Wall clock time and date at job start Tue Mar 31 2020 17:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47804 * 2 1 4 4 C 1.50705 * 109.47195 * 240.00357 * 2 1 3 5 5 H 1.08009 * 119.99989 * 245.37863 * 4 2 1 6 6 C 1.37875 * 119.99990 * 65.37237 * 4 2 1 7 7 N 1.31513 * 119.99848 * 185.17120 * 6 4 2 8 8 Si 1.86798 * 120.00002 * 5.16901 * 6 4 2 9 9 H 1.48501 * 109.46960 * 270.00021 * 8 6 4 10 10 H 1.48504 * 109.46972 * 30.00005 * 8 6 4 11 11 H 1.48497 * 109.46828 * 150.00067 * 8 6 4 12 12 O 1.45199 * 109.47434 * 120.00521 * 2 1 3 13 13 C 1.34228 * 116.99833 * 270.00055 * 12 2 1 14 14 O 1.20826 * 119.99942 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00103 * 179.97438 * 13 12 2 16 16 H 1.09004 * 108.70435 * 61.74097 * 15 13 12 17 17 C 1.54566 * 108.75380 * 303.63758 * 15 13 12 18 18 S 1.84212 * 101.32748 * 215.93337 * 17 15 13 19 19 C 1.84080 * 93.90874 * 32.25809 * 18 17 15 20 20 N 1.45502 * 108.75567 * 179.97438 * 15 13 12 21 21 C 1.34768 * 122.43024 * 299.91101 * 20 15 13 22 22 O 1.21514 * 120.00104 * 0.02562 * 21 20 15 23 23 O 1.34641 * 120.00115 * 179.97438 * 21 20 15 24 24 C 1.45204 * 117.00023 * 179.97438 * 23 21 20 25 25 C 1.53004 * 109.46813 * 60.00974 * 24 23 21 26 26 C 1.53004 * 109.46918 * 180.02562 * 24 23 21 27 27 C 1.52999 * 109.47491 * 300.00611 * 24 23 21 28 28 H 1.08999 * 109.46930 * 294.96900 * 1 2 3 29 29 H 1.08995 * 109.46839 * 54.97321 * 1 2 3 30 30 H 1.09001 * 109.47403 * 174.97558 * 1 2 3 31 31 H 0.97002 * 120.00073 * 354.99391 * 7 6 4 32 32 H 1.08999 * 111.04860 * 333.94842 * 17 15 13 33 33 H 1.08997 * 111.04914 * 97.92501 * 17 15 13 34 34 H 1.09003 * 110.77203 * 208.27517 * 19 18 17 35 35 H 1.09005 * 110.77515 * 84.85240 * 19 18 17 36 36 H 1.08996 * 109.47527 * 59.99512 * 25 24 23 37 37 H 1.08996 * 109.46662 * 179.97438 * 25 24 23 38 38 H 1.09006 * 109.46619 * 299.99774 * 25 24 23 39 39 H 1.08996 * 109.47112 * 60.00110 * 26 24 23 40 40 H 1.09000 * 109.46968 * 180.02562 * 26 24 23 41 41 H 1.08996 * 109.47096 * 300.00289 * 26 24 23 42 42 H 1.08997 * 109.46959 * 59.99457 * 27 24 23 43 43 H 1.09000 * 109.47129 * 179.97438 * 27 24 23 44 44 H 1.08996 * 109.46857 * 300.00084 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5797 -1.6364 -1.1339 6 6 1.7930 -0.1782 -2.4797 7 7 2.1412 -0.8471 -3.5572 8 14 0.9742 1.4929 -2.6418 9 1 -0.4990 1.3180 -2.7072 10 1 1.3215 2.3305 -1.4657 11 1 1.4492 2.1587 -3.8813 12 8 2.0140 -0.6846 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9982 1.2517 2.2504 15 6 2.7183 -0.5774 3.5494 16 1 3.7005 -1.0097 3.3581 17 6 1.7486 -1.7128 3.9490 18 16 1.7779 -1.5837 5.7863 19 6 2.0280 0.2400 5.7800 20 7 2.8507 0.4492 4.5720 21 6 3.6645 1.5135 4.4265 22 8 4.3213 1.6420 3.4123 23 8 3.7490 2.4351 5.4045 24 6 4.6460 3.5545 5.1797 25 6 4.2034 4.3199 3.9309 26 6 4.6090 4.4888 6.3908 27 6 6.0710 3.0343 4.9807 28 1 -0.3633 0.4338 0.9316 29 1 -0.3633 0.5898 -0.8415 30 1 -0.3634 -1.0237 -0.0900 31 1 2.6310 -1.6802 -3.4736 32 1 0.7476 -1.5279 3.5593 33 1 2.1229 -2.6817 3.6186 34 1 2.5649 0.5597 6.6733 35 1 1.0744 0.7608 5.6936 36 1 3.1882 4.6905 4.0726 37 1 4.8765 5.1605 3.7625 38 1 4.2300 3.6540 3.0683 39 1 4.9245 3.9434 7.2802 40 1 5.2820 5.3294 6.2218 41 1 3.5939 4.8594 6.5329 42 1 6.0976 2.3685 4.1181 43 1 6.7443 3.8747 4.8115 44 1 6.3862 2.4891 5.8703 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495967460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:10 Heat of formation + Delta-G solvation = -170.322030 kcal Electronic energy + Delta-G solvation = -28093.180793 eV Core-core repulsion = 24137.115499 eV Total energy + Delta-G solvation = -3956.065294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.37129 -41.38036 -39.17776 -37.59168 -37.18465 -35.45731 -35.12695 -32.99384 -32.07579 -28.69708 -28.41481 -28.29134 -27.06914 -26.05526 -24.46081 -22.60996 -21.44539 -20.65533 -19.97991 -19.34372 -19.14325 -18.42118 -17.79802 -17.31675 -17.07386 -16.86265 -16.17554 -15.87618 -15.62766 -15.38246 -15.18003 -14.95873 -14.88652 -14.54785 -14.46168 -14.27403 -13.71925 -13.52680 -13.49340 -13.35965 -13.22434 -13.09385 -12.94307 -12.89819 -12.63009 -12.58011 -12.47016 -12.18066 -12.11399 -11.84226 -11.61006 -11.45968 -11.37673 -11.14646 -10.95488 -10.81046 -10.30474 -9.03194 -8.95154 -6.61812 0.38384 0.55031 0.71864 1.10053 1.31205 1.43207 1.47924 1.59318 1.86299 2.29540 2.54374 2.89556 2.92876 3.48280 3.69281 3.72450 3.75265 3.90363 3.95778 4.13964 4.20621 4.25724 4.29652 4.42524 4.43953 4.51808 4.57136 4.64998 4.71145 4.72747 4.79364 4.80368 4.86318 5.11461 5.21370 5.25117 5.29800 5.31183 5.37343 5.71291 5.87645 5.89474 6.32928 6.73168 7.04839 7.16618 8.47071 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.004303 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.765900 B = 6505.278476 C = 8124.641641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.192 3.808 3 H 0.023 0.977 4 C -0.607 4.607 5 H 0.036 0.964 6 C -0.005 4.005 7 N -0.925 5.925 8 Si 1.078 2.922 9 H -0.244 1.244 10 H -0.271 1.271 11 H -0.278 1.278 12 O -0.349 6.349 13 C 0.441 3.559 14 O -0.525 6.525 15 C 0.165 3.835 16 H 0.130 0.870 17 C -0.053 4.053 18 S -0.232 6.232 19 C 0.156 3.844 20 N -0.591 5.591 21 C 0.670 3.330 22 O -0.574 6.574 23 O -0.354 6.354 24 C 0.126 3.874 25 C -0.181 4.181 26 C -0.131 4.131 27 C -0.179 4.179 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.259 0.741 32 H 0.113 0.887 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.109 0.891 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 6.132 25.460 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.138 3.862 3 H 0.041 0.959 4 C -0.645 4.645 5 H 0.055 0.945 6 C -0.205 4.205 7 N -0.559 5.559 8 Si 0.900 3.100 9 H -0.168 1.168 10 H -0.197 1.197 11 H -0.204 1.204 12 O -0.264 6.264 13 C 0.281 3.719 14 O -0.414 6.414 15 C 0.058 3.942 16 H 0.148 0.852 17 C -0.202 4.202 18 S -0.005 6.005 19 C -0.076 4.076 20 N -0.334 5.334 21 C 0.425 3.575 22 O -0.463 6.463 23 O -0.269 6.269 24 C 0.090 3.910 25 C -0.238 4.238 26 C -0.187 4.187 27 C -0.237 4.237 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.180 0.820 34 H 0.163 0.837 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.559 6.842 24.943 25.871 hybrid contribution 1.016 -0.500 -0.669 1.316 sum 1.576 6.342 24.274 25.138 Atomic orbital electron populations 1.22319 0.95501 1.02714 1.00930 1.20803 0.92582 0.92890 0.79962 0.95907 1.22136 1.40607 1.10077 0.91678 0.94541 1.26962 0.96499 1.06126 0.90926 1.70917 1.37422 1.16916 1.30694 0.83603 0.77969 0.71767 0.76705 1.16806 1.19689 1.20364 1.86484 1.76280 1.42931 1.20708 1.24360 0.74575 0.86212 0.86740 1.90596 1.48476 1.17653 1.84634 1.20773 1.03341 0.87720 0.82355 0.85248 1.24535 1.02034 1.00405 0.93203 1.88326 1.95925 1.08364 1.07878 1.24529 0.98906 0.94238 0.89934 1.46916 1.45097 1.22776 1.18583 1.17655 0.78807 0.79606 0.81454 1.90973 1.47723 1.76990 1.30568 1.86270 1.64089 1.33520 1.42980 1.22498 0.87900 0.82729 0.97838 1.22466 1.02234 1.01209 0.97927 1.21868 1.04207 0.97910 0.94751 1.22472 0.94983 1.03234 1.02965 0.92646 0.91973 0.91224 0.93119 0.86828 0.81988 0.83714 0.87320 0.92403 0.88856 0.93386 0.90251 0.87866 0.91152 0.92846 0.88946 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.83 9.14 71.98 0.66 -6.17 16 2 C 0.19 9.84 2.14 29.85 0.06 9.90 16 3 H 0.02 1.28 5.66 -2.39 -0.01 1.27 16 4 C -0.61 -35.82 9.25 25.60 0.24 -35.58 16 5 H 0.04 2.33 8.04 -2.91 -0.02 2.31 16 6 C -0.01 -0.31 5.43 84.65 0.46 0.15 16 7 N -0.92 -57.57 13.70 21.45 0.29 -57.28 16 8 Si 1.08 51.27 25.29 68.60 1.73 53.00 16 9 H -0.24 -10.22 6.81 99.48 0.68 -9.54 16 10 H -0.27 -12.68 6.36 99.48 0.63 -12.05 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 O -0.35 -15.90 9.71 -51.40 -0.50 -16.40 16 13 C 0.44 17.73 6.53 71.24 0.47 18.19 16 14 O -0.52 -24.20 13.81 28.25 0.39 -23.81 16 15 C 0.17 4.78 2.95 44.97 0.13 4.91 16 16 H 0.13 3.67 8.14 -2.39 -0.02 3.65 16 17 C -0.05 -1.11 6.92 72.51 0.50 -0.61 16 18 S -0.23 -4.24 23.43 -56.49 -1.32 -5.56 16 19 C 0.16 2.93 7.44 127.55 0.95 3.88 16 20 N -0.59 -16.15 2.77 -937.61 -2.59 -18.75 16 21 C 0.67 21.37 6.80 129.79 0.88 22.25 16 22 O -0.57 -22.71 10.55 26.12 0.28 -22.44 16 23 O -0.35 -9.15 9.13 -55.51 -0.51 -9.65 16 24 C 0.13 2.77 1.13 -10.79 -0.01 2.75 16 25 C -0.18 -4.67 8.37 71.98 0.60 -4.07 16 26 C -0.13 -1.70 8.85 71.98 0.64 -1.07 16 27 C -0.18 -3.82 8.37 71.98 0.60 -3.22 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 2.65 4.40 -2.39 -0.01 2.64 16 30 H 0.07 2.88 8.14 -2.39 -0.02 2.87 16 31 H 0.26 16.27 8.72 -92.71 -0.81 15.46 16 32 H 0.11 2.39 7.85 -2.39 -0.02 2.37 16 33 H 0.16 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.15 2.11 7.87 -2.39 -0.02 2.09 16 35 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 1.70 5.88 -2.38 -0.01 1.68 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.05 1.55 5.88 -2.39 -0.01 1.54 16 43 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -76.94 363.98 4.81 -72.13 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.86 Total: 17.44 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 6.18 Total: 11.31 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -2.30 Total: -76.03 kcal Atomic # 8 Polarization: -71.96 SS G_CDS: -0.34 Total: -72.30 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 1.73 Total: 53.00 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -1.32 Total: -5.56 kcal Total: -76.94 4.81 -72.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495967460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.196 kcal (2) G-P(sol) polarization free energy of solvation -76.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds