Wall clock time and date at job start Tue Mar 31 2020 17:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47279 * 2 1 4 4 C 1.50695 * 109.47420 * 120.00353 * 2 1 3 5 5 H 1.07999 * 120.00543 * 119.99826 * 4 2 1 6 6 C 1.37878 * 119.99826 * 299.99699 * 4 2 1 7 7 N 1.31510 * 120.00292 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99966 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47035 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46902 * 119.99939 * 8 6 4 11 11 H 1.48499 * 109.47297 * 240.00199 * 8 6 4 12 12 O 1.45203 * 109.46725 * 240.00192 * 2 1 3 13 13 C 1.34232 * 116.99975 * 89.99960 * 12 2 1 14 14 O 1.20820 * 119.99962 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99665 * 179.97438 * 13 12 2 16 16 H 1.08994 * 109.43128 * 341.61998 * 15 13 12 17 17 C 1.55394 * 109.47171 * 101.59911 * 15 13 12 18 18 S 1.84244 * 99.76686 * 160.38571 * 17 15 13 19 19 C 1.83566 * 94.86071 * 326.85118 * 18 17 15 20 20 N 1.46141 * 109.46592 * 221.65551 * 15 13 12 21 21 C 1.34774 * 122.49891 * 29.50200 * 20 15 13 22 22 O 1.21504 * 120.00011 * 355.63498 * 21 20 15 23 23 O 1.34634 * 119.99767 * 175.63803 * 21 20 15 24 24 C 1.45203 * 116.99935 * 179.97438 * 23 21 20 25 25 C 1.53002 * 109.46942 * 59.99774 * 24 23 21 26 26 C 1.52998 * 109.47003 * 179.97438 * 24 23 21 27 27 C 1.52995 * 109.47094 * 299.99704 * 24 23 21 28 28 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46894 * 299.99748 * 1 2 3 30 30 H 1.09000 * 109.47130 * 59.99482 * 1 2 3 31 31 H 0.96996 * 120.00678 * 179.97438 * 7 6 4 32 32 H 1.09002 * 111.34788 * 42.74719 * 17 15 13 33 33 H 1.09004 * 111.38657 * 278.03539 * 17 15 13 34 34 H 1.08994 * 110.33868 * 259.63468 * 19 18 17 35 35 H 1.08996 * 110.33520 * 137.38252 * 19 18 17 36 36 H 1.09003 * 109.47180 * 60.00174 * 25 24 23 37 37 H 1.09009 * 109.46833 * 180.02562 * 25 24 23 38 38 H 1.08995 * 109.47391 * 299.99942 * 25 24 23 39 39 H 1.09003 * 109.47301 * 60.00535 * 26 24 23 40 40 H 1.09009 * 109.47016 * 179.97438 * 26 24 23 41 41 H 1.09003 * 109.47395 * 299.99995 * 26 24 23 42 42 H 1.09009 * 109.47153 * 60.00164 * 27 24 23 43 43 H 1.08997 * 109.47071 * 179.97438 * 27 24 23 44 44 H 1.08999 * 109.47169 * 300.00313 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.1466 -2.2871 3.6036 10 1 3.1469 -0.1875 4.8163 11 1 1.1663 -1.5868 4.8160 12 8 2.0139 -0.6845 -1.1856 13 6 2.2170 0.0641 -2.2812 14 8 1.9981 1.2519 -2.2504 15 6 2.7191 -0.5770 -3.5492 16 1 3.1626 -1.5447 -3.3153 17 6 1.5336 -0.7750 -4.5342 18 16 2.4659 -0.9580 -6.1127 19 6 3.8166 0.1873 -5.6293 20 7 3.7265 0.2844 -4.1646 21 6 4.5180 1.1027 -3.4432 22 8 4.3555 1.2025 -2.2432 23 8 5.4887 1.8095 -4.0522 24 6 6.3023 2.6708 -3.2129 25 6 7.0120 1.8267 -2.1524 26 6 7.3439 3.3867 -4.0752 27 6 5.4088 3.7061 -2.5269 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.7083 1.1608 3.4844 32 1 0.8850 0.1008 -4.5556 33 1 0.9688 -1.6775 -4.3001 34 1 3.6643 1.1660 -6.0840 35 1 4.7833 -0.2217 -5.9231 36 1 7.6486 1.0892 -2.6412 37 1 7.6225 2.4735 -1.5220 38 1 6.2703 1.3164 -1.5380 39 1 6.8386 3.9881 -4.8310 40 1 7.9544 4.0337 -3.4452 41 1 7.9804 2.6489 -4.5637 42 1 4.6670 3.1957 -1.9125 43 1 6.0196 4.3524 -1.8965 44 1 4.9032 4.3074 -3.2825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491858495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:03 Heat of formation + Delta-G solvation = -168.307015 kcal Electronic energy + Delta-G solvation = -28305.513561 eV Core-core repulsion = 24349.535645 eV Total energy + Delta-G solvation = -3955.977917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.38403 -41.17788 -39.10257 -37.42748 -37.20418 -35.35094 -35.11475 -32.60403 -31.53511 -28.66181 -28.43778 -28.29269 -27.47565 -26.12453 -24.39840 -22.69764 -21.54725 -20.57438 -19.55190 -18.85642 -18.65442 -18.34896 -17.64941 -17.35522 -16.99373 -16.59626 -16.31523 -16.13494 -15.61140 -15.53778 -15.07989 -14.79660 -14.64290 -14.51846 -14.16116 -13.88600 -13.66655 -13.41358 -13.29003 -13.23065 -13.11645 -13.02853 -12.96396 -12.89978 -12.82967 -12.55452 -12.43129 -12.37654 -12.16610 -11.93574 -11.60139 -11.46726 -11.30120 -11.08560 -10.98216 -10.61771 -10.31114 -8.97090 -8.29939 -6.46189 0.36839 0.53005 0.68523 1.36865 1.40054 1.40832 1.52989 1.55261 1.90604 2.36835 2.61778 2.99262 3.01206 3.65539 3.69794 3.73583 3.77868 3.88970 4.03877 4.14019 4.22414 4.35962 4.41740 4.53282 4.54642 4.63756 4.70466 4.73400 4.76764 4.78058 4.82730 4.85948 5.11114 5.16422 5.24052 5.28264 5.31363 5.47155 5.63621 5.85286 5.93117 6.09476 6.58438 6.92429 7.05786 7.25162 8.78249 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.004561 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.389470 B = 6137.118921 C = 7981.751084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.227 3.773 3 H -0.003 1.003 4 C -0.545 4.545 5 H 0.063 0.937 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.982 3.018 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.267 1.267 12 O -0.360 6.360 13 C 0.463 3.537 14 O -0.530 6.530 15 C 0.161 3.839 16 H 0.134 0.866 17 C -0.064 4.064 18 S -0.216 6.216 19 C 0.156 3.844 20 N -0.598 5.598 21 C 0.656 3.344 22 O -0.564 6.564 23 O -0.350 6.350 24 C 0.128 3.872 25 C -0.181 4.181 26 C -0.128 4.128 27 C -0.181 4.181 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.024 0.976 31 H 0.270 0.730 32 H 0.104 0.896 33 H 0.165 0.835 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.090 0.910 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.949 -0.233 -18.792 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.174 3.826 3 H 0.015 0.985 4 C -0.582 4.582 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.805 3.195 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.192 1.192 12 O -0.276 6.276 13 C 0.304 3.696 14 O -0.419 6.419 15 C 0.055 3.945 16 H 0.152 0.848 17 C -0.213 4.213 18 S 0.011 5.989 19 C -0.075 4.075 20 N -0.343 5.343 21 C 0.410 3.590 22 O -0.452 6.452 23 O -0.265 6.265 24 C 0.092 3.908 25 C -0.238 4.238 26 C -0.185 4.185 27 C -0.238 4.238 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.183 0.817 34 H 0.130 0.870 35 H 0.151 0.849 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.621 -0.301 -19.254 21.526 hybrid contribution 0.064 0.872 2.251 2.415 sum 9.685 0.570 -17.002 19.576 Atomic orbital electron populations 1.21971 0.96362 1.00634 1.00797 1.20236 0.91914 0.91609 0.78816 0.98470 1.21298 1.33175 1.13683 0.90080 0.91828 1.25823 0.94739 0.95678 1.02094 1.70027 1.36745 1.23732 1.25075 0.85154 0.78472 0.78385 0.77505 1.18794 1.20284 1.19163 1.86402 1.76458 1.43569 1.21207 1.23382 0.74366 0.85753 0.86138 1.90575 1.48895 1.17786 1.84644 1.21477 0.89862 0.94521 0.88620 0.84832 1.24755 0.96516 1.09446 0.90577 1.88116 1.25631 1.60730 1.24437 1.24184 1.01723 1.03194 0.78434 1.46894 1.36205 1.43661 1.07511 1.17916 0.79359 0.78238 0.83486 1.91101 1.72007 1.67199 1.14883 1.86269 1.42863 1.55217 1.42111 1.22471 0.89452 0.88076 0.90789 1.22473 1.00944 1.01166 0.99186 1.21856 0.96236 1.00444 0.99957 1.22459 1.00803 0.99064 1.01486 0.93024 0.90263 0.95656 0.92044 0.87701 0.81725 0.86980 0.84874 0.90781 0.89139 0.93495 0.90772 0.87997 0.90182 0.93878 0.89121 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.38 9.33 71.98 0.67 -6.71 16 2 C 0.23 13.17 2.56 29.85 0.08 13.25 16 3 H 0.00 -0.17 7.16 -2.39 -0.02 -0.19 16 4 C -0.54 -32.45 8.90 25.60 0.23 -32.22 16 5 H 0.06 3.74 7.81 -2.91 -0.02 3.72 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.92 -54.57 11.32 21.45 0.24 -54.33 16 8 Si 0.98 44.43 29.54 68.60 2.03 46.46 16 9 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 12 O -0.36 -18.24 9.86 -51.43 -0.51 -18.75 16 13 C 0.46 20.48 5.00 71.24 0.36 20.83 16 14 O -0.53 -27.14 14.11 29.45 0.42 -26.72 16 15 C 0.16 4.93 3.36 45.14 0.15 5.08 16 16 H 0.13 3.68 8.14 -2.39 -0.02 3.66 16 17 C -0.06 -1.43 7.04 72.81 0.51 -0.92 16 18 S -0.22 -4.02 23.32 -56.49 -1.32 -5.34 16 19 C 0.16 3.03 7.29 127.66 0.93 3.96 16 20 N -0.60 -17.42 3.13 -936.95 -2.93 -20.35 16 21 C 0.66 23.04 7.28 129.79 0.94 23.98 16 22 O -0.56 -25.49 8.67 27.34 0.24 -25.25 16 23 O -0.35 -9.89 9.32 -55.43 -0.52 -10.41 16 24 C 0.13 3.22 1.13 -10.80 -0.01 3.21 16 25 C -0.18 -4.76 8.37 71.98 0.60 -4.16 16 26 C -0.13 -1.94 8.85 71.98 0.64 -1.31 16 27 C -0.18 -5.29 8.37 71.98 0.60 -4.69 16 28 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.08 4.50 6.07 -2.39 -0.01 4.49 16 30 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.10 2.53 8.10 -2.39 -0.02 2.51 16 33 H 0.17 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.05 1.69 5.88 -2.39 -0.01 1.68 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 1.15 8.14 -2.38 -0.02 1.14 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.04 1.74 5.88 -2.38 -0.01 1.72 16 43 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -78.18 368.42 4.79 -73.39 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 1.00 Total: 19.63 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 6.15 Total: 21.67 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -2.69 Total: -74.68 kcal Atomic # 8 Polarization: -80.76 SS G_CDS: -0.37 Total: -81.13 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: -4.02 SS G_CDS: -1.32 Total: -5.34 kcal Total: -78.18 4.79 -73.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491858495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.918 kcal (2) G-P(sol) polarization free energy of solvation -78.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds