47381 * 62.18609 * 27 25 9 44 44 H 1.08998 * 109.47139 * 182.19450 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9790 0.7382 0.8549 7 6 4.1453 0.7249 -1.3298 8 6 5.4917 1.4857 -1.4210 9 7 5.2020 2.8305 -0.8911 10 16 6.0491 4.2093 -1.2424 11 8 6.6148 3.9569 -2.5212 12 8 5.1082 5.2570 -1.0514 13 6 7.3455 4.2792 0.0246 14 6 8.3024 5.4316 -0.2879 15 6 7.7037 6.8125 -0.2116 16 1 7.3317 7.2898 -1.1061 17 6 7.6308 7.4663 1.0001 18 7 7.9409 6.8316 2.1094 19 14 7.0917 9.2536 1.0660 20 1 6.8005 9.7338 -0.3087 21 1 5.8690 9.3714 1.9005 22 1 8.1766 10.0763 1.6588 23 6 9.3816 5.1868 -1.3444 24 6 9.7638 5.2708 0.1355 25 6 4.0361 2.7448 0.0004 26 1 3.2374 3.3892 -0.3670 27 6 4.4326 3.1645 1.4173 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.3079 -0.3512 -1.2699 32 1 3.4975 0.9739 -2.1703 33 1 6.2482 0.9923 -0.8107 34 1 5.8229 1.5477 -2.4576 35 1 6.8902 4.4400 1.0018 36 1 7.8981 3.3398 0.0312 37 1 7.8204 7.2676 2.9675 38 1 9.4102 4.2048 -1.8166 39 1 9.6589 6.0247 -1.9840 40 1 10.2924 6.1639 0.4689 41 1 10.0436 4.3440 0.6363 42 1 5.2435 2.5279 1.7713 43 1 4.7631 4.2032 1.4096 44 1 3.5737 3.0613 2.0805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451444661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:46 Heat of formation + Delta-G solvation = -152.459167 kcal Electronic energy + Delta-G solvation = -28017.060662 eV Core-core repulsion = 24061.769959 eV Total energy + Delta-G solvation = -3955.290702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.82748 -39.55805 -38.57405 -38.02816 -37.47546 -36.82723 -34.09941 -32.61211 -32.39615 -29.85802 -28.83565 -27.51222 -27.01313 -23.79652 -23.12967 -22.95225 -21.49123 -21.08667 -19.82586 -19.08256 -18.37549 -18.25040 -17.74259 -17.21740 -17.08137 -16.82501 -16.65107 -16.01538 -15.58623 -15.05051 -14.97787 -14.69126 -14.56820 -14.39271 -13.96252 -13.84414 -13.74038 -13.49946 -13.16389 -13.08073 -12.98207 -12.95190 -12.88537 -12.83866 -12.72810 -12.47479 -12.42138 -12.21636 -11.99353 -11.91709 -11.83177 -11.75552 -11.55272 -11.45551 -10.88779 -10.55936 -10.17342 -9.76250 -8.21445 -6.35327 -0.61375 1.09453 1.33758 1.37720 1.48381 1.58419 1.96990 2.37776 2.97100 3.04829 3.13759 3.22746 3.39109 3.58637 3.77756 3.94829 4.06620 4.22002 4.24994 4.26044 4.33238 4.34718 4.36366 4.49414 4.53942 4.58796 4.68795 4.73274 4.75864 4.83310 4.92590 4.98169 4.99777 5.10316 5.18501 5.23514 5.26145 5.32016 5.46006 5.53715 5.59621 5.70300 6.21310 6.66745 6.70133 7.36752 8.85516 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017539 B = 0.003948 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.053387 B = 7090.788403 C = 7911.477472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.473 3.527 4 O -0.539 6.539 5 C -0.082 4.082 6 H 0.163 0.837 7 C -0.104 4.104 8 C 0.100 3.900 9 N -1.017 6.017 10 S 2.628 3.372 11 O -0.988 6.988 12 O -0.994 6.994 13 C -0.545 4.545 14 C 0.008 3.992 15 C -0.536 4.536 16 H 0.044 0.956 17 C 0.046 3.954 18 N -0.888 5.888 19 Si 0.931 3.069 20 H -0.275 1.275 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.197 4.197 24 C -0.134 4.134 25 C 0.153 3.847 26 H 0.063 0.937 27 C -0.180 4.180 28 H 0.137 0.863 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.141 0.859 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.266 0.734 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.038 0.962 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.317 -20.765 -0.816 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.266 6.266 3 C 0.317 3.683 4 O -0.428 6.428 5 C -0.102 4.102 6 H 0.181 0.819 7 C -0.142 4.142 8 C -0.024 4.024 9 N -0.856 5.856 10 S 2.729 3.271 11 O -0.979 6.979 12 O -0.985 6.985 13 C -0.679 4.679 14 C 0.005 3.995 15 C -0.574 4.574 16 H 0.062 0.938 17 C -0.158 4.158 18 N -0.524 5.524 19 Si 0.757 3.243 20 H -0.200 1.200 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.234 4.234 24 C -0.173 4.173 25 C 0.047 3.953 26 H 0.081 0.919 27 C -0.238 4.238 28 H 0.155 0.845 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.143 0.857 36 H 0.156 0.844 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.057 0.943 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.655 -19.775 -1.393 21.631 hybrid contribution -0.398 1.626 0.745 1.832 sum -9.053 -18.149 -0.648 20.292 Atomic orbital electron populations 1.23576 0.74867 1.05861 1.02353 1.86489 1.24768 1.31813 1.83526 1.23686 0.92094 0.81368 0.71166 1.90711 1.67839 1.37732 1.46560 1.22189 0.86814 0.96419 1.04787 0.81917 1.22832 0.94821 1.02870 0.93717 1.22468 0.98885 0.80191 1.00843 1.58761 1.42433 1.23763 1.60604 1.04249 0.75335 0.71632 0.75880 1.93441 1.80518 1.84864 1.39074 1.93473 1.61522 1.56063 1.87414 1.29938 1.15202 1.06035 1.16692 1.18416 0.88076 0.91711 1.01249 1.20717 1.42284 1.00163 0.94207 0.93799 1.25462 0.93968 1.00916 0.95425 1.70009 1.46632 1.38172 0.97556 0.85915 0.78390 0.81725 0.78305 1.19988 1.20328 1.19298 1.23255 1.05894 1.02075 0.92189 1.22518 0.98529 1.00889 0.95361 1.21149 0.87398 0.96358 0.90410 0.91884 1.22424 1.03952 1.01799 0.95628 0.84525 0.92130 0.92396 0.84126 0.91071 0.87557 0.89715 0.85678 0.84384 0.92509 0.88044 0.90122 0.91568 0.88975 0.88729 0.94313 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.35 -5.93 10.57 -51.40 -0.54 -6.47 16 3 C 0.47 10.52 7.26 71.24 0.52 11.04 16 4 O -0.54 -16.54 15.17 21.97 0.33 -16.21 16 5 C -0.08 -1.52 2.98 -10.35 -0.03 -1.56 16 6 H 0.16 1.83 7.85 -2.39 -0.02 1.81 16 7 C -0.10 -1.55 6.52 31.99 0.21 -1.34 16 8 C 0.10 2.01 7.07 86.86 0.61 2.62 16 9 N -1.02 -31.16 3.32 -484.26 -1.61 -32.77 16 10 S 2.63 110.94 4.99 -56.49 -0.28 110.65 16 11 O -0.99 -43.95 17.28 -127.65 -2.21 -46.16 16 12 O -0.99 -51.66 17.20 -127.65 -2.20 -53.85 16 13 C -0.55 -22.46 6.03 71.98 0.43 -22.03 16 14 C 0.01 0.38 1.32 -52.93 -0.07 0.31 16 15 C -0.54 -30.33 8.20 25.60 0.21 -30.12 16 16 H 0.04 2.61 7.83 -2.91 -0.02 2.59 16 17 C 0.05 2.53 5.38 84.65 0.46 2.99 16 18 N -0.89 -48.96 12.98 21.45 0.28 -48.68 16 19 Si 0.93 44.99 29.55 68.60 2.03 47.01 16 20 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 C -0.20 -8.42 9.96 30.62 0.30 -8.11 16 24 C -0.13 -5.90 9.49 30.62 0.29 -5.61 16 25 C 0.15 4.42 2.78 45.34 0.13 4.55 16 26 H 0.06 2.28 6.80 -2.39 -0.02 2.27 16 27 C -0.18 -5.05 8.91 71.98 0.64 -4.41 16 28 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 30 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 31 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.22 8.04 -2.38 -0.02 1.20 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.80 7.67 -2.38 -0.02 1.78 16 35 H 0.12 5.46 7.11 -2.39 -0.02 5.44 16 36 H 0.14 4.41 8.09 -2.39 -0.02 4.39 16 37 H 0.27 13.90 8.32 -92.71 -0.77 13.13 16 38 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 39 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 41 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 42 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.04 1.38 7.15 -2.39 -0.02 1.37 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -78.56 377.24 1.69 -76.87 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.99 Total: 19.75 kcal Atomic # 6 Polarization: -55.04 SS G_CDS: 4.90 Total: -50.14 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -1.33 Total: -81.45 kcal Atomic # 8 Polarization: -118.08 SS G_CDS: -4.61 Total: -122.70 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 110.94 SS G_CDS: -0.28 Total: 110.65 kcal Total: -78.56 1.69 -76.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451444661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.594 kcal (2) G-P(sol) polarization free energy of solvation -78.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds