Wall clock time and date at job start Tue Mar 31 2020 16:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 C 1.52995 * 109.47325 * 239.99425 * 2 1 3 5 5 O 1.45205 * 109.47035 * 119.99418 * 2 1 3 6 6 C 1.34644 * 116.99762 * 60.00452 * 5 2 1 7 7 O 1.21506 * 119.99614 * 359.97438 * 6 5 2 8 8 N 1.34779 * 119.99858 * 179.72351 * 6 5 2 9 9 C 1.46379 * 119.64700 * 354.07928 * 8 6 5 10 10 C 1.53241 * 109.48719 * 245.09037 * 9 8 6 11 11 S 1.81740 * 108.79790 * 302.34302 * 10 9 8 12 12 C 1.81742 * 102.30579 * 54.54102 * 11 10 9 13 13 C 1.46369 * 119.64395 * 173.81119 * 8 6 5 14 14 H 1.09002 * 109.46963 * 234.91582 * 13 8 6 15 15 C 1.53005 * 109.47393 * 354.90245 * 13 8 6 16 16 C 1.50696 * 109.46862 * 295.40540 * 15 13 8 17 17 O 1.21212 * 120.00590 * 359.97438 * 16 15 13 18 18 O 1.34318 * 119.99508 * 179.97438 * 16 15 13 19 19 C 1.34922 * 116.99709 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00108 * 0.02562 * 19 18 16 21 21 C 1.38749 * 120.00264 * 180.02562 * 19 18 16 22 22 N 1.31450 * 119.99512 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00495 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47083 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47678 * 119.99832 * 23 21 19 26 26 H 1.48511 * 109.46872 * 239.99894 * 23 21 19 27 27 H 1.09004 * 109.46795 * 299.99921 * 1 2 3 28 28 H 1.08995 * 109.46952 * 60.00103 * 1 2 3 29 29 H 1.09001 * 109.46753 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47396 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46667 * 299.99811 * 3 2 1 32 32 H 1.08999 * 109.47418 * 59.99633 * 3 2 1 33 33 H 1.08999 * 109.47334 * 300.00292 * 4 2 1 34 34 H 1.09009 * 109.46756 * 60.00185 * 4 2 1 35 35 H 1.08997 * 109.47405 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.46668 * 5.09184 * 9 8 6 37 37 H 1.08998 * 109.46634 * 125.08126 * 9 8 6 38 38 H 1.09003 * 109.58256 * 62.13737 * 10 9 8 39 39 H 1.08996 * 109.58288 * 182.54915 * 10 9 8 40 40 H 1.09000 * 109.58545 * 65.25414 * 12 11 10 41 41 H 1.09001 * 109.58296 * 185.53053 * 12 11 10 42 42 H 1.09007 * 109.46502 * 55.39768 * 15 13 8 43 43 H 1.08992 * 109.47573 * 175.39867 * 15 13 8 44 44 H 0.97007 * 119.99687 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6523 -1.9723 1.3385 7 8 0.9510 -2.5094 0.5042 8 7 2.0722 -2.6671 2.4143 9 6 3.0249 -2.0572 3.3434 10 6 4.3450 -2.8344 3.3054 11 16 4.0143 -4.5714 3.7254 12 6 2.7273 -5.0222 2.5240 13 6 1.5663 -4.0212 2.6442 14 1 1.1325 -4.0824 3.6424 15 6 0.4953 -4.3494 1.6020 16 6 -0.6874 -3.4350 1.7921 17 8 -0.6752 -2.6036 2.6740 18 8 -1.7551 -3.5414 0.9841 19 6 -2.7799 -2.6931 1.2086 20 1 -2.7175 -1.9705 2.0088 21 6 -3.9141 -2.7490 0.4113 22 7 -3.9899 -3.6281 -0.5630 23 14 -5.3328 -1.5740 0.7215 24 1 -5.0014 -0.6894 1.8674 25 1 -5.5659 -0.7483 -0.4904 26 1 -6.5592 -2.3507 1.0348 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7210 -1.2494 36 1 3.2042 -1.0222 3.0525 37 1 2.6158 -2.0850 4.3533 38 1 4.7748 -2.7758 2.3054 39 1 5.0401 -2.4095 4.0295 40 1 3.1400 -4.9866 1.5158 41 1 2.3662 -6.0286 2.7357 42 1 0.9063 -4.2088 0.6022 43 1 0.1770 -5.3849 1.7217 44 1 -4.7827 -3.6669 -1.1207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493968000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:06 Heat of formation + Delta-G solvation = -148.238144 kcal Electronic energy + Delta-G solvation = -29231.641511 eV Core-core repulsion = 25276.533845 eV Total energy + Delta-G solvation = -3955.107665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.42647 -40.72054 -39.35825 -37.23661 -36.96662 -35.26090 -34.21347 -33.87866 -31.15362 -29.63588 -28.37785 -28.28814 -27.17693 -24.83684 -24.47984 -22.65286 -21.62105 -20.48268 -19.75550 -18.82755 -18.63810 -17.64975 -17.48516 -17.12895 -16.96281 -16.37286 -16.21154 -16.14951 -15.73499 -15.41446 -15.05153 -14.89309 -14.64184 -14.54858 -14.06237 -13.98391 -13.80268 -13.51388 -13.38463 -13.24451 -13.14124 -12.99677 -12.84679 -12.82025 -12.57973 -12.50387 -12.23533 -12.20183 -12.10866 -11.97438 -11.86223 -11.36994 -10.97392 -10.87074 -10.63479 -10.25894 -9.97825 -8.70963 -8.46810 -6.23435 0.65176 1.07588 1.28997 1.29963 1.41092 1.47814 1.57276 2.13627 2.15838 2.68643 2.90330 3.06406 3.58303 3.65448 3.76305 3.78947 3.86350 3.94053 3.99995 4.03737 4.23057 4.37189 4.48596 4.55029 4.57976 4.60461 4.66229 4.73405 4.74221 4.80758 4.81531 4.89031 4.94627 4.96627 5.12769 5.24076 5.29977 5.37177 5.47192 5.49308 5.92458 6.28182 6.84938 6.99488 7.29126 7.96302 8.75243 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.005101 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.418314 B = 5487.473486 C = 6961.161733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.132 3.868 3 C -0.129 4.129 4 C -0.173 4.173 5 O -0.366 6.366 6 C 0.655 3.345 7 O -0.575 6.575 8 N -0.588 5.588 9 C 0.110 3.890 10 C -0.088 4.088 11 S -0.260 6.260 12 C -0.085 4.085 13 C 0.185 3.815 14 H 0.087 0.913 15 C -0.108 4.108 16 C 0.436 3.564 17 O -0.594 6.594 18 O -0.250 6.250 19 C -0.398 4.398 20 H 0.069 0.931 21 C -0.008 4.008 22 N -0.908 5.908 23 Si 1.007 2.993 24 H -0.268 1.268 25 H -0.261 1.261 26 H -0.260 1.260 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.146 0.854 40 H 0.096 0.904 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.104 0.896 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.797 4.745 3.296 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.096 3.904 3 C -0.186 4.186 4 C -0.230 4.230 5 O -0.280 6.280 6 C 0.412 3.588 7 O -0.467 6.467 8 N -0.328 5.328 9 C -0.014 4.014 10 C -0.236 4.236 11 S -0.032 6.032 12 C -0.235 4.235 13 C 0.081 3.919 14 H 0.105 0.895 15 C -0.147 4.147 16 C 0.286 3.714 17 O -0.493 6.493 18 O -0.158 6.158 19 C -0.474 4.474 20 H 0.087 0.913 21 C -0.206 4.206 22 N -0.547 5.547 23 Si 0.827 3.173 24 H -0.193 1.193 25 H -0.186 1.186 26 H -0.184 1.184 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.164 0.836 40 H 0.115 0.885 41 H 0.157 0.843 42 H 0.154 0.846 43 H 0.122 0.878 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.963 4.148 3.876 19.795 hybrid contribution -1.766 1.031 -0.835 2.209 sum 17.197 5.179 3.041 18.216 Atomic orbital electron populations 1.22395 0.95909 1.03120 1.01864 1.22313 0.92773 0.93360 0.81979 1.21841 1.02854 0.89940 1.03965 1.22406 1.01883 1.01964 0.96745 1.86217 1.71342 1.23177 1.47290 1.18335 0.77569 0.80868 0.82077 1.90930 1.41462 1.69070 1.45201 1.46700 1.46485 1.15324 1.24242 1.21912 0.87295 0.98130 0.94021 1.23901 0.99727 0.92948 1.07065 1.86870 1.50796 1.15782 1.49703 1.23939 0.95264 1.02495 1.01753 1.21116 0.92177 0.79474 0.99129 0.89512 1.21907 0.90620 0.97950 1.04211 1.23718 0.84260 0.84497 0.78972 1.90491 1.82530 1.39758 1.36562 1.83891 1.24725 1.54449 1.52765 1.21161 0.93994 1.14758 1.17503 0.91297 1.26368 1.00325 0.99351 0.94591 1.70110 1.30092 1.35637 1.18874 0.84715 0.76474 0.77298 0.78795 1.19253 1.18578 1.18404 0.94024 0.90059 0.93236 0.89732 0.88305 0.91814 0.92510 0.89739 0.90516 0.87325 0.89721 0.88978 0.83650 0.88525 0.84262 0.84642 0.87775 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.80 8.37 71.98 0.60 -6.19 16 2 C 0.13 3.99 1.13 -10.79 -0.01 3.98 16 3 C -0.13 -2.66 8.85 71.98 0.64 -2.02 16 4 C -0.17 -4.80 8.37 71.98 0.60 -4.20 16 5 O -0.37 -12.08 8.42 -55.54 -0.47 -12.55 16 6 C 0.65 24.25 6.23 129.79 0.81 25.06 16 7 O -0.57 -24.99 5.82 26.06 0.15 -24.83 16 8 N -0.59 -18.23 2.42 -926.76 -2.25 -20.48 16 9 C 0.11 2.47 6.24 86.48 0.54 3.01 16 10 C -0.09 -1.45 6.67 72.06 0.48 -0.97 16 11 S -0.26 -5.24 22.29 -56.49 -1.26 -6.50 16 12 C -0.09 -1.87 5.98 72.24 0.43 -1.44 16 13 C 0.19 5.66 2.30 45.27 0.10 5.77 16 14 H 0.09 2.85 7.97 -2.39 -0.02 2.83 16 15 C -0.11 -4.16 4.79 29.85 0.14 -4.01 16 16 C 0.44 22.96 5.28 71.23 0.38 23.33 16 17 O -0.59 -33.12 13.78 26.34 0.36 -32.75 16 18 O -0.25 -15.61 9.75 16.09 0.16 -15.46 16 19 C -0.40 -25.34 9.64 67.94 0.66 -24.69 16 20 H 0.07 4.53 6.86 -2.91 -0.02 4.51 16 21 C -0.01 -0.46 5.49 84.87 0.47 0.01 16 22 N -0.91 -56.46 13.67 21.62 0.30 -56.17 16 23 Si 1.01 45.99 29.55 68.60 2.03 48.02 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 27 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.05 2.48 5.88 -2.39 -0.01 2.46 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.99 5.88 -2.39 -0.01 1.98 16 34 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.11 2.31 6.79 -2.39 -0.02 2.29 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.15 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.14 5.42 5.69 -34.12 -0.19 5.22 16 43 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 44 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -81.56 359.59 5.68 -75.88 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.82 Total: 27.21 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 5.84 Total: 17.63 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -1.95 Total: -76.64 kcal Atomic # 8 Polarization: -85.80 SS G_CDS: 0.20 Total: -85.60 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -1.26 Total: -6.50 kcal Total: -81.56 5.68 -75.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493968000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.359 kcal (2) G-P(sol) polarization free energy of solvation -81.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds