Wall clock time and date at job start Tue Mar 31 2020 17:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.19288 * 2 1 4 4 C 1.54477 * 110.22227 * 238.04068 * 2 1 3 5 5 C 1.54677 * 101.62627 * 215.65798 * 4 2 1 6 6 H 1.08996 * 110.65654 * 143.18525 * 5 4 2 7 7 N 1.46508 * 110.53051 * 265.89012 * 5 4 2 8 8 C 1.34770 * 119.99955 * 200.97101 * 7 5 4 9 9 O 1.21725 * 120.00352 * 0.02562 * 8 7 5 10 10 C 1.46256 * 120.00006 * 180.02562 * 8 7 5 11 11 C 1.35022 * 119.99920 * 179.97438 * 10 8 7 12 12 C 1.46965 * 119.99702 * 179.97438 * 11 10 8 13 13 C 1.40032 * 120.09822 * 180.02562 * 12 11 10 14 14 C 1.37595 * 119.89556 * 179.97438 * 13 12 11 15 15 C 1.39178 * 120.10194 * 359.97438 * 14 13 12 16 16 O 1.35573 * 119.89708 * 179.97438 * 15 14 13 17 17 C 1.34784 * 116.99926 * 5.55554 * 16 15 14 18 18 H 1.07999 * 120.00195 * 354.94070 * 17 16 15 19 19 C 1.38722 * 119.99766 * 174.66702 * 17 16 15 20 20 N 1.31501 * 120.00042 * 0.27264 * 19 17 16 21 21 Si 1.86800 * 119.99863 * 180.27402 * 19 17 16 22 22 H 1.48502 * 109.46865 * 90.00086 * 21 19 17 23 23 H 1.48504 * 109.47052 * 210.00034 * 21 19 17 24 24 H 1.48500 * 109.46917 * 330.00252 * 21 19 17 25 25 C 1.39170 * 120.20163 * 0.25803 * 15 14 13 26 26 C 1.37603 * 120.10589 * 359.48487 * 25 15 14 27 27 C 1.51325 * 103.94331 * 24.50715 * 5 4 2 28 28 O 1.20820 * 124.95324 * 163.90856 * 27 5 4 29 29 O 1.33831 * 110.09531 * 343.94345 * 27 5 4 30 30 H 1.08994 * 109.47458 * 299.59087 * 1 2 3 31 31 H 1.09002 * 109.47406 * 59.59307 * 1 2 3 32 32 H 1.09004 * 109.47575 * 179.58979 * 1 2 3 33 33 H 1.09000 * 110.99755 * 97.56952 * 4 2 1 34 34 H 1.09000 * 110.99783 * 333.73876 * 4 2 1 35 35 H 0.96997 * 119.99735 * 20.98332 * 7 5 4 36 36 H 1.07999 * 120.00108 * 0.02562 * 10 8 7 37 37 H 1.08004 * 120.00494 * 0.02562 * 11 10 8 38 38 H 1.08001 * 120.04647 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.94579 * 180.02562 * 14 13 12 40 40 H 0.96993 * 120.00415 * 179.97438 * 20 19 17 41 41 H 1.08004 * 119.95025 * 179.74644 * 25 15 14 42 42 H 1.07991 * 120.05491 * 180.27393 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9062 1.0230 0.0000 4 6 2.0640 -0.7673 -1.2298 5 6 3.3268 -1.4462 -0.6495 6 1 3.4574 -2.4417 -1.0736 7 7 4.5131 -0.6233 -0.8988 8 6 5.7390 -1.1824 -0.8705 9 8 5.8608 -2.3711 -0.6382 10 6 6.9233 -0.3609 -1.1188 11 6 8.1516 -0.9209 -1.0899 12 6 9.3415 -0.0955 -1.3400 13 6 10.6163 -0.6742 -1.3111 14 6 11.7275 0.1025 -1.5464 15 6 11.5859 1.4610 -1.8134 16 8 12.6836 2.2224 -2.0441 17 6 13.8680 1.5830 -2.1144 18 1 13.9233 0.5244 -1.9081 19 6 15.0152 2.2837 -2.4572 20 7 14.9479 3.5727 -2.7084 21 14 16.6554 1.3960 -2.5621 22 1 16.8543 0.8850 -3.9422 23 1 17.7510 2.3385 -2.2205 24 1 16.6648 0.2589 -1.6071 25 6 10.3212 2.0414 -1.8384 26 6 9.2038 1.2717 -1.6095 27 6 3.0442 -1.5342 0.8345 28 8 3.6438 -2.2373 1.6129 29 8 2.0326 -0.7203 1.1590 30 1 -0.3634 0.5074 0.8936 31 1 -0.3634 0.5201 -0.8863 32 1 -0.3634 -1.0276 -0.0074 33 1 2.3248 -0.0809 -2.0354 34 1 1.3426 -1.5102 -1.5701 35 1 4.4161 0.3238 -1.0841 36 1 6.8154 0.6938 -1.3245 37 1 8.2596 -1.9756 -0.8838 38 1 10.7270 -1.7286 -1.1052 39 1 12.7111 -0.3431 -1.5247 40 1 15.7500 4.0627 -2.9478 41 1 10.2163 3.0969 -2.0419 42 1 8.2226 1.7220 -1.6335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492927573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:35 Heat of formation + Delta-G solvation = -103.312162 kcal Electronic energy + Delta-G solvation = -26193.500461 eV Core-core repulsion = 22104.896981 eV Total energy + Delta-G solvation = -4088.603480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -41.63108 -39.47985 -39.10508 -37.88965 -36.94009 -35.26012 -33.27920 -32.98786 -32.33035 -30.48117 -30.31816 -28.15643 -25.77608 -25.32814 -23.60262 -22.52416 -22.20787 -21.38769 -20.91035 -19.47778 -18.26119 -17.96210 -17.35042 -17.10215 -16.97664 -16.27013 -15.84763 -15.07587 -14.83866 -14.81842 -14.45989 -14.37053 -14.14140 -14.01942 -13.84927 -13.53655 -13.39410 -13.07039 -12.90850 -12.76423 -12.62407 -12.33555 -11.97212 -11.81691 -11.75961 -11.71145 -11.15147 -11.11211 -10.99662 -10.94538 -10.71268 -10.55994 -9.93325 -9.64754 -9.53007 -9.31910 -8.88873 -8.41222 -7.15428 -6.67884 -4.22524 0.99935 1.72805 2.10968 2.48233 2.63026 3.02418 3.03277 3.05754 3.08235 3.34093 3.58767 3.68899 3.80323 3.91771 4.23647 4.48001 4.50151 4.79669 4.82706 4.89389 4.95514 5.01145 5.08597 5.16901 5.23168 5.26431 5.49432 5.50202 5.56782 5.63411 5.97095 6.00789 6.08149 6.38985 6.43027 6.44767 6.56338 6.75778 6.88486 7.09664 7.17416 7.20725 7.24171 7.32795 7.60835 7.77504 8.16970 8.76884 9.43385 10.48632 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.033648 B = 0.001741 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.936370 B =16081.312521 C =16560.968282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.077 3.923 3 H 0.101 0.899 4 C -0.160 4.160 5 C 0.089 3.911 6 H 0.129 0.871 7 N -0.720 5.720 8 C 0.556 3.444 9 O -0.538 6.538 10 C -0.287 4.287 11 C 0.046 3.954 12 C -0.202 4.202 13 C -0.033 4.033 14 C -0.242 4.242 15 C 0.167 3.833 16 O -0.161 6.161 17 C -0.393 4.393 18 H 0.098 0.902 19 C 0.042 3.958 20 N -0.851 5.851 21 Si 0.945 3.055 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.265 1.265 25 C -0.200 4.200 26 C -0.041 4.041 27 C 0.468 3.532 28 O -0.433 6.433 29 O -0.342 6.342 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.406 0.594 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.132 0.868 40 H 0.274 0.726 41 H 0.121 0.879 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.819 -4.123 -0.205 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 H 0.119 0.881 4 C -0.198 4.198 5 C -0.019 4.019 6 H 0.147 0.853 7 N -0.376 5.376 8 C 0.349 3.651 9 O -0.416 6.416 10 C -0.308 4.308 11 C 0.026 3.974 12 C -0.203 4.203 13 C -0.051 4.051 14 C -0.262 4.262 15 C 0.111 3.889 16 O -0.062 6.062 17 C -0.469 4.469 18 H 0.115 0.885 19 C -0.165 4.165 20 N -0.484 5.484 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.189 1.189 25 C -0.219 4.219 26 C -0.060 4.060 27 C 0.304 3.696 28 O -0.313 6.313 29 O -0.258 6.258 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.241 0.759 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.149 0.851 40 H 0.084 0.916 41 H 0.139 0.861 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -24.297 -4.825 0.455 24.776 hybrid contribution 0.765 0.129 -0.250 0.816 sum -23.532 -4.696 0.204 23.997 Atomic orbital electron populations 1.22004 0.91886 1.03762 1.03674 1.23672 0.96271 0.95923 0.82001 0.88070 1.23420 0.96371 1.01566 0.98466 1.22149 0.86873 0.99667 0.93175 0.85328 1.45664 1.04646 1.12441 1.74877 1.18553 0.83198 0.87720 0.75613 1.90834 1.86292 1.16016 1.48472 1.22301 0.91645 1.00152 1.16679 1.22320 0.91115 0.98676 0.85272 1.18445 0.92264 0.93848 1.15701 1.21002 0.91380 0.98475 0.94275 1.21105 0.99457 0.94212 1.11393 1.19620 0.88071 0.89955 0.91272 1.83903 1.13125 1.34671 1.74491 1.21492 0.81879 0.94914 1.48579 0.88487 1.25403 0.99470 0.95843 0.95735 1.70005 1.30359 1.07050 1.40938 0.85640 0.79387 0.78865 0.79211 1.19603 1.20028 1.18922 1.20146 0.89880 1.00333 1.11574 1.20868 0.97201 0.92527 0.95375 1.23536 0.77571 0.77423 0.91040 1.90776 1.46880 1.35779 1.57832 1.86817 1.47995 1.53407 1.37620 0.90941 0.89841 0.91304 0.87214 0.87560 0.75893 0.85700 0.85823 0.86747 0.85076 0.91555 0.86106 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.45 9.53 37.16 0.35 -0.09 16 2 C 0.08 0.35 4.26 -25.96 -0.11 0.24 16 3 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 4 C -0.16 -0.59 6.30 -25.07 -0.16 -0.75 16 5 C 0.09 0.77 3.24 -67.89 -0.22 0.55 16 6 H 0.13 1.25 7.67 -51.93 -0.40 0.85 16 7 N -0.72 -6.72 5.13 -55.21 -0.28 -7.00 16 8 C 0.56 7.63 7.73 -13.04 -0.10 7.52 16 9 O -0.54 -9.53 15.94 5.17 0.08 -9.45 16 10 C -0.29 -3.78 9.41 -37.50 -0.35 -4.13 16 11 C 0.05 0.69 9.45 -37.19 -0.35 0.34 16 12 C -0.20 -3.39 5.87 -105.02 -0.62 -4.00 16 13 C -0.03 -0.58 9.78 -39.14 -0.38 -0.97 16 14 C -0.24 -4.97 9.14 -39.47 -0.36 -5.34 16 15 C 0.17 3.81 6.66 -38.89 -0.26 3.55 16 16 O -0.16 -4.33 9.74 0.73 0.01 -4.33 16 17 C -0.39 -10.37 9.48 30.91 0.29 -10.07 16 18 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.85 -23.62 13.67 55.48 0.76 -22.86 16 21 Si 0.95 19.39 29.55 -169.99 -5.02 14.37 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 25 C -0.20 -3.93 9.97 -39.47 -0.39 -4.32 16 26 C -0.04 -0.69 9.40 -39.15 -0.37 -1.06 16 27 C 0.47 5.68 8.28 36.31 0.30 5.98 16 28 O -0.43 -7.39 18.00 -18.43 -0.33 -7.73 16 29 O -0.34 -3.33 10.63 -37.89 -0.40 -3.74 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.11 0.18 8.03 -51.93 -0.42 -0.24 16 34 H 0.11 0.24 7.91 -51.93 -0.41 -0.17 16 35 H 0.41 2.39 8.55 -40.82 -0.35 2.04 16 36 H 0.13 1.35 6.07 -52.49 -0.32 1.03 16 37 H 0.12 1.87 7.52 -52.48 -0.39 1.48 16 38 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.13 2.67 5.62 -52.49 -0.29 2.37 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 41 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 42 H 0.12 1.56 6.16 -52.49 -0.32 1.23 16 LS Contribution 367.65 15.07 5.54 5.54 Total: -1.00 -34.86 367.65 -7.32 -42.18 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.85 Total: 4.55 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.82 Total: -11.55 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.48 Total: -29.86 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.64 Total: -25.23 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.86 -7.32 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492927573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.128 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds