Wall clock time and date at job start Tue Mar 31 2020 17:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47804 * 2 1 4 4 C 1.50705 * 109.47195 * 240.00357 * 2 1 3 5 5 H 1.08009 * 119.99989 * 245.37863 * 4 2 1 6 6 C 1.37875 * 119.99990 * 65.37237 * 4 2 1 7 7 N 1.31513 * 119.99848 * 185.17120 * 6 4 2 8 8 Si 1.86798 * 120.00002 * 5.16901 * 6 4 2 9 9 H 1.48501 * 109.46960 * 270.00021 * 8 6 4 10 10 H 1.48504 * 109.46972 * 30.00005 * 8 6 4 11 11 H 1.48497 * 109.46828 * 150.00067 * 8 6 4 12 12 O 1.45199 * 109.47434 * 120.00521 * 2 1 3 13 13 C 1.34228 * 116.99833 * 270.00055 * 12 2 1 14 14 O 1.20826 * 119.99942 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00103 * 179.97438 * 13 12 2 16 16 H 1.09004 * 108.70435 * 61.74097 * 15 13 12 17 17 C 1.54566 * 108.75380 * 303.63758 * 15 13 12 18 18 S 1.84212 * 101.32748 * 215.93337 * 17 15 13 19 19 C 1.84080 * 93.90874 * 32.25809 * 18 17 15 20 20 N 1.45502 * 108.75567 * 179.97438 * 15 13 12 21 21 C 1.34768 * 122.43024 * 299.91101 * 20 15 13 22 22 O 1.21514 * 120.00104 * 0.02562 * 21 20 15 23 23 O 1.34641 * 120.00115 * 179.97438 * 21 20 15 24 24 C 1.45204 * 117.00023 * 179.97438 * 23 21 20 25 25 C 1.53004 * 109.46813 * 60.00974 * 24 23 21 26 26 C 1.53004 * 109.46918 * 180.02562 * 24 23 21 27 27 C 1.52999 * 109.47491 * 300.00611 * 24 23 21 28 28 H 1.08999 * 109.46930 * 294.96900 * 1 2 3 29 29 H 1.08995 * 109.46839 * 54.97321 * 1 2 3 30 30 H 1.09001 * 109.47403 * 174.97558 * 1 2 3 31 31 H 0.97002 * 120.00073 * 354.99391 * 7 6 4 32 32 H 1.08999 * 111.04860 * 333.94842 * 17 15 13 33 33 H 1.08997 * 111.04914 * 97.92501 * 17 15 13 34 34 H 1.09003 * 110.77203 * 208.27517 * 19 18 17 35 35 H 1.09005 * 110.77515 * 84.85240 * 19 18 17 36 36 H 1.08996 * 109.47527 * 59.99512 * 25 24 23 37 37 H 1.08996 * 109.46662 * 179.97438 * 25 24 23 38 38 H 1.09006 * 109.46619 * 299.99774 * 25 24 23 39 39 H 1.08996 * 109.47112 * 60.00110 * 26 24 23 40 40 H 1.09000 * 109.46968 * 180.02562 * 26 24 23 41 41 H 1.08996 * 109.47096 * 300.00289 * 26 24 23 42 42 H 1.08997 * 109.46959 * 59.99457 * 27 24 23 43 43 H 1.09000 * 109.47129 * 179.97438 * 27 24 23 44 44 H 1.08996 * 109.46857 * 300.00084 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5797 -1.6364 -1.1339 6 6 1.7930 -0.1782 -2.4797 7 7 2.1412 -0.8471 -3.5572 8 14 0.9742 1.4929 -2.6418 9 1 -0.4990 1.3180 -2.7072 10 1 1.3215 2.3305 -1.4657 11 1 1.4492 2.1587 -3.8813 12 8 2.0140 -0.6846 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9982 1.2517 2.2504 15 6 2.7183 -0.5774 3.5494 16 1 3.7005 -1.0097 3.3581 17 6 1.7486 -1.7128 3.9490 18 16 1.7779 -1.5837 5.7863 19 6 2.0280 0.2400 5.7800 20 7 2.8507 0.4492 4.5720 21 6 3.6645 1.5135 4.4265 22 8 4.3213 1.6420 3.4123 23 8 3.7490 2.4351 5.4045 24 6 4.6460 3.5545 5.1797 25 6 4.2034 4.3199 3.9309 26 6 4.6090 4.4888 6.3908 27 6 6.0710 3.0343 4.9807 28 1 -0.3633 0.4338 0.9316 29 1 -0.3633 0.5898 -0.8415 30 1 -0.3634 -1.0237 -0.0900 31 1 2.6310 -1.6802 -3.4736 32 1 0.7476 -1.5279 3.5593 33 1 2.1229 -2.6817 3.6186 34 1 2.5649 0.5597 6.6733 35 1 1.0744 0.7608 5.6936 36 1 3.1882 4.6905 4.0726 37 1 4.8765 5.1605 3.7625 38 1 4.2300 3.6540 3.0683 39 1 4.9245 3.9434 7.2802 40 1 5.2820 5.3294 6.2218 41 1 3.5939 4.8594 6.5329 42 1 6.0976 2.3685 4.1181 43 1 6.7443 3.8747 4.8115 44 1 6.3862 2.4891 5.8703 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495967460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:10 Heat of formation + Delta-G solvation = -148.737638 kcal Electronic energy + Delta-G solvation = -28092.244824 eV Core-core repulsion = 24137.115499 eV Total energy + Delta-G solvation = -3955.129325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.13099 -39.89820 -37.94294 -36.11540 -35.72560 -34.17521 -33.31977 -31.62337 -30.33897 -27.75687 -27.51659 -27.43759 -25.09976 -24.78106 -23.04606 -21.09142 -19.98597 -19.37535 -18.33463 -17.92857 -17.51487 -17.27939 -16.42556 -16.17799 -15.70432 -15.39365 -15.08320 -14.57346 -14.46979 -14.04394 -13.90382 -13.77650 -13.52498 -12.99928 -12.90955 -12.68915 -12.62720 -12.40146 -12.35018 -12.06415 -12.04334 -11.95712 -11.77998 -11.70482 -11.50806 -11.42739 -11.03665 -10.69600 -10.46145 -10.16778 -10.13442 -9.99484 -9.83649 -9.69881 -9.11658 -8.79687 -8.60068 -8.21287 -6.63232 -4.28484 1.25522 1.59615 1.68635 2.64445 2.75749 3.21482 3.27547 3.38999 3.51063 3.60741 4.01810 4.33974 4.57232 4.61493 4.64937 4.75589 4.77090 4.94576 5.09094 5.13421 5.21467 5.29563 5.34261 5.38294 5.43135 5.53857 5.62664 5.76029 5.79168 5.86080 6.13499 6.16851 6.25212 6.27976 6.37263 6.38781 6.57346 7.01269 7.02957 7.30592 7.72808 8.17498 8.22688 8.38879 8.78526 9.40980 10.79653 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.004303 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.765900 B = 6505.278476 C = 8124.641641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.191 3.809 3 H 0.046 0.954 4 C -0.598 4.598 5 H 0.070 0.930 6 C 0.037 3.963 7 N -0.900 5.900 8 Si 1.045 2.955 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.283 1.283 12 O -0.341 6.341 13 C 0.444 3.556 14 O -0.496 6.496 15 C 0.158 3.842 16 H 0.126 0.874 17 C -0.055 4.055 18 S -0.259 6.259 19 C 0.161 3.839 20 N -0.589 5.589 21 C 0.676 3.324 22 O -0.536 6.536 23 O -0.361 6.361 24 C 0.137 3.863 25 C -0.185 4.185 26 C -0.139 4.139 27 C -0.184 4.184 28 H 0.032 0.968 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.271 0.729 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.063 5.114 22.605 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.137 3.863 3 H 0.064 0.936 4 C -0.636 4.636 5 H 0.088 0.912 6 C -0.168 4.168 7 N -0.534 5.534 8 Si 0.873 3.127 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.209 1.209 12 O -0.256 6.256 13 C 0.283 3.717 14 O -0.383 6.383 15 C 0.051 3.949 16 H 0.144 0.856 17 C -0.203 4.203 18 S -0.032 6.032 19 C -0.072 4.072 20 N -0.333 5.333 21 C 0.430 3.570 22 O -0.421 6.421 23 O -0.276 6.276 24 C 0.100 3.900 25 C -0.242 4.242 26 C -0.196 4.196 27 C -0.241 4.241 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.159 0.841 34 H 0.142 0.858 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.567 5.855 22.033 22.851 hybrid contribution 0.594 -0.166 0.127 0.630 sum 2.161 5.689 22.160 22.981 Atomic orbital electron populations 1.22465 0.98295 1.01907 0.99653 1.21106 0.90601 0.94702 0.79842 0.93646 1.21993 1.40977 1.11102 0.89551 0.91191 1.25649 0.96448 1.03500 0.91217 1.70816 1.35978 1.16810 1.29777 0.84009 0.76560 0.75631 0.76477 1.20533 1.20081 1.20870 1.86508 1.75803 1.42755 1.20509 1.23317 0.75715 0.86425 0.86251 1.90615 1.47234 1.16323 1.84162 1.20645 1.02598 0.87159 0.84477 0.85607 1.24500 1.02883 1.01031 0.91898 1.88354 1.96054 1.09062 1.09755 1.24260 0.98687 0.93636 0.90659 1.46773 1.45248 1.23357 1.17886 1.17366 0.79015 0.79089 0.81539 1.90979 1.46140 1.76074 1.28945 1.86246 1.63704 1.33586 1.44067 1.22118 0.88156 0.82920 0.96774 1.22516 1.01622 1.01224 0.98800 1.21849 1.03278 0.98156 0.96285 1.22524 0.94619 1.02987 1.03976 0.94861 0.92184 0.91983 0.91836 0.86961 0.84058 0.85850 0.88278 0.92094 0.91218 0.88920 0.91562 0.90086 0.91461 0.89306 0.91036 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.70 9.14 37.16 0.34 -3.36 16 2 C 0.19 4.84 2.14 -27.88 -0.06 4.78 16 3 H 0.05 1.24 5.66 -51.93 -0.29 0.95 16 4 C -0.60 -17.14 9.25 -34.44 -0.32 -17.46 16 5 H 0.07 2.13 8.04 -52.48 -0.42 1.71 16 6 C 0.04 1.08 5.43 -17.82 -0.10 0.99 16 7 N -0.90 -27.38 13.70 55.43 0.76 -26.62 16 8 Si 1.04 25.61 25.29 -169.99 -4.30 21.31 16 9 H -0.28 -6.35 6.81 56.52 0.38 -5.96 16 10 H -0.28 -6.58 6.36 56.52 0.36 -6.22 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 O -0.34 -7.65 9.71 -39.25 -0.38 -8.03 16 13 C 0.44 8.86 6.53 36.01 0.24 9.10 16 14 O -0.50 -11.24 13.81 -25.33 -0.35 -11.59 16 15 C 0.16 2.33 2.95 -68.80 -0.20 2.13 16 16 H 0.13 1.79 8.14 -51.93 -0.42 1.36 16 17 C -0.05 -0.62 6.92 37.98 0.26 -0.36 16 18 S -0.26 -2.72 23.43 -107.50 -2.52 -5.24 16 19 C 0.16 1.70 7.44 60.47 0.45 2.15 16 20 N -0.59 -8.33 2.77 -174.88 -0.48 -8.81 16 21 C 0.68 10.77 6.80 54.05 0.37 11.14 16 22 O -0.54 -10.19 10.55 -25.89 -0.27 -10.46 16 23 O -0.36 -4.85 9.13 -40.33 -0.37 -5.22 16 24 C 0.14 1.58 1.13 -90.62 -0.10 1.48 16 25 C -0.18 -2.39 8.37 37.16 0.31 -2.08 16 26 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 27 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.34 4.40 -51.93 -0.23 1.11 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.27 8.17 8.72 -40.82 -0.36 7.82 16 32 H 0.11 1.29 7.85 -51.93 -0.41 0.88 16 33 H 0.14 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.12 1.09 7.87 -51.93 -0.41 0.68 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.57 5.88 -51.93 -0.31 1.26 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 1.25 5.88 -51.93 -0.31 0.95 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -33.90 363.98 -7.26 -41.16 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.65 Total: 2.03 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 1.83 Total: 5.99 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.28 Total: -35.43 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.37 Total: -35.30 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -4.30 Total: 21.31 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -2.52 Total: -5.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.90 -7.26 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495967460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.583 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds