Wall clock time and date at job start Tue Mar 31 2020 17:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.19288 * 2 1 4 4 C 1.54477 * 110.22227 * 238.04068 * 2 1 3 5 5 C 1.54677 * 101.62627 * 215.65798 * 4 2 1 6 6 H 1.08996 * 110.65654 * 143.18525 * 5 4 2 7 7 N 1.46508 * 110.53051 * 265.89012 * 5 4 2 8 8 C 1.34770 * 119.99955 * 200.97101 * 7 5 4 9 9 O 1.21725 * 120.00352 * 0.02562 * 8 7 5 10 10 C 1.46256 * 120.00006 * 180.02562 * 8 7 5 11 11 C 1.35022 * 119.99920 * 179.97438 * 10 8 7 12 12 C 1.46965 * 119.99702 * 179.97438 * 11 10 8 13 13 C 1.40032 * 120.09822 * 180.02562 * 12 11 10 14 14 C 1.37595 * 119.89556 * 179.97438 * 13 12 11 15 15 C 1.39178 * 120.10194 * 359.97438 * 14 13 12 16 16 O 1.35573 * 119.89708 * 179.97438 * 15 14 13 17 17 C 1.34784 * 116.99926 * 5.55554 * 16 15 14 18 18 H 1.07999 * 120.00195 * 354.94070 * 17 16 15 19 19 C 1.38722 * 119.99766 * 174.66702 * 17 16 15 20 20 N 1.31501 * 120.00042 * 0.27264 * 19 17 16 21 21 Si 1.86800 * 119.99863 * 180.27402 * 19 17 16 22 22 H 1.48502 * 109.46865 * 90.00086 * 21 19 17 23 23 H 1.48504 * 109.47052 * 210.00034 * 21 19 17 24 24 H 1.48500 * 109.46917 * 330.00252 * 21 19 17 25 25 C 1.39170 * 120.20163 * 0.25803 * 15 14 13 26 26 C 1.37603 * 120.10589 * 359.48487 * 25 15 14 27 27 C 1.51325 * 103.94331 * 24.50715 * 5 4 2 28 28 O 1.20820 * 124.95324 * 163.90856 * 27 5 4 29 29 O 1.33831 * 110.09531 * 343.94345 * 27 5 4 30 30 H 1.08994 * 109.47458 * 299.59087 * 1 2 3 31 31 H 1.09002 * 109.47406 * 59.59307 * 1 2 3 32 32 H 1.09004 * 109.47575 * 179.58979 * 1 2 3 33 33 H 1.09000 * 110.99755 * 97.56952 * 4 2 1 34 34 H 1.09000 * 110.99783 * 333.73876 * 4 2 1 35 35 H 0.96997 * 119.99735 * 20.98332 * 7 5 4 36 36 H 1.07999 * 120.00108 * 0.02562 * 10 8 7 37 37 H 1.08004 * 120.00494 * 0.02562 * 11 10 8 38 38 H 1.08001 * 120.04647 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.94579 * 180.02562 * 14 13 12 40 40 H 0.96993 * 120.00415 * 179.97438 * 20 19 17 41 41 H 1.08004 * 119.95025 * 179.74644 * 25 15 14 42 42 H 1.07991 * 120.05491 * 180.27393 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9062 1.0230 0.0000 4 6 2.0640 -0.7673 -1.2298 5 6 3.3268 -1.4462 -0.6495 6 1 3.4574 -2.4417 -1.0736 7 7 4.5131 -0.6233 -0.8988 8 6 5.7390 -1.1824 -0.8705 9 8 5.8608 -2.3711 -0.6382 10 6 6.9233 -0.3609 -1.1188 11 6 8.1516 -0.9209 -1.0899 12 6 9.3415 -0.0955 -1.3400 13 6 10.6163 -0.6742 -1.3111 14 6 11.7275 0.1025 -1.5464 15 6 11.5859 1.4610 -1.8134 16 8 12.6836 2.2224 -2.0441 17 6 13.8680 1.5830 -2.1144 18 1 13.9233 0.5244 -1.9081 19 6 15.0152 2.2837 -2.4572 20 7 14.9479 3.5727 -2.7084 21 14 16.6554 1.3960 -2.5621 22 1 16.8543 0.8850 -3.9422 23 1 17.7510 2.3385 -2.2205 24 1 16.6648 0.2589 -1.6071 25 6 10.3212 2.0414 -1.8384 26 6 9.2038 1.2717 -1.6095 27 6 3.0442 -1.5342 0.8345 28 8 3.6438 -2.2373 1.6129 29 8 2.0326 -0.7203 1.1590 30 1 -0.3634 0.5074 0.8936 31 1 -0.3634 0.5201 -0.8863 32 1 -0.3634 -1.0276 -0.0074 33 1 2.3248 -0.0809 -2.0354 34 1 1.3426 -1.5102 -1.5701 35 1 4.4161 0.3238 -1.0841 36 1 6.8154 0.6938 -1.3245 37 1 8.2596 -1.9756 -0.8838 38 1 10.7270 -1.7286 -1.1052 39 1 12.7111 -0.3431 -1.5247 40 1 15.7500 4.0627 -2.9478 41 1 10.2163 3.0969 -2.0419 42 1 8.2226 1.7220 -1.6335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492927573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:34 Heat of formation + Delta-G solvation = -127.211717 kcal Electronic energy + Delta-G solvation = -26194.536823 eV Core-core repulsion = 22104.896981 eV Total energy + Delta-G solvation = -4089.639842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.39159 -40.88686 -40.40280 -38.83639 -38.50704 -36.15297 -34.76021 -34.03931 -33.50358 -31.97217 -31.07601 -29.47570 -27.51419 -25.95051 -24.81971 -23.74388 -23.10090 -22.45275 -21.83748 -20.78609 -19.80378 -18.93433 -18.61257 -18.40627 -17.92587 -17.08052 -16.73302 -16.44788 -16.36105 -15.97296 -15.76373 -15.60926 -15.41028 -15.05209 -14.91633 -14.77678 -14.59705 -14.11368 -13.76315 -13.61002 -13.53081 -13.32996 -13.17496 -13.02366 -12.85764 -12.71285 -12.58596 -12.23275 -12.17684 -12.13043 -11.86556 -11.48827 -11.21967 -11.12895 -11.09195 -10.59632 -10.21913 -9.89352 -8.69549 -8.52713 -6.18672 -0.28264 0.58595 0.81486 1.10347 1.35755 1.45387 1.52472 1.96613 2.14988 2.22164 2.27126 2.82851 2.89676 3.13298 3.17500 3.42233 3.54913 3.75307 3.93782 3.94463 4.08260 4.19390 4.26060 4.32014 4.36243 4.47902 4.64967 4.67454 4.81174 4.88528 4.94178 5.01378 5.02164 5.17669 5.20515 5.25689 5.31566 5.33432 5.57149 5.63680 5.77396 5.79780 5.97030 6.10094 6.30504 6.44674 6.91808 7.15866 7.68577 8.69258 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.033648 B = 0.001741 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.936370 B =16081.312521 C =16560.968282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.067 3.933 3 H 0.125 0.875 4 C -0.140 4.140 5 C 0.089 3.911 6 H 0.117 0.883 7 N -0.698 5.698 8 C 0.549 3.451 9 O -0.580 6.580 10 C -0.245 4.245 11 C 0.018 3.982 12 C -0.172 4.172 13 C -0.041 4.041 14 C -0.250 4.250 15 C 0.130 3.870 16 O -0.219 6.219 17 C -0.417 4.417 18 H 0.105 0.895 19 C -0.017 4.017 20 N -0.912 5.912 21 Si 1.018 2.982 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.254 1.254 25 C -0.206 4.206 26 C -0.034 4.034 27 C 0.465 3.535 28 O -0.499 6.499 29 O -0.358 6.358 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.145 0.855 34 H 0.126 0.874 35 H 0.427 0.573 36 H 0.161 0.839 37 H 0.121 0.879 38 H 0.142 0.858 39 H 0.124 0.876 40 H 0.275 0.725 41 H 0.125 0.875 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.826 -4.454 -1.056 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.013 3.987 3 H 0.143 0.857 4 C -0.177 4.177 5 C -0.019 4.019 6 H 0.135 0.865 7 N -0.355 5.355 8 C 0.341 3.659 9 O -0.461 6.461 10 C -0.265 4.265 11 C -0.002 4.002 12 C -0.173 4.173 13 C -0.059 4.059 14 C -0.269 4.269 15 C 0.078 3.922 16 O -0.124 6.124 17 C -0.493 4.493 18 H 0.122 0.878 19 C -0.216 4.216 20 N -0.549 5.549 21 Si 0.837 3.163 22 H -0.187 1.187 23 H -0.195 1.195 24 H -0.177 1.177 25 C -0.226 4.226 26 C -0.052 4.052 27 C 0.305 3.695 28 O -0.384 6.384 29 O -0.274 6.274 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.163 0.837 34 H 0.144 0.856 35 H 0.266 0.734 36 H 0.178 0.822 37 H 0.139 0.861 38 H 0.159 0.841 39 H 0.141 0.859 40 H 0.084 0.916 41 H 0.143 0.857 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -28.426 -5.134 -0.408 28.889 hybrid contribution 1.245 0.053 0.129 1.253 sum -27.181 -5.081 -0.279 27.654 Atomic orbital electron populations 1.22060 0.90481 1.03878 1.04776 1.24191 0.97396 0.96510 0.80632 0.85693 1.23526 0.93588 1.02098 0.98534 1.22255 0.88545 0.99978 0.91119 0.86493 1.45468 1.03652 1.13595 1.72747 1.18749 0.84645 0.87170 0.75372 1.90842 1.87089 1.18033 1.50169 1.22693 0.90711 1.01505 1.11610 1.22193 0.91077 0.98640 0.88276 1.18757 0.92559 0.94118 1.11843 1.21317 0.90993 0.99701 0.93913 1.21193 1.00266 0.93832 1.11641 1.20210 0.88481 0.91078 0.92429 1.83884 1.14011 1.35993 1.78466 1.21890 0.82577 0.95486 1.49355 0.87791 1.26588 1.03161 0.96618 0.95265 1.70135 1.31348 1.08924 1.44499 0.84596 0.74336 0.77795 0.79599 1.18743 1.19525 1.17730 1.20442 0.89677 1.01087 1.11354 1.21302 0.98164 0.92122 0.93623 1.24117 0.77077 0.76382 0.91972 1.90733 1.49359 1.38518 1.59757 1.86801 1.47055 1.52923 1.40619 0.91642 0.86890 0.91767 0.83729 0.85625 0.73359 0.82157 0.86116 0.84063 0.85875 0.91569 0.85691 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.27 9.53 71.98 0.69 0.42 16 2 C 0.07 0.32 4.26 31.10 0.13 0.45 16 3 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 4 C -0.14 -0.30 6.30 31.67 0.20 -0.10 16 5 C 0.09 1.26 3.24 45.01 0.15 1.40 16 6 H 0.12 2.03 7.67 -2.39 -0.02 2.01 16 7 N -0.70 -9.96 5.13 -446.79 -2.29 -12.25 16 8 C 0.55 13.09 7.73 86.33 0.67 13.75 16 9 O -0.58 -19.56 15.94 -4.43 -0.07 -19.63 16 10 C -0.24 -5.24 9.41 23.61 0.22 -5.02 16 11 C 0.02 0.48 9.45 23.82 0.23 0.70 16 12 C -0.17 -5.26 5.87 -20.12 -0.12 -5.38 16 13 C -0.04 -1.40 9.78 22.55 0.22 -1.18 16 14 C -0.25 -10.48 9.14 22.34 0.20 -10.28 16 15 C 0.13 6.14 6.66 22.72 0.15 6.29 16 16 O -0.22 -12.57 9.74 -20.32 -0.20 -12.76 16 17 C -0.42 -23.42 9.48 67.94 0.64 -22.77 16 18 H 0.10 5.35 5.18 -2.91 -0.02 5.34 16 19 C -0.02 -0.95 5.49 84.86 0.47 -0.49 16 20 N -0.91 -53.98 13.67 21.62 0.30 -53.68 16 21 Si 1.02 41.44 29.55 68.60 2.03 43.46 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 24 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 25 C -0.21 -8.00 9.97 22.34 0.22 -7.78 16 26 C -0.03 -1.03 9.40 22.55 0.21 -0.82 16 27 C 0.47 10.71 8.28 71.43 0.59 11.30 16 28 O -0.50 -17.35 18.00 21.68 0.39 -16.96 16 29 O -0.36 -6.24 10.63 -47.96 -0.51 -6.75 16 30 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.06 0.20 8.14 -2.38 -0.02 0.18 16 33 H 0.14 -0.59 8.03 -2.39 -0.02 -0.60 16 34 H 0.13 -0.10 7.91 -2.39 -0.02 -0.12 16 35 H 0.43 2.42 8.55 -92.71 -0.79 1.63 16 36 H 0.16 2.29 6.07 -2.91 -0.02 2.27 16 37 H 0.12 3.37 7.52 -2.91 -0.02 3.35 16 38 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 39 H 0.12 5.25 5.62 -2.91 -0.02 5.23 16 40 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.16 3.32 6.16 -2.92 -0.02 3.30 16 Total: -1.00 -86.10 367.65 4.80 -81.30 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.29 Total: 16.78 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 4.87 Total: -19.50 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -2.00 Total: -65.93 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -0.39 Total: -56.11 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -86.10 4.80 -81.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492927573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.916 kcal (2) G-P(sol) polarization free energy of solvation -86.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds