Wall clock time and date at job start Tue Mar 31 2020 17:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47620 * 2 1 4 4 C 1.50696 * 109.46837 * 239.99953 * 2 1 3 5 5 H 1.08005 * 119.99868 * 245.48899 * 4 2 1 6 6 C 1.37880 * 120.00329 * 65.49206 * 4 2 1 7 7 N 1.31514 * 120.00265 * 200.90169 * 6 4 2 8 8 Si 1.86803 * 119.99654 * 20.90228 * 6 4 2 9 9 H 1.48495 * 109.46747 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.47367 * 59.99932 * 8 6 4 11 11 H 1.48503 * 109.46965 * 300.00022 * 8 6 4 12 12 O 1.45201 * 109.46961 * 120.00190 * 2 1 3 13 13 C 1.34231 * 117.00079 * 269.99166 * 12 2 1 14 14 O 1.20833 * 119.99768 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00076 * 179.97438 * 13 12 2 16 16 H 1.08999 * 109.46741 * 335.00647 * 15 13 12 17 17 C 1.55398 * 109.46872 * 94.95717 * 15 13 12 18 18 S 1.84248 * 99.76535 * 160.38563 * 17 15 13 19 19 C 1.83563 * 94.85926 * 326.85464 * 18 17 15 20 20 N 1.46133 * 109.46794 * 215.01469 * 15 13 12 21 21 C 1.34774 * 122.50204 * 29.20817 * 20 15 13 22 22 O 1.21516 * 119.99896 * 6.57655 * 21 20 15 23 23 O 1.34637 * 120.00372 * 186.57513 * 21 20 15 24 24 C 1.45199 * 117.00078 * 180.02562 * 23 21 20 25 25 C 1.53001 * 109.47213 * 60.00115 * 24 23 21 26 26 C 1.53001 * 109.47078 * 179.97438 * 24 23 21 27 27 C 1.53000 * 109.47216 * 299.99632 * 24 23 21 28 28 H 1.08992 * 109.47430 * 55.54304 * 1 2 3 29 29 H 1.08993 * 109.47398 * 175.54717 * 1 2 3 30 30 H 1.09004 * 109.47027 * 295.54482 * 1 2 3 31 31 H 0.97001 * 119.99749 * 354.96224 * 7 6 4 32 32 H 1.09001 * 111.34270 * 278.02071 * 17 15 13 33 33 H 1.09001 * 111.34548 * 42.75147 * 17 15 13 34 34 H 1.09005 * 110.33677 * 259.63015 * 19 18 17 35 35 H 1.09001 * 110.33555 * 137.38769 * 19 18 17 36 36 H 1.08994 * 109.47678 * 59.99958 * 25 24 23 37 37 H 1.08995 * 109.47145 * 180.02562 * 25 24 23 38 38 H 1.09001 * 109.47011 * 299.99706 * 25 24 23 39 39 H 1.08997 * 109.47029 * 59.99812 * 26 24 23 40 40 H 1.08995 * 109.46976 * 179.97438 * 26 24 23 41 41 H 1.09003 * 109.47077 * 299.99730 * 26 24 23 42 42 H 1.08997 * 109.46525 * 60.00142 * 27 24 23 43 43 H 1.08995 * 109.47387 * 179.97438 * 27 24 23 44 44 H 1.08997 * 109.47169 * 300.00358 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.5781 -1.6374 -1.1338 6 6 1.7950 -0.1771 -2.4796 7 7 1.8485 -0.9471 -3.5444 8 14 1.3977 1.6393 -2.6595 9 1 1.1857 1.9598 -4.0938 10 1 2.5267 2.4475 -2.1328 11 1 0.1644 1.9543 -1.8947 12 8 2.0140 -0.6845 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9976 1.2517 2.2506 15 6 2.7183 -0.5773 3.5495 16 1 2.4456 -1.6326 3.5553 17 6 4.2647 -0.4425 3.6221 18 16 4.5172 -0.7084 5.4277 19 6 2.9351 0.0795 5.9236 20 7 2.1155 0.0878 4.7026 21 6 0.8993 0.6663 4.6509 22 8 0.2104 0.5447 3.6572 23 8 0.4475 1.3789 5.7001 24 6 -0.8713 1.9731 5.5745 25 6 -1.9081 0.8707 5.3494 26 6 -1.2105 2.7374 6.8559 27 6 -0.8855 2.9370 4.3864 28 1 -0.3634 0.5814 -0.8473 29 1 -0.3634 -1.0245 -0.0798 30 1 -0.3633 0.4432 0.9272 31 1 2.1259 -1.8728 -3.4600 32 1 4.7584 -1.2164 3.0342 33 1 4.5910 0.5521 3.3180 34 1 3.1111 1.0983 6.2688 35 1 2.4480 -0.5066 6.7029 36 1 -1.8981 0.1841 6.1958 37 1 -2.8981 1.3168 5.2547 38 1 -1.6667 0.3259 4.4366 39 1 -0.4719 3.5227 7.0167 40 1 -2.2003 3.1838 6.7614 41 1 -1.2006 2.0504 7.7021 42 1 -0.6441 2.3921 3.4738 43 1 -1.8756 3.3827 4.2918 44 1 -0.1469 3.7223 4.5468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491858494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:59 Heat of formation + Delta-G solvation = -169.001409 kcal Electronic energy + Delta-G solvation = -28414.093180 eV Core-core repulsion = 24458.085152 eV Total energy + Delta-G solvation = -3956.008028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.42332 -41.27021 -39.16798 -37.50178 -37.22856 -35.40004 -35.10912 -32.86633 -32.05013 -28.69249 -28.40763 -28.28757 -27.08844 -26.13485 -24.36406 -22.56001 -21.54800 -20.63010 -19.96389 -19.39494 -18.90110 -18.41245 -17.69583 -17.42115 -16.99695 -16.62588 -16.19157 -15.88652 -15.61774 -15.56320 -15.12458 -14.96045 -14.75595 -14.58119 -14.50152 -14.11621 -13.81728 -13.61566 -13.45874 -13.35578 -13.28730 -13.10360 -12.95028 -12.88713 -12.55991 -12.52670 -12.46173 -12.13844 -12.01747 -11.80756 -11.65052 -11.44682 -11.35524 -11.11327 -11.09658 -10.53237 -10.34367 -9.00734 -8.96745 -6.56515 0.33328 0.52079 0.65567 1.26613 1.37050 1.42050 1.52923 1.62742 1.79210 2.31859 2.60222 2.86263 2.95435 3.55381 3.66975 3.71857 3.75732 3.90785 4.03058 4.10000 4.19223 4.22860 4.34411 4.40364 4.52657 4.56700 4.57772 4.64457 4.73114 4.74248 4.80357 4.81681 4.86697 5.11775 5.23753 5.26119 5.30184 5.32279 5.43603 5.78989 5.86744 5.93124 6.37746 6.79325 7.04155 7.18632 8.45392 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011855 B = 0.004616 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.346530 B = 6064.613915 C = 7816.164650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.207 3.793 3 H 0.026 0.974 4 C -0.621 4.621 5 H 0.037 0.963 6 C 0.004 3.996 7 N -0.912 5.912 8 Si 1.069 2.931 9 H -0.269 1.269 10 H -0.267 1.267 11 H -0.252 1.252 12 O -0.354 6.354 13 C 0.462 3.538 14 O -0.523 6.523 15 C 0.163 3.837 16 H 0.133 0.867 17 C -0.067 4.067 18 S -0.220 6.220 19 C 0.158 3.842 20 N -0.599 5.599 21 C 0.663 3.337 22 O -0.564 6.564 23 O -0.353 6.353 24 C 0.127 3.873 25 C -0.179 4.179 26 C -0.130 4.130 27 C -0.180 4.180 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.261 0.739 32 H 0.159 0.841 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.133 0.867 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.632 5.315 25.576 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.153 3.847 3 H 0.044 0.956 4 C -0.658 4.658 5 H 0.055 0.945 6 C -0.198 4.198 7 N -0.546 5.546 8 Si 0.889 3.111 9 H -0.194 1.194 10 H -0.192 1.192 11 H -0.177 1.177 12 O -0.270 6.270 13 C 0.303 3.697 14 O -0.412 6.412 15 C 0.057 3.943 16 H 0.151 0.849 17 C -0.216 4.216 18 S 0.007 5.993 19 C -0.074 4.074 20 N -0.343 5.343 21 C 0.418 3.582 22 O -0.452 6.452 23 O -0.267 6.267 24 C 0.091 3.909 25 C -0.236 4.236 26 C -0.187 4.187 27 C -0.238 4.238 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.177 0.823 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.109 0.891 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.531 6.300 24.807 25.640 hybrid contribution -0.370 -0.984 -0.259 1.083 sum -1.901 5.316 24.547 25.188 Atomic orbital electron populations 1.22322 0.96638 1.01406 1.00685 1.20530 0.91863 0.92693 0.79627 0.95595 1.21989 1.42072 1.10198 0.91526 0.94461 1.26871 0.93232 1.08620 0.91039 1.70978 1.42659 1.08446 1.32475 0.83750 0.78923 0.70853 0.77536 1.19361 1.19218 1.17663 1.86468 1.76137 1.43253 1.21096 1.23469 0.74266 0.85938 0.86053 1.90577 1.48312 1.17961 1.84387 1.21384 0.93969 0.98613 0.80308 0.84902 1.24757 0.91548 1.09078 0.96169 1.88194 1.27507 1.78657 1.04965 1.24190 0.89459 1.05982 0.87788 1.46882 1.16438 1.59403 1.11621 1.17786 0.81315 0.77344 0.81793 1.91003 1.56679 1.63996 1.33570 1.86281 1.37844 1.62686 1.39928 1.22474 0.77283 0.92756 0.98348 1.22460 0.99438 0.98842 1.02860 1.21863 1.03410 0.99943 0.93504 1.22457 1.03607 0.99202 0.98500 0.91459 0.93224 0.93754 0.92943 0.82321 0.87521 0.86731 0.84947 0.91001 0.89092 0.92876 0.91133 0.87964 0.90308 0.93143 0.89072 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.55 9.24 71.98 0.66 -6.89 16 2 C 0.21 10.95 2.15 29.85 0.06 11.01 16 3 H 0.03 1.42 5.77 -2.39 -0.01 1.41 16 4 C -0.62 -36.68 9.13 25.60 0.23 -36.45 16 5 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 6 C 0.00 0.24 5.31 84.66 0.45 0.69 16 7 N -0.91 -56.12 13.70 21.45 0.29 -55.82 16 8 Si 1.07 50.85 26.50 68.60 1.82 52.66 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.25 -11.10 5.70 99.48 0.57 -10.54 16 12 O -0.35 -16.99 9.86 -51.43 -0.51 -17.50 16 13 C 0.46 18.93 5.28 71.24 0.38 19.30 16 14 O -0.52 -24.03 13.84 29.35 0.41 -23.62 16 15 C 0.16 4.72 3.34 45.14 0.15 4.87 16 16 H 0.13 3.51 8.14 -2.39 -0.02 3.49 16 17 C -0.07 -1.48 7.04 72.81 0.51 -0.97 16 18 S -0.22 -4.03 23.32 -56.49 -1.32 -5.35 16 19 C 0.16 2.81 7.29 127.66 0.93 3.74 16 20 N -0.60 -15.96 3.13 -936.93 -2.93 -18.89 16 21 C 0.66 20.77 6.92 129.79 0.90 21.67 16 22 O -0.56 -21.92 9.06 27.23 0.25 -21.67 16 23 O -0.35 -8.98 9.33 -55.46 -0.52 -9.50 16 24 C 0.13 2.78 1.13 -10.79 -0.01 2.76 16 25 C -0.18 -3.88 8.37 71.98 0.60 -3.27 16 26 C -0.13 -1.71 8.85 71.98 0.64 -1.07 16 27 C -0.18 -4.62 8.37 71.98 0.60 -4.01 16 28 H 0.07 3.24 5.12 -2.39 -0.01 3.22 16 29 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.04 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.26 16.16 8.73 -92.71 -0.81 15.35 16 32 H 0.16 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.11 2.50 8.10 -2.39 -0.02 2.48 16 34 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.13 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.57 5.88 -2.39 -0.01 1.56 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 1.77 5.88 -2.39 -0.01 1.76 16 43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -74.92 364.43 4.43 -70.49 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.82 Total: 17.80 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 6.11 Total: 11.38 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -2.64 Total: -74.71 kcal Atomic # 8 Polarization: -71.91 SS G_CDS: -0.37 Total: -72.28 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 1.82 Total: 52.66 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -1.32 Total: -5.35 kcal Total: -74.92 4.43 -70.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491858494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.507 kcal (2) G-P(sol) polarization free energy of solvation -74.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds