Wall clock time and date at job start Tue Mar 31 2020 17:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 O 1.45200 * 109.47046 * 240.00261 * 2 1 3 5 5 C 1.34637 * 116.99977 * 209.99558 * 4 2 1 6 6 O 1.21511 * 119.99844 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00295 * 179.97438 * 5 4 2 8 8 C 1.46927 * 120.62568 * 359.72174 * 7 5 4 9 9 C 1.52759 * 109.00815 * 233.57901 * 8 7 5 10 10 C 1.53031 * 109.38785 * 305.59105 * 9 8 7 11 11 O 1.45202 * 109.45207 * 181.25168 * 10 9 8 12 12 C 1.34230 * 116.99729 * 89.93992 * 11 10 9 13 13 O 1.20818 * 120.00012 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99639 * 180.02562 * 12 11 10 15 15 S 1.80993 * 109.46824 * 180.02562 * 14 12 11 16 16 C 1.76202 * 99.99888 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00005 * 359.97438 * 16 15 14 18 18 C 1.38804 * 119.99977 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99977 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99936 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46820 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.46975 * 119.99707 * 20 18 16 23 23 H 1.48501 * 109.47047 * 240.00041 * 20 18 16 24 24 C 1.53049 * 109.53531 * 61.23780 * 10 9 8 25 25 C 1.46920 * 120.63508 * 180.02562 * 7 5 4 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.09003 * 109.58958 * 353.41914 * 8 7 5 34 34 H 1.09003 * 109.58440 * 113.84575 * 8 7 5 35 35 H 1.09004 * 109.56282 * 185.55270 * 9 8 7 36 36 H 1.09006 * 109.38268 * 65.52298 * 9 8 7 37 37 H 1.09002 * 109.46370 * 301.22212 * 10 9 8 38 38 H 1.09006 * 109.46656 * 299.99732 * 14 12 11 39 39 H 1.08993 * 109.47066 * 59.99759 * 14 12 11 40 40 H 0.96998 * 119.99816 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.49589 * 178.68215 * 24 10 9 42 42 H 1.08994 * 109.52013 * 58.60678 * 24 10 9 43 43 H 1.09002 * 109.58765 * 246.16111 * 25 7 5 44 44 H 1.09002 * 109.58337 * 6.43368 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 3.1973 -1.3188 -1.0849 6 8 3.8085 -1.3014 -0.0349 7 7 3.7033 -1.9741 -2.1484 8 6 2.9724 -2.0101 -3.4225 9 6 2.8084 -3.4642 -3.8610 10 6 4.1808 -4.1397 -3.9040 11 8 4.0298 -5.5136 -4.3492 12 6 4.1031 -5.7374 -5.6707 13 8 4.2879 -4.8161 -6.4301 14 6 3.9550 -7.1380 -6.2069 15 16 4.1010 -7.1119 -8.0108 16 6 3.8961 -8.8269 -8.3592 17 1 3.7379 -9.5268 -7.5520 18 6 3.9379 -9.2784 -9.6711 19 7 4.1302 -8.4253 -10.6549 20 14 3.7214 -11.0967 -10.0404 21 1 3.5222 -11.8395 -8.7700 22 1 2.5373 -11.2863 -10.9161 23 1 4.9333 -11.6098 -10.7285 24 6 4.8038 -4.1223 -2.5062 25 6 4.9930 -2.6714 -2.0539 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.9901 -1.5557 -3.2933 34 1 3.5332 -1.4637 -4.1810 35 1 2.3552 -3.4977 -4.8518 36 1 2.1678 -3.9863 -3.1502 37 1 4.8285 -3.6026 -4.5969 38 1 4.7371 -7.7718 -5.7886 39 1 2.9786 -7.5330 -5.9267 40 1 4.1598 -8.7409 -11.5716 41 1 5.7709 -4.6243 -2.5327 42 1 4.1452 -4.6381 -1.8075 43 1 5.7222 -2.1801 -2.6982 44 1 5.3446 -2.6510 -1.0224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491478348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:16 Heat of formation + Delta-G solvation = -176.887831 kcal Electronic energy + Delta-G solvation = -25874.905624 eV Core-core repulsion = 21918.555615 eV Total energy + Delta-G solvation = -3956.350009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.08194 -40.24720 -38.47656 -36.84774 -35.89805 -33.65877 -32.50899 -32.29375 -31.51774 -29.61880 -27.71225 -25.79764 -25.47702 -23.84200 -22.76047 -21.38194 -20.78961 -20.17788 -18.59481 -17.96883 -17.41723 -17.13560 -16.60248 -15.96421 -15.74457 -15.34137 -15.04303 -14.86908 -14.50814 -14.28207 -14.22976 -14.10504 -13.59236 -13.28684 -13.25246 -12.94727 -12.72559 -12.68696 -12.58517 -12.42313 -12.12869 -11.86713 -11.65392 -11.57563 -11.30170 -11.11533 -11.10333 -10.95255 -10.92924 -10.79317 -10.74180 -10.30351 -10.03169 -9.90996 -9.17038 -9.14642 -8.38461 -6.62964 -6.29913 -4.02538 1.77648 2.46781 2.61383 2.62955 3.18029 3.22105 3.27662 3.44557 3.49060 4.12418 4.36000 4.38739 4.44389 4.50300 4.64477 4.73027 4.74247 4.88958 4.92572 5.00368 5.06202 5.09926 5.19889 5.29390 5.31730 5.33984 5.37485 5.41571 5.46603 5.58704 5.61532 5.65048 5.73292 5.74799 5.77704 5.93096 6.05645 6.09697 6.11829 6.67909 6.97719 7.53526 7.96774 8.13182 8.28281 9.15939 10.77635 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.032818 B = 0.001921 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.978437 B =14572.260816 C =14825.727655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.099 3.901 3 C -0.171 4.171 4 O -0.364 6.364 5 C 0.653 3.347 6 O -0.575 6.575 7 N -0.596 5.596 8 C 0.117 3.883 9 C -0.153 4.153 10 C 0.088 3.912 11 O -0.355 6.355 12 C 0.479 3.521 13 O -0.487 6.487 14 C -0.129 4.129 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.922 3.078 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.132 4.132 25 C 0.131 3.869 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.269 0.731 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.259 16.223 21.116 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.043 3.957 3 C -0.228 4.228 4 O -0.278 6.278 5 C 0.408 3.592 6 O -0.464 6.464 7 N -0.336 5.336 8 C -0.005 4.005 9 C -0.191 4.191 10 C 0.032 3.968 11 O -0.273 6.273 12 C 0.320 3.680 13 O -0.373 6.373 14 C -0.277 4.277 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.095 0.905 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.748 3.252 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.170 4.170 25 C 0.010 3.990 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.877 17.497 20.375 27.135 hybrid contribution -0.335 -2.125 0.497 2.208 sum -4.212 15.373 20.872 26.262 Atomic orbital electron populations 1.21914 0.92265 1.03349 1.03259 1.22691 0.94545 0.92321 0.86114 1.22226 1.02332 0.95223 1.03011 1.86307 1.35303 1.64358 1.41832 1.17969 0.80252 0.77653 0.83374 1.90968 1.61464 1.65907 1.28067 1.46997 1.22407 1.53633 1.10604 1.21634 0.98029 0.96578 0.84307 1.22284 0.97616 0.95495 1.03699 1.22604 0.97279 0.80990 0.95914 1.86597 1.83535 1.30878 1.26278 1.23329 0.72512 0.92098 0.80022 1.90651 1.43573 1.45295 1.57736 1.23305 1.06332 0.92115 1.05985 1.85399 1.94800 1.12366 0.90678 1.22887 1.57717 0.92257 0.95520 0.90531 1.25008 0.94381 0.99110 0.95036 1.70016 1.45990 1.34411 0.99802 0.86069 0.78028 0.82608 0.78531 1.19499 1.20499 1.20496 1.22027 1.02921 0.96695 0.95338 1.21643 0.82769 0.90397 1.04198 0.91571 0.90155 0.91309 0.89476 0.90645 0.91830 0.91581 0.88282 0.90427 0.89262 0.90352 0.89268 0.87945 0.87955 0.92110 0.89030 0.90095 0.90372 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.57 37.16 0.36 -0.48 16 2 C 0.10 0.79 3.19 -26.73 -0.09 0.70 16 3 C -0.17 -1.15 9.55 37.16 0.35 -0.80 16 4 O -0.36 -3.69 8.52 -40.32 -0.34 -4.03 16 5 C 0.65 7.59 8.40 54.06 0.45 8.04 16 6 O -0.57 -7.99 15.01 -19.28 -0.29 -8.28 16 7 N -0.60 -6.01 2.98 -178.85 -0.53 -6.55 16 8 C 0.12 1.06 6.42 -3.93 -0.03 1.04 16 9 C -0.15 -1.63 5.70 -26.84 -0.15 -1.78 16 10 C 0.09 1.05 2.42 -26.69 -0.06 0.99 16 11 O -0.35 -5.36 9.88 -39.26 -0.39 -5.75 16 12 C 0.48 8.80 7.95 36.01 0.29 9.09 16 13 O -0.49 -10.13 15.08 -18.74 -0.28 -10.41 16 14 C -0.13 -2.58 6.27 36.01 0.23 -2.35 16 15 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 16 C -0.54 -14.86 9.50 30.94 0.29 -14.57 16 17 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 18 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.50 13.22 55.49 0.73 -24.76 16 20 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.13 -1.25 5.74 -26.63 -0.15 -1.40 16 25 C 0.13 1.17 6.43 -3.74 -0.02 1.15 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.78 7.16 -51.93 -0.37 0.41 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.83 6.93 -51.93 -0.36 0.47 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.14 7.16 -51.93 -0.37 0.77 16 38 H 0.10 1.89 8.14 -51.91 -0.42 1.47 16 39 H 0.10 1.89 8.14 -51.92 -0.42 1.47 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.97 7.00 -51.93 -0.36 0.61 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -33.57 381.12 -8.15 -41.72 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.93 Total: -1.48 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 1.37 Total: 1.59 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.20 Total: -31.31 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -1.30 Total: -28.46 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.57 -8.15 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491478348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.164 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds