Wall clock time and date at job start Tue Mar 31 2020 17:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46509 * 109.46892 * 200.47922 * 3 2 1 5 5 C 1.37096 * 119.99698 * 264.14054 * 4 3 2 6 6 H 1.07998 * 120.00032 * 197.43124 * 5 4 3 7 7 C 1.38952 * 120.00478 * 17.44076 * 5 4 3 8 8 N 1.31415 * 119.99922 * 21.51563 * 7 5 4 9 9 Si 1.86798 * 119.99950 * 201.52491 * 7 5 4 10 10 H 1.48503 * 109.47390 * 89.99602 * 9 7 5 11 11 H 1.48504 * 109.46914 * 209.99383 * 9 7 5 12 12 H 1.48500 * 109.47045 * 329.99147 * 9 7 5 13 13 C 1.34774 * 119.99839 * 84.13916 * 4 3 2 14 14 O 1.21298 * 119.99638 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00298 * 0.02562 * 13 4 3 16 16 C 1.52999 * 109.47260 * 179.97438 * 15 13 4 17 17 C 1.53002 * 109.47109 * 179.97438 * 16 15 13 18 18 O 1.42902 * 109.46933 * 180.02562 * 17 16 15 19 19 C 1.35973 * 116.99367 * 180.02562 * 18 17 16 20 20 C 1.38693 * 119.99233 * 0.02562 * 19 18 17 21 21 C 1.38218 * 120.08560 * 179.75694 * 20 19 18 22 22 C 1.38527 * 120.09870 * 0.45377 * 21 20 19 23 23 C 1.39263 * 119.92150 * 359.54049 * 22 21 20 24 24 C 1.38537 * 119.87174 * 0.23860 * 23 22 21 25 25 O 1.36498 * 108.65233 * 180.25217 * 23 22 21 26 26 C 1.43988 * 105.49836 * 342.70474 * 25 23 22 27 27 O 1.36602 * 131.46466 * 179.85837 * 22 21 20 28 28 H 4.40641 * 5.51430 * 180.02562 * 4 1 2 29 29 H 1.08998 * 109.47330 * 80.48366 * 3 2 1 30 30 H 1.09000 * 109.47710 * 320.47516 * 3 2 1 31 31 H 0.96998 * 119.99897 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47395 * 59.99351 * 15 13 4 33 33 H 1.09004 * 109.46690 * 300.00047 * 15 13 4 34 34 H 1.08999 * 109.46951 * 59.99804 * 16 15 13 35 35 H 1.09000 * 109.46753 * 299.99855 * 16 15 13 36 36 H 1.08998 * 109.46571 * 60.00101 * 17 16 15 37 37 H 1.08998 * 109.47006 * 299.99943 * 17 16 15 38 38 H 1.07998 * 119.95974 * 0.02562 * 20 19 18 39 39 H 1.08004 * 119.95350 * 180.33768 * 21 20 19 40 40 H 1.08000 * 119.99723 * 180.02562 * 24 23 22 41 41 H 1.09000 * 110.57475 * 268.58099 * 26 25 23 42 42 H 1.09003 * 110.56972 * 145.70721 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2949 0.4833 5 6 3.4760 2.2758 -0.4112 6 1 4.0880 3.1069 -0.0933 7 6 3.0354 2.2010 -1.7269 8 7 1.9844 1.4715 -2.0273 9 14 3.9371 3.1370 -3.0686 10 1 5.0058 2.2780 -3.6389 11 1 2.9793 3.5123 -4.1396 12 1 4.5430 4.3649 -2.4938 13 6 3.2458 1.5211 1.8072 14 8 3.6492 2.5928 2.2073 15 6 2.8701 0.4426 2.7904 16 6 3.0898 0.9530 4.2159 17 6 2.7077 -0.1417 5.2141 18 8 2.9123 0.3352 6.5456 19 6 2.6189 -0.5214 7.5599 20 6 2.1448 -1.7938 7.2776 21 6 1.8507 -2.6680 8.3071 22 6 2.0198 -2.2724 9.6239 23 6 2.4959 -0.9954 9.9100 24 6 2.7942 -0.1226 8.8763 25 8 2.5781 -0.8535 11.2651 26 6 1.7632 -1.9069 11.8123 27 8 1.8036 -2.9310 10.8010 28 1 -1.0502 -0.0004 0.0000 29 1 3.0094 -0.1691 -1.0135 30 1 3.0098 -0.7918 0.6540 31 1 1.6770 1.4189 -2.9458 32 1 3.4911 -0.4369 2.6200 33 1 1.8212 0.1782 2.6563 34 1 2.4691 1.8326 4.3866 35 1 4.1388 1.2171 4.3496 36 1 3.3281 -1.0215 5.0435 37 1 1.6586 -0.4054 5.0802 38 1 2.0093 -2.1036 6.2519 39 1 1.4868 -3.6602 8.0847 40 1 3.1640 0.8681 9.0958 41 1 0.7412 -1.5602 11.9657 42 1 2.1884 -2.2740 12.7465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490963605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:31 Heat of formation + Delta-G solvation = -38.597573 kcal Electronic energy + Delta-G solvation = -26661.798717 eV Core-core repulsion = 22576.001472 eV Total energy + Delta-G solvation = -4085.797245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.41360 -39.92388 -38.73218 -36.78474 -36.53300 -35.30466 -33.40461 -32.07783 -31.24479 -30.92643 -29.49527 -27.38069 -26.34315 -26.04994 -24.56786 -23.36798 -22.79121 -21.46736 -19.17926 -18.59157 -18.17314 -17.89100 -17.72236 -17.00081 -16.66629 -16.33886 -16.14525 -15.80603 -15.18872 -14.73918 -14.70968 -14.51784 -14.13487 -14.12475 -13.61216 -13.30222 -13.23474 -13.18625 -12.94291 -12.50638 -12.25911 -12.24747 -12.00456 -11.56935 -11.45569 -11.42203 -11.02060 -10.84389 -10.69561 -10.50038 -10.34919 -10.30522 -9.40433 -9.30678 -9.04066 -8.93609 -8.45874 -8.02972 -7.89797 -6.36121 -3.88389 0.84797 0.98751 2.31369 2.94689 3.13430 3.24307 3.28058 3.29690 3.38464 3.64536 3.88308 4.00234 4.16356 4.20797 4.34325 4.54890 4.59740 4.72207 4.84145 4.93152 4.97230 5.03159 5.12227 5.23573 5.29480 5.38622 5.44358 5.63889 5.66381 5.75023 5.81446 5.84169 5.96781 5.99605 6.03071 6.29957 6.40218 6.55295 6.71158 6.77200 6.98497 7.22557 7.54413 8.02406 8.39714 8.75969 9.11186 9.33160 9.87910 10.64881 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.031119 B = 0.001920 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.556705 B =14576.216411 C =15229.677276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.114 4.114 3 C 0.231 3.769 4 N -0.441 5.441 5 C -0.315 4.315 6 H 0.105 0.895 7 C 0.030 3.970 8 N -0.863 5.863 9 Si 0.921 3.079 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.451 3.549 14 O -0.582 6.582 15 C -0.129 4.129 16 C -0.098 4.098 17 C 0.059 3.941 18 O -0.305 6.305 19 C 0.153 3.847 20 C -0.202 4.202 21 C -0.056 4.056 22 C -0.016 4.016 23 C 0.072 3.928 24 C -0.139 4.139 25 O -0.307 6.307 26 C 0.214 3.786 27 O -0.310 6.310 28 H 0.199 0.801 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.268 0.732 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.083 0.917 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.375 -11.605 19.102 22.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.115 4.115 3 C 0.108 3.892 4 N -0.160 5.160 5 C -0.442 4.442 6 H 0.122 0.878 7 C -0.174 4.174 8 N -0.501 5.501 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.240 3.760 14 O -0.466 6.466 15 C -0.169 4.169 16 C -0.136 4.136 17 C -0.016 4.016 18 O -0.218 6.218 19 C 0.107 3.893 20 C -0.221 4.221 21 C -0.075 4.075 22 C -0.060 4.060 23 C 0.028 3.972 24 C -0.158 4.158 25 O -0.223 6.223 26 C 0.102 3.898 27 O -0.227 6.227 28 H 0.216 0.784 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.101 0.899 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.087 -10.975 19.295 22.296 hybrid contribution -0.268 0.136 -0.790 0.846 sum -2.355 -10.838 18.505 21.574 Atomic orbital electron populations 1.24289 0.95385 1.02932 1.05353 1.23194 0.94365 0.97680 0.96294 1.18269 0.84256 0.85305 1.01398 1.43719 1.55995 1.12048 1.04208 1.19677 1.30215 1.05190 0.89156 0.87779 1.25293 0.95160 0.98030 0.98896 1.70087 1.19693 1.40496 1.19808 0.86001 0.79149 0.79889 0.80153 1.20340 1.21140 1.19404 1.19940 0.84396 0.88767 0.82932 1.90538 1.51057 1.26971 1.78082 1.21445 1.02785 0.99004 0.93699 1.21199 1.04094 0.97276 0.91030 1.23058 1.01072 0.98640 0.78828 1.86120 1.81284 1.39906 1.14463 1.18403 0.94280 0.88895 0.87758 1.21091 1.07220 0.93573 1.00175 1.19805 0.99736 1.00655 0.87297 1.19632 1.07011 0.90978 0.88362 1.19285 1.00259 0.94033 0.83653 1.19012 1.08811 1.00628 0.87330 1.87362 1.67191 1.52247 1.15524 1.25610 0.95903 0.76171 0.92098 1.87361 1.89823 1.31176 1.14370 0.78399 0.87243 0.91959 0.92145 0.90212 0.89897 0.90182 0.90157 0.91655 0.91642 0.83667 0.84405 0.83769 0.89908 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.16 19.25 29.55 0.57 -4.59 16 2 C -0.11 -2.43 10.88 -37.12 -0.40 -2.83 16 3 C 0.23 4.85 4.91 -6.83 -0.03 4.82 16 4 N -0.44 -10.74 2.60 -117.93 -0.31 -11.05 16 5 C -0.32 -8.48 9.33 -14.93 -0.14 -8.62 16 6 H 0.10 2.97 7.38 -52.49 -0.39 2.59 16 7 C 0.03 0.78 4.87 -17.47 -0.08 0.69 16 8 N -0.86 -22.19 9.48 55.50 0.53 -21.67 16 9 Si 0.92 20.18 29.60 -169.99 -5.03 15.15 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.45 10.43 7.56 -10.99 -0.08 10.35 16 14 O -0.58 -15.60 15.63 5.54 0.09 -15.51 16 15 C -0.13 -2.14 4.30 -27.88 -0.12 -2.26 16 16 C -0.10 -1.49 4.87 -26.73 -0.13 -1.62 16 17 C 0.06 0.69 4.74 37.16 0.18 0.87 16 18 O -0.30 -3.98 10.14 -19.66 -0.20 -4.18 16 19 C 0.15 1.80 6.68 -39.26 -0.26 1.54 16 20 C -0.20 -2.01 9.03 -39.42 -0.36 -2.36 16 21 C -0.06 -0.54 10.05 -39.48 -0.40 -0.94 16 22 C -0.02 -0.18 7.15 -39.09 -0.28 -0.46 16 23 C 0.07 0.84 7.15 -39.09 -0.28 0.56 16 24 C -0.14 -1.61 10.00 -39.32 -0.39 -2.00 16 25 O -0.31 -3.26 11.40 -45.68 -0.52 -3.78 16 26 C 0.21 1.57 8.89 101.05 0.90 2.46 16 27 O -0.31 -3.19 11.41 -46.03 -0.53 -3.71 16 28 H 0.20 3.19 7.80 -54.08 -0.42 2.77 16 29 H 0.11 2.45 6.44 -51.93 -0.33 2.11 16 30 H 0.06 1.05 6.69 -51.93 -0.35 0.70 16 31 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.08 1.11 7.42 -51.93 -0.39 0.73 16 33 H 0.08 1.32 7.51 -51.93 -0.39 0.93 16 34 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 35 H 0.08 1.31 8.10 -51.93 -0.42 0.88 16 36 H 0.07 0.64 7.66 -51.93 -0.40 0.25 16 37 H 0.07 0.68 7.66 -51.93 -0.40 0.28 16 38 H 0.15 1.17 6.29 -52.49 -0.33 0.84 16 39 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 40 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -32.67 362.99 -6.88 -39.55 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.06 Total: 4.16 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.32 Total: -4.41 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.22 Total: -32.72 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -1.16 Total: -27.19 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.67 -6.88 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490963605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.948 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds