Wall clock time and date at job start Tue Mar 31 2020 17:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 110.18688 * 2 1 4 4 C 1.54710 * 110.34378 * 238.20129 * 2 1 3 5 5 C 1.54676 * 101.52439 * 215.71430 * 4 2 1 6 6 H 1.08998 * 110.53132 * 265.66713 * 5 4 2 7 7 N 1.46497 * 110.53459 * 143.03304 * 5 4 2 8 8 C 1.34775 * 119.99712 * 156.96439 * 7 5 4 9 9 O 1.21722 * 120.00397 * 0.02562 * 8 7 5 10 10 C 1.46256 * 119.99529 * 180.02562 * 8 7 5 11 11 C 1.35029 * 119.99623 * 173.07107 * 10 8 7 12 12 C 1.46960 * 120.00312 * 348.86587 * 11 10 8 13 13 C 1.40030 * 120.09338 * 311.82202 * 12 11 10 14 14 C 1.37603 * 119.88775 * 179.71641 * 13 12 11 15 15 C 1.39172 * 120.10417 * 0.53940 * 14 13 12 16 16 O 1.35570 * 119.89829 * 179.74035 * 15 14 13 17 17 C 1.34779 * 117.00370 * 174.37868 * 16 15 14 18 18 H 1.08001 * 119.99595 * 5.08799 * 17 16 15 19 19 C 1.38714 * 120.00349 * 185.09372 * 17 16 15 20 20 N 1.31509 * 120.00264 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00294 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47088 * 89.99629 * 21 19 17 23 23 H 1.48496 * 109.47523 * 209.99970 * 21 19 17 24 24 H 1.48498 * 109.46921 * 329.99911 * 21 19 17 25 25 C 1.39168 * 120.20314 * 359.75694 * 15 14 13 26 26 C 1.37596 * 120.10400 * 359.95902 * 25 15 14 27 27 C 1.51325 * 104.06075 * 24.35044 * 5 4 2 28 28 O 1.20830 * 124.94843 * 164.01663 * 27 5 4 29 29 O 1.33824 * 110.10264 * 344.01507 * 27 5 4 30 30 H 1.08999 * 109.46764 * 299.57981 * 1 2 3 31 31 H 1.08997 * 109.47313 * 59.58727 * 1 2 3 32 32 H 1.08998 * 109.46658 * 179.58737 * 1 2 3 33 33 H 1.09006 * 111.12039 * 97.63383 * 4 2 1 34 34 H 1.08995 * 110.96840 * 333.73612 * 4 2 1 35 35 H 0.96998 * 119.99979 * 336.97026 * 7 5 4 36 36 H 1.07997 * 120.00488 * 353.06353 * 10 8 7 37 37 H 1.08002 * 119.99657 * 168.86374 * 11 10 8 38 38 H 1.07999 * 120.05545 * 359.97173 * 13 12 11 39 39 H 1.08010 * 119.94537 * 180.27508 * 14 13 12 40 40 H 0.96998 * 120.00376 * 179.97438 * 20 19 17 41 41 H 1.08009 * 119.95023 * 179.97438 * 25 15 14 42 42 H 1.08003 * 120.05147 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9062 1.0231 0.0000 4 6 2.0679 -0.7644 -1.2329 5 6 3.3291 -1.4435 -0.6493 6 1 4.2125 -0.8322 -0.8337 7 7 3.5033 -2.7813 -1.2206 8 6 4.7224 -3.3559 -1.2314 9 8 5.6786 -2.7636 -0.7662 10 6 4.8963 -4.6912 -1.8022 11 6 6.1352 -5.2098 -1.9412 12 6 7.3153 -4.3544 -1.7530 13 6 7.3866 -3.1073 -2.3858 14 6 8.4909 -2.3072 -2.2020 15 6 9.5409 -2.7407 -1.3978 16 8 10.6292 -1.9513 -1.2238 17 6 11.5578 -2.3747 -0.3434 18 1 11.4565 -3.3428 0.1245 19 6 12.6434 -1.5669 -0.0381 20 7 12.7669 -0.3882 -0.6080 21 14 13.9299 -2.1533 1.1828 22 1 14.9978 -2.8906 0.4607 23 1 14.5209 -0.9829 1.8797 24 1 13.2938 -3.0529 2.1784 25 6 9.4770 -3.9821 -0.7720 26 6 8.3742 -4.7864 -0.9452 27 6 3.0455 -1.5328 0.8344 28 8 3.6460 -2.2351 1.6129 29 8 2.0327 -0.7204 1.1587 30 1 -0.3633 0.5073 0.8937 31 1 -0.3634 0.5202 -0.8862 32 1 -0.3632 -1.0276 -0.0074 33 1 2.3311 -0.0771 -2.0370 34 1 1.3477 -1.5071 -1.5761 35 1 2.7412 -3.2534 -1.5911 36 1 4.0338 -5.2624 -2.1125 37 1 6.2589 -6.2533 -2.1906 38 1 6.5743 -2.7721 -3.0136 39 1 8.5449 -1.3432 -2.6860 40 1 13.5258 0.1768 -0.3942 41 1 10.2944 -4.3146 -0.1491 42 1 8.3258 -5.7498 -0.4595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492927575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:39 Heat of formation + Delta-G solvation = -115.105875 kcal Electronic energy + Delta-G solvation = -27513.724575 eV Core-core repulsion = 23424.609682 eV Total energy + Delta-G solvation = -4089.114893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.33805 -40.97477 -40.27675 -38.80587 -38.22619 -36.09177 -34.61496 -33.96766 -33.47881 -31.83301 -31.04212 -29.40833 -27.43884 -25.95099 -24.65257 -23.54343 -23.23255 -22.76089 -21.49887 -20.69195 -19.80963 -18.99286 -18.61900 -18.07099 -17.99043 -17.52445 -16.45083 -16.37557 -16.15210 -15.96666 -15.62322 -15.48456 -15.27191 -14.95078 -14.79183 -14.63597 -14.56473 -14.22957 -13.87472 -13.76895 -13.59403 -13.48940 -13.04476 -12.95226 -12.91065 -12.63880 -12.36591 -12.24777 -12.14150 -12.07560 -11.85799 -11.52334 -11.25620 -10.98281 -10.72723 -10.40109 -10.09966 -9.63676 -8.59890 -8.49959 -6.16885 0.01794 0.69871 0.91737 1.06164 1.31587 1.43040 1.50055 1.88443 2.15797 2.32128 2.37196 2.84645 2.92401 3.15735 3.18592 3.52332 3.62453 3.84030 3.95957 4.04025 4.11889 4.16065 4.22455 4.26338 4.53729 4.59202 4.72911 4.75830 4.76336 4.86731 5.00108 5.04654 5.08234 5.23396 5.24426 5.28590 5.31720 5.44226 5.66070 5.71713 5.76601 5.80829 6.01300 6.24177 6.34333 6.58677 6.94279 7.37016 7.76273 8.73413 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.002732 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.014951 B =10246.693124 C =11208.683770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.067 3.933 3 H 0.118 0.882 4 C -0.135 4.135 5 C 0.088 3.912 6 H 0.114 0.886 7 N -0.699 5.699 8 C 0.527 3.473 9 O -0.556 6.556 10 C -0.225 4.225 11 C 0.005 3.995 12 C -0.153 4.153 13 C 0.001 3.999 14 C -0.214 4.214 15 C 0.122 3.878 16 O -0.231 6.231 17 C -0.416 4.416 18 H 0.100 0.900 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.020 2.980 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.257 1.257 25 C -0.256 4.256 26 C -0.055 4.055 27 C 0.462 3.538 28 O -0.500 6.500 29 O -0.360 6.360 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.068 0.932 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.424 0.576 36 H 0.180 0.820 37 H 0.171 0.829 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.274 0.726 41 H 0.117 0.883 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.474 -5.196 -6.385 30.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.013 3.987 3 H 0.136 0.864 4 C -0.172 4.172 5 C -0.020 4.020 6 H 0.132 0.868 7 N -0.356 5.356 8 C 0.318 3.682 9 O -0.435 6.435 10 C -0.245 4.245 11 C -0.014 4.014 12 C -0.154 4.154 13 C -0.017 4.017 14 C -0.233 4.233 15 C 0.072 3.928 16 O -0.137 6.137 17 C -0.492 4.492 18 H 0.117 0.883 19 C -0.221 4.221 20 N -0.558 5.558 21 Si 0.839 3.161 22 H -0.182 1.182 23 H -0.194 1.194 24 H -0.181 1.181 25 C -0.276 4.276 26 C -0.072 4.072 27 C 0.302 3.698 28 O -0.385 6.385 29 O -0.276 6.276 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.263 0.737 36 H 0.197 0.803 37 H 0.188 0.812 38 H 0.146 0.854 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.135 0.865 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -28.441 -4.659 -5.590 29.357 hybrid contribution 0.879 0.175 0.772 1.183 sum -27.562 -4.483 -4.818 28.337 Atomic orbital electron populations 1.22041 0.89887 1.04099 1.04775 1.24155 0.97679 0.96323 0.80539 0.86431 1.23502 0.93675 1.01670 0.98377 1.22219 1.03117 0.87700 0.88979 0.86799 1.45521 1.11223 1.16724 1.62113 1.19252 0.82452 0.87595 0.78889 1.91041 1.40484 1.65115 1.46838 1.23050 0.99511 0.94969 1.06997 1.22611 0.89982 0.99111 0.89725 1.18902 0.96406 0.96377 1.03680 1.20723 0.93746 0.91480 0.95726 1.20222 0.95040 1.01845 1.06190 1.20029 0.87575 0.90897 0.94344 1.83866 1.27123 1.45919 1.56784 1.21854 1.01838 1.04257 1.21230 0.88310 1.26641 1.00175 0.95096 1.00151 1.70165 1.31278 1.10798 1.43605 0.84575 0.76544 0.78204 0.76776 1.18230 1.19355 1.18057 1.21094 1.02087 0.96233 1.08150 1.21154 0.91245 0.98814 0.96035 1.24176 0.76983 0.76452 0.92222 1.90734 1.49272 1.38864 1.59672 1.86790 1.46838 1.53312 1.40639 0.91647 0.86849 0.91323 0.84370 0.85575 0.73689 0.80294 0.81162 0.85360 0.87597 0.91728 0.86530 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.54 71.98 0.69 0.08 16 2 C 0.07 0.61 4.25 31.18 0.13 0.74 16 3 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 4 C -0.13 -0.77 6.41 31.75 0.20 -0.57 16 5 C 0.09 1.65 3.26 45.02 0.15 1.80 16 6 H 0.11 2.69 7.61 -2.39 -0.02 2.68 16 7 N -0.70 -12.25 5.14 -446.81 -2.30 -14.54 16 8 C 0.53 14.05 6.94 86.33 0.60 14.64 16 9 O -0.56 -21.95 12.17 -4.42 -0.05 -22.00 16 10 C -0.22 -4.32 9.92 23.62 0.23 -4.09 16 11 C 0.00 0.11 9.77 23.82 0.23 0.34 16 12 C -0.15 -5.39 4.34 -20.13 -0.09 -5.48 16 13 C 0.00 0.05 6.77 22.55 0.15 0.21 16 14 C -0.21 -10.39 9.97 22.34 0.22 -10.17 16 15 C 0.12 6.79 6.66 22.72 0.15 6.94 16 16 O -0.23 -15.02 9.74 -20.25 -0.20 -15.21 16 17 C -0.42 -25.99 9.48 67.93 0.64 -25.35 16 18 H 0.10 5.74 5.18 -2.91 -0.02 5.72 16 19 C -0.02 -1.40 5.49 84.85 0.47 -0.93 16 20 N -0.92 -59.15 13.67 21.62 0.30 -58.86 16 21 Si 1.02 45.44 29.55 68.60 2.03 47.46 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 25 C -0.26 -12.59 9.14 22.34 0.20 -12.38 16 26 C -0.05 -2.14 9.78 22.55 0.22 -1.92 16 27 C 0.46 12.75 8.29 71.43 0.59 13.34 16 28 O -0.50 -19.75 17.99 21.65 0.39 -19.36 16 29 O -0.36 -7.81 10.63 -47.89 -0.51 -8.32 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.14 0.14 8.14 -2.38 -0.02 0.12 16 34 H 0.13 0.03 7.58 -2.39 -0.02 0.01 16 35 H 0.42 3.37 8.38 -92.71 -0.78 2.60 16 36 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 38 H 0.13 4.21 7.46 -2.91 -0.02 4.19 16 39 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 40 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 41 H 0.12 5.77 5.62 -2.91 -0.02 5.76 16 42 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -98.28 363.35 4.75 -93.53 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.29 Total: 20.10 kcal Atomic # 6 Polarization: -27.60 SS G_CDS: 4.80 Total: -22.79 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -2.00 Total: -73.40 kcal Atomic # 8 Polarization: -64.52 SS G_CDS: -0.37 Total: -64.89 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -98.28 4.75 -93.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492927575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.577 kcal (2) G-P(sol) polarization free energy of solvation -98.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds