Wall clock time and date at job start Tue Mar 31 2020 17:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 O 1.45200 * 109.47046 * 240.00261 * 2 1 3 5 5 C 1.34637 * 116.99977 * 209.99558 * 4 2 1 6 6 O 1.21511 * 119.99844 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00295 * 179.97438 * 5 4 2 8 8 C 1.46927 * 120.62568 * 359.72174 * 7 5 4 9 9 C 1.52759 * 109.00815 * 233.57901 * 8 7 5 10 10 C 1.53031 * 109.38785 * 305.59105 * 9 8 7 11 11 O 1.45202 * 109.45207 * 181.25168 * 10 9 8 12 12 C 1.34230 * 116.99729 * 89.93992 * 11 10 9 13 13 O 1.20818 * 120.00012 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99639 * 180.02562 * 12 11 10 15 15 S 1.80993 * 109.46824 * 180.02562 * 14 12 11 16 16 C 1.76202 * 99.99888 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00005 * 359.97438 * 16 15 14 18 18 C 1.38804 * 119.99977 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99977 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99936 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46820 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.46975 * 119.99707 * 20 18 16 23 23 H 1.48501 * 109.47047 * 240.00041 * 20 18 16 24 24 C 1.53049 * 109.53531 * 61.23780 * 10 9 8 25 25 C 1.46920 * 120.63508 * 180.02562 * 7 5 4 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.09003 * 109.58958 * 353.41914 * 8 7 5 34 34 H 1.09003 * 109.58440 * 113.84575 * 8 7 5 35 35 H 1.09004 * 109.56282 * 185.55270 * 9 8 7 36 36 H 1.09006 * 109.38268 * 65.52298 * 9 8 7 37 37 H 1.09002 * 109.46370 * 301.22212 * 10 9 8 38 38 H 1.09006 * 109.46656 * 299.99732 * 14 12 11 39 39 H 1.08993 * 109.47066 * 59.99759 * 14 12 11 40 40 H 0.96998 * 119.99816 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.49589 * 178.68215 * 24 10 9 42 42 H 1.08994 * 109.52013 * 58.60678 * 24 10 9 43 43 H 1.09002 * 109.58765 * 246.16111 * 25 7 5 44 44 H 1.09002 * 109.58337 * 6.43368 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 3.1973 -1.3188 -1.0849 6 8 3.8085 -1.3014 -0.0349 7 7 3.7033 -1.9741 -2.1484 8 6 2.9724 -2.0101 -3.4225 9 6 2.8084 -3.4642 -3.8610 10 6 4.1808 -4.1397 -3.9040 11 8 4.0298 -5.5136 -4.3492 12 6 4.1031 -5.7374 -5.6707 13 8 4.2879 -4.8161 -6.4301 14 6 3.9550 -7.1380 -6.2069 15 16 4.1010 -7.1119 -8.0108 16 6 3.8961 -8.8269 -8.3592 17 1 3.7379 -9.5268 -7.5520 18 6 3.9379 -9.2784 -9.6711 19 7 4.1302 -8.4253 -10.6549 20 14 3.7214 -11.0967 -10.0404 21 1 3.5222 -11.8395 -8.7700 22 1 2.5373 -11.2863 -10.9161 23 1 4.9333 -11.6098 -10.7285 24 6 4.8038 -4.1223 -2.5062 25 6 4.9930 -2.6714 -2.0539 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.9901 -1.5557 -3.2933 34 1 3.5332 -1.4637 -4.1810 35 1 2.3552 -3.4977 -4.8518 36 1 2.1678 -3.9863 -3.1502 37 1 4.8285 -3.6026 -4.5969 38 1 4.7371 -7.7718 -5.7886 39 1 2.9786 -7.5330 -5.9267 40 1 4.1598 -8.7409 -11.5716 41 1 5.7709 -4.6243 -2.5327 42 1 4.1452 -4.6381 -1.8075 43 1 5.7222 -2.1801 -2.6982 44 1 5.3446 -2.6510 -1.0224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491478348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:15 Heat of formation + Delta-G solvation = -196.244265 kcal Electronic energy + Delta-G solvation = -25875.744982 eV Core-core repulsion = 21918.555615 eV Total energy + Delta-G solvation = -3957.189367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.99951 -41.47971 -39.39103 -37.84403 -37.08572 -34.60814 -34.35321 -33.19938 -32.31469 -31.15836 -28.19831 -27.72629 -26.58414 -24.65017 -23.64004 -22.36449 -21.86726 -21.00081 -19.89356 -19.41957 -18.74114 -18.12770 -17.48672 -17.28415 -17.05246 -16.88753 -16.10656 -16.07621 -15.72440 -15.29633 -15.10983 -15.08916 -14.62910 -14.52796 -14.28566 -14.06193 -13.88763 -13.55726 -13.22540 -13.17531 -13.16250 -12.92939 -12.88729 -12.75513 -12.72171 -12.63496 -12.40609 -11.92677 -11.85677 -11.84021 -11.71913 -11.57278 -11.50211 -11.26910 -11.17116 -10.36849 -9.99944 -8.72398 -8.37532 -6.16534 1.00050 1.04292 1.14452 1.41301 1.42113 1.55917 1.63192 1.89774 2.23874 2.72219 2.97723 3.25630 3.51729 3.57085 3.68652 3.82870 3.85048 3.93986 3.96056 4.14692 4.17116 4.18803 4.22295 4.44255 4.48271 4.51872 4.58391 4.66975 4.69053 4.70614 4.78685 4.84346 4.85847 4.95123 4.99322 5.13368 5.22875 5.31529 5.39010 5.41967 5.43247 6.14228 6.18628 6.71241 7.04735 7.11524 8.71826 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.032818 B = 0.001921 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.978437 B =14572.260816 C =14825.727655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.089 3.911 3 C -0.166 4.166 4 O -0.366 6.366 5 C 0.650 3.350 6 O -0.602 6.602 7 N -0.595 5.595 8 C 0.123 3.877 9 C -0.147 4.147 10 C 0.081 3.919 11 O -0.347 6.347 12 C 0.489 3.511 13 O -0.516 6.516 14 C -0.111 4.111 15 S -0.135 6.135 16 C -0.548 4.548 17 H 0.085 0.915 18 C 0.016 3.984 19 N -0.909 5.909 20 Si 0.999 3.001 21 H -0.258 1.258 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.121 4.121 25 C 0.132 3.868 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.272 0.728 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.901 15.803 22.503 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.034 3.966 3 C -0.223 4.223 4 O -0.281 6.281 5 C 0.405 3.595 6 O -0.494 6.494 7 N -0.335 5.335 8 C 0.001 3.999 9 C -0.185 4.185 10 C 0.026 3.974 11 O -0.264 6.264 12 C 0.332 3.668 13 O -0.404 6.404 14 C -0.259 4.259 15 S 0.092 5.908 16 C -0.696 4.696 17 H 0.103 0.897 18 C -0.189 4.189 19 N -0.545 5.545 20 Si 0.821 3.179 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.159 4.159 25 C 0.011 3.989 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.530 17.085 21.782 28.052 hybrid contribution -0.150 -1.891 0.200 1.907 sum -4.680 15.194 21.983 27.130 Atomic orbital electron populations 1.21925 0.90220 1.03491 1.04543 1.22978 0.96073 0.92579 0.84931 1.22208 1.01043 0.94688 1.04382 1.86316 1.34557 1.64284 1.42899 1.18128 0.80439 0.77693 0.83245 1.90945 1.62290 1.66996 1.29156 1.47111 1.22656 1.53234 1.10499 1.21639 0.98720 0.95538 0.84032 1.22226 0.96695 0.96441 1.03166 1.22959 0.98261 0.79222 0.96988 1.86564 1.82831 1.33003 1.23987 1.22920 0.71964 0.91052 0.80896 1.90649 1.45047 1.45919 1.58742 1.23100 1.07955 0.93831 1.01034 1.85484 1.95130 1.13039 0.97110 1.23233 1.57593 0.92561 0.96184 0.89684 1.26098 0.93732 1.04293 0.94765 1.70161 1.47147 1.36894 1.00344 0.84902 0.78097 0.76209 0.78739 1.18116 1.19903 1.19910 1.21984 1.03315 0.97261 0.93363 1.21718 0.82685 0.89993 1.04493 0.91998 0.87986 0.90863 0.90811 0.88523 0.93755 0.90960 0.87368 0.89474 0.90381 0.90169 0.89874 0.86172 0.86235 0.91853 0.87746 0.90214 0.88790 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.57 71.98 0.69 -0.68 16 2 C 0.09 1.34 3.19 30.59 0.10 1.44 16 3 C -0.17 -2.05 9.55 71.98 0.69 -1.36 16 4 O -0.37 -7.13 8.52 -55.46 -0.47 -7.60 16 5 C 0.65 14.65 8.40 129.79 1.09 15.74 16 6 O -0.60 -16.61 15.01 19.81 0.30 -16.31 16 7 N -0.59 -11.28 2.98 -950.17 -2.83 -14.11 16 8 C 0.12 2.07 6.42 86.22 0.55 2.62 16 9 C -0.15 -2.97 5.70 30.52 0.17 -2.80 16 10 C 0.08 1.83 2.42 30.62 0.07 1.90 16 11 O -0.35 -9.96 9.88 -51.42 -0.51 -10.47 16 12 C 0.49 17.62 7.95 71.24 0.57 18.18 16 13 O -0.52 -21.50 15.08 21.99 0.33 -21.17 16 14 C -0.11 -4.31 6.27 71.24 0.45 -3.86 16 15 S -0.13 -7.14 20.57 -56.49 -1.16 -8.31 16 16 C -0.55 -30.36 9.50 67.96 0.65 -29.71 16 17 H 0.09 4.40 7.80 -2.91 -0.02 4.37 16 18 C 0.02 0.90 5.49 84.86 0.47 1.37 16 19 N -0.91 -54.19 13.22 21.65 0.29 -53.91 16 20 Si 1.00 42.57 29.55 68.60 2.03 44.59 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 C -0.12 -2.09 5.74 30.66 0.18 -1.91 16 25 C 0.13 2.16 6.43 86.35 0.56 2.72 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 1.31 7.16 -2.39 -0.02 1.29 16 30 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.11 1.66 6.93 -2.39 -0.02 1.64 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.08 1.59 8.14 -2.38 -0.02 1.58 16 37 H 0.08 2.05 7.16 -2.39 -0.02 2.03 16 38 H 0.12 4.26 8.14 -2.39 -0.02 4.24 16 39 H 0.12 4.25 8.14 -2.40 -0.02 4.23 16 40 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.10 1.80 7.00 -2.39 -0.02 1.78 16 Total: -1.00 -72.98 381.12 5.18 -67.80 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.99 Total: 15.83 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 6.22 Total: 3.65 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -2.54 Total: -68.02 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -0.35 Total: -55.55 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: -7.14 SS G_CDS: -1.16 Total: -8.31 kcal Total: -72.98 5.18 -67.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491478348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.444 kcal (2) G-P(sol) polarization free energy of solvation -72.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds