Wall clock time and date at job start Tue Mar 31 2020 17:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 110.18688 * 2 1 4 4 C 1.54710 * 110.34378 * 238.20129 * 2 1 3 5 5 C 1.54676 * 101.52439 * 215.71430 * 4 2 1 6 6 H 1.08998 * 110.53132 * 265.66713 * 5 4 2 7 7 N 1.46497 * 110.53459 * 143.03304 * 5 4 2 8 8 C 1.34775 * 119.99712 * 156.96439 * 7 5 4 9 9 O 1.21722 * 120.00397 * 0.02562 * 8 7 5 10 10 C 1.46256 * 119.99529 * 180.02562 * 8 7 5 11 11 C 1.35029 * 119.99623 * 173.07107 * 10 8 7 12 12 C 1.46960 * 120.00312 * 348.86587 * 11 10 8 13 13 C 1.40030 * 120.09338 * 311.82202 * 12 11 10 14 14 C 1.37603 * 119.88775 * 179.71641 * 13 12 11 15 15 C 1.39172 * 120.10417 * 0.53940 * 14 13 12 16 16 O 1.35570 * 119.89829 * 179.74035 * 15 14 13 17 17 C 1.34779 * 117.00370 * 174.37868 * 16 15 14 18 18 H 1.08001 * 119.99595 * 5.08799 * 17 16 15 19 19 C 1.38714 * 120.00349 * 185.09372 * 17 16 15 20 20 N 1.31509 * 120.00264 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00294 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47088 * 89.99629 * 21 19 17 23 23 H 1.48496 * 109.47523 * 209.99970 * 21 19 17 24 24 H 1.48498 * 109.46921 * 329.99911 * 21 19 17 25 25 C 1.39168 * 120.20314 * 359.75694 * 15 14 13 26 26 C 1.37596 * 120.10400 * 359.95902 * 25 15 14 27 27 C 1.51325 * 104.06075 * 24.35044 * 5 4 2 28 28 O 1.20830 * 124.94843 * 164.01663 * 27 5 4 29 29 O 1.33824 * 110.10264 * 344.01507 * 27 5 4 30 30 H 1.08999 * 109.46764 * 299.57981 * 1 2 3 31 31 H 1.08997 * 109.47313 * 59.58727 * 1 2 3 32 32 H 1.08998 * 109.46658 * 179.58737 * 1 2 3 33 33 H 1.09006 * 111.12039 * 97.63383 * 4 2 1 34 34 H 1.08995 * 110.96840 * 333.73612 * 4 2 1 35 35 H 0.96998 * 119.99979 * 336.97026 * 7 5 4 36 36 H 1.07997 * 120.00488 * 353.06353 * 10 8 7 37 37 H 1.08002 * 119.99657 * 168.86374 * 11 10 8 38 38 H 1.07999 * 120.05545 * 359.97173 * 13 12 11 39 39 H 1.08010 * 119.94537 * 180.27508 * 14 13 12 40 40 H 0.96998 * 120.00376 * 179.97438 * 20 19 17 41 41 H 1.08009 * 119.95023 * 179.97438 * 25 15 14 42 42 H 1.08003 * 120.05147 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9062 1.0231 0.0000 4 6 2.0679 -0.7644 -1.2329 5 6 3.3291 -1.4435 -0.6493 6 1 4.2125 -0.8322 -0.8337 7 7 3.5033 -2.7813 -1.2206 8 6 4.7224 -3.3559 -1.2314 9 8 5.6786 -2.7636 -0.7662 10 6 4.8963 -4.6912 -1.8022 11 6 6.1352 -5.2098 -1.9412 12 6 7.3153 -4.3544 -1.7530 13 6 7.3866 -3.1073 -2.3858 14 6 8.4909 -2.3072 -2.2020 15 6 9.5409 -2.7407 -1.3978 16 8 10.6292 -1.9513 -1.2238 17 6 11.5578 -2.3747 -0.3434 18 1 11.4565 -3.3428 0.1245 19 6 12.6434 -1.5669 -0.0381 20 7 12.7669 -0.3882 -0.6080 21 14 13.9299 -2.1533 1.1828 22 1 14.9978 -2.8906 0.4607 23 1 14.5209 -0.9829 1.8797 24 1 13.2938 -3.0529 2.1784 25 6 9.4770 -3.9821 -0.7720 26 6 8.3742 -4.7864 -0.9452 27 6 3.0455 -1.5328 0.8344 28 8 3.6460 -2.2351 1.6129 29 8 2.0327 -0.7204 1.1587 30 1 -0.3633 0.5073 0.8937 31 1 -0.3634 0.5202 -0.8862 32 1 -0.3632 -1.0276 -0.0074 33 1 2.3311 -0.0771 -2.0370 34 1 1.3477 -1.5071 -1.5761 35 1 2.7412 -3.2534 -1.5911 36 1 4.0338 -5.2624 -2.1125 37 1 6.2589 -6.2533 -2.1906 38 1 6.5743 -2.7721 -3.0136 39 1 8.5449 -1.3432 -2.6860 40 1 13.5258 0.1768 -0.3942 41 1 10.2944 -4.3146 -0.1491 42 1 8.3258 -5.7498 -0.4595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492927575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:40 Heat of formation + Delta-G solvation = -86.752591 kcal Electronic energy + Delta-G solvation = -27512.495085 eV Core-core repulsion = 23424.609682 eV Total energy + Delta-G solvation = -4087.885403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.43862 -39.56965 -38.66161 -37.70383 -36.55334 -35.02714 -33.07967 -32.84325 -32.10571 -30.20463 -30.10738 -27.93488 -25.52670 -25.14717 -23.40686 -22.55543 -21.81490 -21.34560 -20.51346 -19.47265 -17.99671 -17.82867 -17.21767 -17.01058 -16.71293 -16.45008 -15.20111 -14.83671 -14.73097 -14.52349 -14.36858 -14.11622 -13.98676 -13.74771 -13.48423 -13.42229 -13.26776 -13.01862 -12.87937 -12.58836 -12.50493 -12.21200 -12.18079 -11.67305 -11.55091 -11.33007 -10.98525 -10.86455 -10.76207 -10.67661 -10.61069 -10.39363 -9.55331 -9.43309 -9.15729 -9.05221 -8.68828 -7.96213 -6.87248 -6.43131 -3.98888 1.25864 1.97276 2.43084 2.64997 2.70764 3.15668 3.16049 3.17472 3.22074 3.43323 3.75475 3.85670 4.00003 4.11629 4.30554 4.60758 4.69495 4.78493 5.02312 5.04092 5.12489 5.20035 5.20579 5.26743 5.36911 5.39600 5.56686 5.58878 5.75683 5.84557 6.18548 6.25404 6.31629 6.42777 6.57328 6.58856 6.79062 7.04339 7.14215 7.34924 7.38293 7.44660 7.50792 7.52108 7.93382 8.03594 8.44625 9.02809 9.74388 10.74854 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.002732 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.014951 B =10246.693124 C =11208.683770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.079 3.921 3 H 0.104 0.896 4 C -0.157 4.157 5 C 0.090 3.910 6 H 0.135 0.865 7 N -0.721 5.721 8 C 0.542 3.458 9 O -0.494 6.494 10 C -0.261 4.261 11 C 0.030 3.970 12 C -0.183 4.183 13 C -0.002 4.002 14 C -0.198 4.198 15 C 0.169 3.831 16 O -0.174 6.174 17 C -0.389 4.389 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.245 4.245 26 C -0.042 4.042 27 C 0.465 3.535 28 O -0.431 6.431 29 O -0.344 6.344 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.400 0.600 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.270 0.730 41 H 0.126 0.874 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.014 -2.806 -5.007 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.122 0.878 4 C -0.195 4.195 5 C -0.018 4.018 6 H 0.152 0.848 7 N -0.377 5.377 8 C 0.332 3.668 9 O -0.368 6.368 10 C -0.282 4.282 11 C 0.010 3.990 12 C -0.184 4.184 13 C -0.021 4.021 14 C -0.217 4.217 15 C 0.114 3.886 16 O -0.076 6.076 17 C -0.465 4.465 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.265 4.265 26 C -0.061 4.061 27 C 0.301 3.699 28 O -0.312 6.312 29 O -0.261 6.261 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.235 0.765 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -23.833 -2.248 -4.153 24.296 hybrid contribution 0.125 -0.500 0.441 0.679 sum -23.708 -2.748 -3.712 24.153 Atomic orbital electron populations 1.21997 0.91998 1.03616 1.03620 1.23627 0.96109 0.96077 0.81828 0.87827 1.23402 0.96307 1.01176 0.98584 1.22133 1.01210 0.87668 0.90796 0.84790 1.45718 1.11556 1.16679 1.63784 1.18564 0.82043 0.86703 0.79462 1.91033 1.38205 1.63392 1.44163 1.22536 0.98059 0.96705 1.10921 1.22364 0.91747 0.97581 0.87261 1.18285 0.95539 0.96988 1.07610 1.20416 0.94623 0.91320 0.95742 1.19992 0.94359 1.01227 1.06149 1.19510 0.87161 0.89734 0.92186 1.83901 1.25278 1.43839 1.54578 1.21391 1.01103 1.03547 1.20498 0.88907 1.25315 0.98005 0.95102 0.98123 1.70020 1.29781 1.08926 1.40846 0.85702 0.79779 0.78382 0.79543 1.19845 1.20229 1.19111 1.20969 1.00813 0.96418 1.08255 1.20722 0.91933 0.97731 0.95679 1.23570 0.77554 0.77519 0.91224 1.90784 1.46856 1.35791 1.57756 1.86815 1.47850 1.53816 1.37571 0.90940 0.89897 0.91451 0.87229 0.88572 0.76457 0.85991 0.85861 0.88121 0.86835 0.91989 0.85618 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.60 9.54 37.16 0.35 -0.25 16 2 C 0.08 0.48 4.25 -25.83 -0.11 0.37 16 3 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 4 C -0.16 -0.79 6.41 -24.95 -0.16 -0.95 16 5 C 0.09 0.93 3.26 -67.90 -0.22 0.71 16 6 H 0.13 1.61 7.61 -51.93 -0.40 1.21 16 7 N -0.72 -7.63 5.14 -55.21 -0.28 -7.91 16 8 C 0.54 8.07 6.94 -13.04 -0.09 7.98 16 9 O -0.49 -9.89 12.17 5.17 0.06 -9.83 16 10 C -0.26 -3.27 9.92 -37.50 -0.37 -3.64 16 11 C 0.03 0.42 9.77 -37.19 -0.36 0.06 16 12 C -0.18 -3.42 4.34 -105.03 -0.46 -3.88 16 13 C 0.00 -0.05 6.77 -39.14 -0.27 -0.31 16 14 C -0.20 -4.54 9.97 -39.47 -0.39 -4.94 16 15 C 0.17 4.35 6.66 -38.89 -0.26 4.10 16 16 O -0.17 -5.16 9.74 0.75 0.01 -5.16 16 17 C -0.39 -11.28 9.48 30.91 0.29 -10.99 16 18 H 0.09 2.50 5.18 -52.49 -0.27 2.23 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 20 N -0.86 -25.84 13.67 55.48 0.76 -25.08 16 21 Si 0.94 21.16 29.55 -169.99 -5.02 16.13 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 C -0.25 -5.74 9.14 -39.47 -0.36 -6.10 16 26 C -0.04 -0.85 9.78 -39.15 -0.38 -1.23 16 27 C 0.46 6.46 8.29 36.31 0.30 6.76 16 28 O -0.43 -8.23 17.99 -18.44 -0.33 -8.56 16 29 O -0.34 -3.88 10.63 -37.87 -0.40 -4.28 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.31 7.58 -51.93 -0.39 -0.08 16 35 H 0.40 2.71 8.38 -40.82 -0.34 2.37 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.10 1.75 7.46 -52.49 -0.39 1.36 16 39 H 0.11 2.51 8.06 -52.48 -0.42 2.09 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.13 2.92 5.62 -52.48 -0.29 2.62 16 42 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -38.59 363.35 -7.35 -45.94 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.03 Total: 4.59 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.58 Total: -11.32 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.47 Total: -33.00 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.66 Total: -27.83 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.59 -7.35 -45.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492927575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.813 kcal (2) G-P(sol) polarization free energy of solvation -38.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds