Wall clock time and date at job start Tue Mar 31 2020 17:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47279 * 2 1 4 4 C 1.50695 * 109.47420 * 120.00353 * 2 1 3 5 5 H 1.07999 * 120.00543 * 119.99826 * 4 2 1 6 6 C 1.37878 * 119.99826 * 299.99699 * 4 2 1 7 7 N 1.31510 * 120.00292 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99966 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47035 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46902 * 119.99939 * 8 6 4 11 11 H 1.48499 * 109.47297 * 240.00199 * 8 6 4 12 12 O 1.45203 * 109.46725 * 240.00192 * 2 1 3 13 13 C 1.34232 * 116.99975 * 89.99960 * 12 2 1 14 14 O 1.20820 * 119.99962 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99665 * 179.97438 * 13 12 2 16 16 H 1.08994 * 109.43128 * 341.61998 * 15 13 12 17 17 C 1.55394 * 109.47171 * 101.59911 * 15 13 12 18 18 S 1.84244 * 99.76686 * 160.38571 * 17 15 13 19 19 C 1.83566 * 94.86071 * 326.85118 * 18 17 15 20 20 N 1.46141 * 109.46592 * 221.65551 * 15 13 12 21 21 C 1.34774 * 122.49891 * 29.50200 * 20 15 13 22 22 O 1.21504 * 120.00011 * 355.63498 * 21 20 15 23 23 O 1.34634 * 119.99767 * 175.63803 * 21 20 15 24 24 C 1.45203 * 116.99935 * 179.97438 * 23 21 20 25 25 C 1.53002 * 109.46942 * 59.99774 * 24 23 21 26 26 C 1.52998 * 109.47003 * 179.97438 * 24 23 21 27 27 C 1.52995 * 109.47094 * 299.99704 * 24 23 21 28 28 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46894 * 299.99748 * 1 2 3 30 30 H 1.09000 * 109.47130 * 59.99482 * 1 2 3 31 31 H 0.96996 * 120.00678 * 179.97438 * 7 6 4 32 32 H 1.09002 * 111.34788 * 42.74719 * 17 15 13 33 33 H 1.09004 * 111.38657 * 278.03539 * 17 15 13 34 34 H 1.08994 * 110.33868 * 259.63468 * 19 18 17 35 35 H 1.08996 * 110.33520 * 137.38252 * 19 18 17 36 36 H 1.09003 * 109.47180 * 60.00174 * 25 24 23 37 37 H 1.09009 * 109.46833 * 180.02562 * 25 24 23 38 38 H 1.08995 * 109.47391 * 299.99942 * 25 24 23 39 39 H 1.09003 * 109.47301 * 60.00535 * 26 24 23 40 40 H 1.09009 * 109.47016 * 179.97438 * 26 24 23 41 41 H 1.09003 * 109.47395 * 299.99995 * 26 24 23 42 42 H 1.09009 * 109.47153 * 60.00164 * 27 24 23 43 43 H 1.08997 * 109.47071 * 179.97438 * 27 24 23 44 44 H 1.08999 * 109.47169 * 300.00313 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.1466 -2.2871 3.6036 10 1 3.1469 -0.1875 4.8163 11 1 1.1663 -1.5868 4.8160 12 8 2.0139 -0.6845 -1.1856 13 6 2.2170 0.0641 -2.2812 14 8 1.9981 1.2519 -2.2504 15 6 2.7191 -0.5770 -3.5492 16 1 3.1626 -1.5447 -3.3153 17 6 1.5336 -0.7750 -4.5342 18 16 2.4659 -0.9580 -6.1127 19 6 3.8166 0.1873 -5.6293 20 7 3.7265 0.2844 -4.1646 21 6 4.5180 1.1027 -3.4432 22 8 4.3555 1.2025 -2.2432 23 8 5.4887 1.8095 -4.0522 24 6 6.3023 2.6708 -3.2129 25 6 7.0120 1.8267 -2.1524 26 6 7.3439 3.3867 -4.0752 27 6 5.4088 3.7061 -2.5269 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.7083 1.1608 3.4844 32 1 0.8850 0.1008 -4.5556 33 1 0.9688 -1.6775 -4.3001 34 1 3.6643 1.1660 -6.0840 35 1 4.7833 -0.2217 -5.9231 36 1 7.6486 1.0892 -2.6412 37 1 7.6225 2.4735 -1.5220 38 1 6.2703 1.3164 -1.5380 39 1 6.8386 3.9881 -4.8310 40 1 7.9544 4.0337 -3.4452 41 1 7.9804 2.6489 -4.5637 42 1 4.6670 3.1957 -1.9125 43 1 6.0196 4.3524 -1.8965 44 1 4.9032 4.3074 -3.2825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491858495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:04 Heat of formation + Delta-G solvation = -147.769729 kcal Electronic energy + Delta-G solvation = -28304.622998 eV Core-core repulsion = 24349.535645 eV Total energy + Delta-G solvation = -3955.087353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05834 -39.59949 -37.74993 -35.99707 -35.47306 -34.02695 -33.21930 -31.37246 -29.50388 -27.64977 -27.39229 -27.31564 -25.30126 -24.84918 -22.90841 -21.06949 -20.04661 -19.21450 -18.09628 -17.46260 -17.29534 -16.52216 -16.24398 -16.13013 -15.33302 -15.01269 -14.95968 -14.63799 -14.46537 -14.13242 -13.97126 -13.60351 -13.35775 -12.92599 -12.72334 -12.57230 -12.45098 -12.23396 -12.01827 -11.92248 -11.87172 -11.84695 -11.40187 -11.33826 -11.12489 -11.06454 -10.86923 -10.75281 -10.36092 -10.31882 -10.25126 -9.87103 -9.66155 -9.48352 -9.06388 -8.84403 -8.44777 -8.12652 -6.14099 -4.19762 1.28387 1.62313 1.76828 2.84588 2.95066 3.26026 3.31721 3.35536 3.42760 3.79485 4.18819 4.36057 4.68913 4.72577 4.73421 4.87229 4.88549 4.98168 5.16563 5.19416 5.33188 5.40419 5.46067 5.50771 5.61852 5.67790 5.72038 5.87945 5.89829 5.96529 6.33262 6.38310 6.49632 6.66667 6.89846 6.93706 7.08944 7.21269 7.64329 7.78634 7.98153 8.18761 8.30472 8.66800 8.92677 9.44837 10.93617 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.004561 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.389470 B = 6137.118921 C = 7981.751084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.221 3.779 3 H 0.049 0.951 4 C -0.515 4.515 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.910 3.090 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.282 1.282 12 O -0.352 6.352 13 C 0.468 3.532 14 O -0.495 6.495 15 C 0.155 3.845 16 H 0.119 0.881 17 C -0.064 4.064 18 S -0.252 6.252 19 C 0.163 3.837 20 N -0.597 5.597 21 C 0.662 3.338 22 O -0.517 6.517 23 O -0.361 6.361 24 C 0.137 3.863 25 C -0.185 4.185 26 C -0.138 4.138 27 C -0.185 4.185 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.014 0.986 31 H 0.265 0.735 32 H 0.111 0.889 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.588 0.796 -17.069 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.169 3.831 3 H 0.067 0.933 4 C -0.553 4.553 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.737 3.263 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.268 6.268 13 C 0.306 3.694 14 O -0.383 6.383 15 C 0.049 3.951 16 H 0.136 0.864 17 C -0.213 4.213 18 S -0.026 6.026 19 C -0.070 4.070 20 N -0.342 5.342 21 C 0.416 3.584 22 O -0.401 6.401 23 O -0.276 6.276 24 C 0.100 3.900 25 C -0.242 4.242 26 C -0.195 4.195 27 C -0.242 4.242 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.157 0.843 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.259 0.734 -17.459 19.328 hybrid contribution 0.449 0.466 1.800 1.913 sum 8.708 1.200 -15.659 17.958 Atomic orbital electron populations 1.22181 0.97716 1.00014 1.01362 1.20616 0.90959 0.94162 0.77372 0.93313 1.21045 1.32112 1.13283 0.88860 0.91374 1.24863 0.95013 0.95111 0.98979 1.69905 1.36321 1.22674 1.23936 0.86245 0.78607 0.79521 0.81918 1.19493 1.20800 1.20748 1.86428 1.75951 1.43449 1.20929 1.22270 0.75638 0.85983 0.85483 1.90600 1.47575 1.16129 1.84008 1.21297 0.88264 0.94770 0.90763 0.86380 1.24729 0.97734 1.08403 0.90436 1.88170 1.26642 1.61260 1.26482 1.23875 1.00067 1.01936 0.81131 1.46750 1.37155 1.44443 1.05867 1.17603 0.78939 0.78071 0.83823 1.91097 1.70736 1.65714 1.12572 1.86243 1.43543 1.55505 1.42350 1.22120 0.89252 0.88626 0.89957 1.22531 1.01808 1.00652 0.99210 1.21844 0.97323 1.00204 1.00101 1.22524 1.01320 0.98719 1.01661 0.94448 0.88237 0.96657 0.92552 0.87018 0.84264 0.88106 0.87378 0.92295 0.91031 0.89013 0.91578 0.90107 0.91599 0.88694 0.91163 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.33 37.16 0.35 -3.60 16 2 C 0.22 6.07 2.56 -27.89 -0.07 6.00 16 3 H 0.05 1.51 7.16 -51.93 -0.37 1.14 16 4 C -0.51 -14.79 8.90 -34.44 -0.31 -15.10 16 5 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.73 11.32 55.43 0.63 -25.10 16 8 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 O -0.35 -8.51 9.86 -39.26 -0.39 -8.90 16 13 C 0.47 9.91 5.00 36.01 0.18 10.09 16 14 O -0.50 -11.92 14.11 -26.56 -0.37 -12.29 16 15 C 0.15 2.38 3.36 -68.01 -0.23 2.16 16 16 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 17 C -0.06 -0.76 7.04 38.43 0.27 -0.49 16 18 S -0.25 -2.71 23.32 -107.50 -2.51 -5.21 16 19 C 0.16 1.77 7.29 60.15 0.44 2.21 16 20 N -0.60 -8.83 3.13 -174.67 -0.55 -9.37 16 21 C 0.66 11.33 7.28 54.05 0.39 11.72 16 22 O -0.52 -10.90 8.67 -27.13 -0.24 -11.13 16 23 O -0.36 -5.18 9.32 -40.31 -0.38 -5.56 16 24 C 0.14 1.76 1.13 -90.62 -0.10 1.66 16 25 C -0.18 -2.43 8.37 37.16 0.31 -2.12 16 26 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 27 C -0.19 -2.62 8.37 37.15 0.31 -2.31 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.11 1.39 8.10 -51.93 -0.42 0.97 16 33 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.09 1.55 5.88 -51.93 -0.31 1.25 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 1.77 5.88 -51.92 -0.31 1.46 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -33.37 368.42 -8.25 -41.62 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.76 Total: 2.98 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 1.78 Total: 10.95 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.08 Total: -34.48 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.37 Total: -37.89 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -2.51 Total: -5.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.37 -8.25 -41.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491858495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.154 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds