Wall clock time and date at job start Tue Mar 31 2020 17:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 117.00272 * 2 1 4 4 O 1.20831 * 119.99673 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00121 * 180.02562 * 3 2 1 6 6 H 1.08997 * 110.64695 * 61.68451 * 5 3 2 7 7 C 1.55161 * 110.71741 * 298.53995 * 5 3 2 8 8 C 1.54915 * 101.57910 * 206.13611 * 7 5 3 9 9 N 1.47418 * 104.83435 * 37.01439 * 8 7 5 10 10 S 1.65600 * 125.65004 * 155.83050 * 9 8 7 11 11 O 1.42092 * 104.27805 * 333.95638 * 10 9 8 12 12 O 1.42098 * 104.27895 * 206.09538 * 10 9 8 13 13 C 1.81409 * 104.44669 * 90.02645 * 10 9 8 14 14 C 1.52994 * 109.46864 * 186.90499 * 13 10 9 15 15 C 1.50699 * 115.55056 * 302.95554 * 14 13 10 16 16 H 1.08003 * 119.99794 * 95.10274 * 15 14 13 17 17 C 1.37880 * 120.00178 * 275.10155 * 15 14 13 18 18 N 1.31509 * 119.99649 * 6.29421 * 17 15 14 19 19 Si 1.86796 * 120.00015 * 186.28901 * 17 15 14 20 20 H 1.48501 * 109.47162 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47166 * 120.00235 * 19 17 15 22 22 H 1.48497 * 109.47501 * 239.99996 * 19 17 15 23 23 C 1.52998 * 117.50449 * 88.63022 * 14 13 10 24 24 C 1.53001 * 117.50064 * 157.29123 * 14 13 10 25 25 C 1.47022 * 108.69956 * 336.09576 * 9 8 7 26 26 H 1.09006 * 109.88360 * 120.25357 * 25 9 8 27 27 C 1.53008 * 109.88188 * 241.41359 * 25 9 8 28 28 H 1.08995 * 109.47535 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47366 * 300.00183 * 1 2 3 30 30 H 1.09007 * 109.47366 * 60.00326 * 1 2 3 31 31 H 1.08997 * 111.00315 * 88.06648 * 7 5 3 32 32 H 1.08996 * 111.03849 * 324.22573 * 7 5 3 33 33 H 1.08999 * 110.36772 * 278.17351 * 8 7 5 34 34 H 1.09000 * 110.36109 * 155.85301 * 8 7 5 35 35 H 1.08996 * 109.47100 * 66.90055 * 13 10 9 36 36 H 1.09001 * 109.46986 * 306.89938 * 13 10 9 37 37 H 0.97000 * 120.00673 * 3.21517 * 18 17 15 38 38 H 1.08995 * 117.50503 * 215.00499 * 23 14 13 39 39 H 1.09005 * 117.49559 * 0.02562 * 23 14 13 40 40 H 1.08997 * 117.49868 * 359.97005 * 24 14 13 41 41 H 1.09002 * 117.50389 * 144.97321 * 24 14 13 42 42 H 1.09001 * 109.46832 * 58.54672 * 27 25 9 43 43 H 1.09002 * 109.47038 * 178.55185 * 27 25 9 44 44 H 1.09001 * 109.47328 * 298.54816 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9750 0.8119 -0.8988 7 6 4.1512 0.6108 1.2740 8 6 5.4982 1.3609 1.4251 9 7 5.2064 2.7468 1.0162 10 16 6.0552 4.0899 1.4831 11 8 6.6264 3.7266 2.7324 12 8 5.1136 5.1499 1.3886 13 6 7.3461 4.2707 0.2214 14 6 8.3104 5.3844 0.6345 15 6 7.6815 6.7325 0.8755 16 1 7.4017 7.0267 1.8763 17 6 7.4634 7.5904 -0.1816 18 7 7.6883 7.1870 -1.4130 19 14 6.8485 9.3255 0.1352 20 1 6.6757 9.5305 1.5958 21 1 7.8356 10.3039 -0.3881 22 1 5.5459 9.5220 -0.5502 23 6 9.5057 4.9963 1.5072 24 6 9.7179 5.3585 0.0351 25 6 4.0330 2.7398 0.1303 26 1 3.2380 3.3469 0.5633 27 6 4.4173 3.2856 -1.2465 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 4.3132 -0.4559 1.1195 32 1 3.5079 0.7853 2.1364 33 1 6.2518 0.9229 0.7705 34 1 5.8331 1.3338 2.4620 35 1 6.8871 4.5235 -0.7343 36 1 7.8937 3.3332 0.1249 37 1 7.9627 6.2719 -1.5812 38 1 9.8372 5.7159 2.2557 39 1 9.6053 3.9474 1.7867 40 1 9.9570 4.5478 -0.6531 41 1 10.1889 6.3165 -0.1852 42 1 5.2167 2.6766 -1.6686 43 1 3.5494 3.2535 -1.9052 44 1 4.7594 4.3157 -1.1465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451444663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:59 Heat of formation + Delta-G solvation = -133.937439 kcal Electronic energy + Delta-G solvation = -28110.320492 eV Core-core repulsion = 24155.832952 eV Total energy + Delta-G solvation = -3954.487540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.94563 -38.62403 -37.07667 -36.60144 -36.36089 -35.13023 -31.99558 -31.65502 -31.39106 -28.33716 -28.12668 -26.11984 -24.99373 -22.84171 -22.13057 -21.40610 -20.45550 -19.65802 -18.62333 -17.83251 -17.21482 -16.89787 -16.84829 -16.29804 -15.84042 -15.38856 -14.82686 -14.13667 -14.05968 -13.83568 -13.73204 -13.54696 -13.47120 -13.26514 -12.96042 -12.77666 -12.57466 -12.30609 -11.97336 -11.92777 -11.69961 -11.38591 -11.28012 -11.24566 -11.18252 -11.06924 -10.94481 -10.89594 -10.75128 -10.62743 -10.54003 -10.35274 -10.08576 -9.69624 -8.92025 -8.64968 -8.54885 -8.28607 -6.46255 -4.26250 0.89899 1.96682 2.40041 3.28238 3.46075 3.51614 3.66124 4.08933 4.20700 4.44290 4.49384 4.60253 4.81446 4.82941 4.87495 4.91901 4.98089 5.04354 5.09192 5.19944 5.25110 5.34547 5.39233 5.49539 5.52633 5.66077 5.69619 5.76028 5.84925 5.97083 6.06876 6.11910 6.16779 6.27106 6.31635 6.37865 6.52547 6.58880 6.75312 7.00403 7.17603 7.50385 8.02485 8.33538 8.75866 9.53422 10.92916 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.003997 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.882964 B = 7002.709951 C = 7788.213194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.495 6.495 5 C -0.091 4.091 6 H 0.126 0.874 7 C -0.115 4.115 8 C 0.113 3.887 9 N -1.021 6.021 10 S 2.631 3.369 11 O -0.966 6.966 12 O -0.935 6.935 13 C -0.568 4.568 14 C 0.021 3.979 15 C -0.596 4.596 16 H 0.062 0.938 17 C 0.043 3.957 18 N -0.895 5.895 19 Si 1.068 2.932 20 H -0.285 1.285 21 H -0.286 1.286 22 H -0.283 1.283 23 C -0.190 4.190 24 C -0.162 4.162 25 C 0.161 3.839 26 H 0.100 0.900 27 C -0.180 4.180 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.274 0.726 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 -17.839 0.151 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.382 6.382 5 C -0.111 4.111 6 H 0.144 0.856 7 C -0.154 4.154 8 C -0.012 4.012 9 N -0.857 5.857 10 S 2.729 3.271 11 O -0.957 6.957 12 O -0.925 6.925 13 C -0.701 4.701 14 C 0.019 3.981 15 C -0.633 4.633 16 H 0.080 0.920 17 C -0.165 4.165 18 N -0.528 5.528 19 Si 0.896 3.104 20 H -0.210 1.210 21 H -0.212 1.212 22 H -0.209 1.209 23 C -0.227 4.227 24 C -0.202 4.202 25 C 0.055 3.945 26 H 0.118 0.882 27 C -0.239 4.239 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.204 -15.525 0.206 18.050 hybrid contribution 0.534 -1.747 -0.062 1.828 sum -8.670 -17.273 0.144 19.327 Atomic orbital electron populations 1.23284 0.76256 1.03657 1.02748 1.86494 1.23452 1.33277 1.84205 1.23436 0.91571 0.81444 0.72371 1.90718 1.66854 1.36201 1.44394 1.22186 0.87530 0.98766 1.02651 0.85625 1.22772 0.96599 1.00153 0.95838 1.22004 0.96585 0.81126 1.01486 1.59296 1.42288 1.21203 1.62871 1.04585 0.75323 0.71375 0.75832 1.93482 1.79990 1.82797 1.39428 1.93550 1.59652 1.52457 1.86886 1.30234 1.16364 1.05927 1.17556 1.18552 0.85822 0.93177 1.00545 1.21455 1.45707 0.99291 0.96868 0.91961 1.25796 0.93418 1.04744 0.92504 1.70718 1.41064 1.20446 1.20551 0.83563 0.76828 0.74379 0.75641 1.21035 1.21206 1.20908 1.23033 1.05828 0.99781 0.94068 1.22777 1.01828 1.01199 0.94354 1.21119 0.88607 0.93647 0.91174 0.88203 1.22417 1.02631 1.02946 0.95860 0.88074 0.91793 0.91803 0.88613 0.90026 0.91269 0.89251 0.85611 0.88170 0.91466 0.89261 0.90776 0.91266 0.89226 0.91620 0.90761 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.50 10.55 -39.25 -0.41 -3.92 16 3 C 0.47 5.59 7.26 36.00 0.26 5.85 16 4 O -0.50 -7.50 15.21 -18.75 -0.29 -7.79 16 5 C -0.09 -0.97 2.97 -89.94 -0.27 -1.24 16 6 H 0.13 1.01 7.86 -51.93 -0.41 0.61 16 7 C -0.11 -1.06 6.50 -24.58 -0.16 -1.22 16 8 C 0.11 1.32 7.07 -2.53 -0.02 1.30 16 9 N -1.02 -16.16 3.32 -104.42 -0.35 -16.51 16 10 S 2.63 55.51 4.81 -107.50 -0.52 54.99 16 11 O -0.97 -21.89 17.28 -57.54 -0.99 -22.88 16 12 O -0.94 -23.35 16.93 -57.54 -0.97 -24.33 16 13 C -0.57 -11.80 6.00 37.15 0.22 -11.58 16 14 C 0.02 0.52 0.98 -155.66 -0.15 0.37 16 15 C -0.60 -16.60 7.73 -34.44 -0.27 -16.87 16 16 H 0.06 1.80 7.82 -52.48 -0.41 1.39 16 17 C 0.04 1.21 5.39 -17.82 -0.10 1.11 16 18 N -0.89 -25.62 13.49 55.43 0.75 -24.87 16 19 Si 1.07 25.80 29.91 -169.99 -5.08 20.72 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.19 -4.13 9.94 -26.70 -0.27 -4.40 16 24 C -0.16 -3.62 8.86 -26.69 -0.24 -3.85 16 25 C 0.16 2.36 2.73 -66.95 -0.18 2.18 16 26 H 0.10 1.71 6.88 -51.93 -0.36 1.35 16 27 C -0.18 -2.57 8.96 37.16 0.33 -2.24 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.07 7.67 -51.93 -0.40 0.67 16 35 H 0.13 2.64 6.57 -51.93 -0.34 2.30 16 36 H 0.10 1.71 8.11 -51.92 -0.42 1.28 16 37 H 0.27 7.63 6.13 -40.82 -0.25 7.38 16 38 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.08 1.32 7.08 -51.93 -0.37 0.95 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -35.39 373.47 -8.82 -44.21 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.82 Total: 4.03 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 0.24 Total: -29.28 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.40 Total: -41.38 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -2.67 Total: -58.91 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Atomic # 16 Polarization: 55.51 SS G_CDS: -0.52 Total: 54.99 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.39 -8.82 -44.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451444663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.732 kcal (2) G-P(sol) polarization free energy of solvation -35.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds