Wall clock time and date at job start Tue Mar 31 2020 16:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47122 * 2 1 4 4 C 1.52995 * 109.47567 * 239.99549 * 2 1 3 5 5 O 1.45204 * 109.47182 * 119.99608 * 2 1 3 6 6 C 1.34637 * 116.99991 * 60.00086 * 5 2 1 7 7 O 1.21509 * 120.00014 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00410 * 180.02562 * 6 5 2 9 9 C 1.47606 * 122.42604 * 0.02562 * 8 6 5 10 10 S 1.84074 * 102.63771 * 204.78650 * 9 8 6 11 11 C 1.84210 * 93.91127 * 326.56840 * 10 9 8 12 12 C 1.45500 * 122.43357 * 179.97438 * 8 6 5 13 13 H 1.09001 * 108.75457 * 58.13434 * 12 8 6 14 14 C 1.50703 * 108.75392 * 299.91189 * 12 8 6 15 15 O 1.20822 * 119.99880 * 0.02562 * 14 12 8 16 16 O 1.34222 * 119.99989 * 179.97438 * 14 12 8 17 17 C 1.45200 * 117.00098 * 180.02562 * 16 14 12 18 18 C 1.53006 * 109.47003 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.46866 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00305 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99832 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46901 * 89.99815 * 23 21 19 25 25 H 1.48488 * 109.47487 * 210.00255 * 23 21 19 26 26 H 1.48503 * 109.47026 * 330.00635 * 23 21 19 27 27 H 1.08997 * 109.47561 * 300.00096 * 1 2 3 28 28 H 1.08998 * 109.46630 * 60.00438 * 1 2 3 29 29 H 1.09000 * 109.46858 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46865 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46543 * 299.99365 * 3 2 1 32 32 H 1.08997 * 109.46981 * 59.99549 * 3 2 1 33 33 H 1.09000 * 109.47289 * 300.00051 * 4 2 1 34 34 H 1.09003 * 109.46784 * 59.99997 * 4 2 1 35 35 H 1.08998 * 109.47694 * 180.02562 * 4 2 1 36 36 H 1.08993 * 110.77760 * 323.08098 * 9 8 6 37 37 H 1.09007 * 110.77313 * 86.31816 * 9 8 6 38 38 H 1.08997 * 111.04894 * 274.24142 * 11 10 9 39 39 H 1.09004 * 111.05136 * 150.26871 * 11 10 9 40 40 H 1.09000 * 109.47147 * 60.00338 * 17 16 14 41 41 H 1.09001 * 109.47321 * 299.99849 * 17 16 14 42 42 H 1.08993 * 109.46955 * 300.00258 * 18 17 16 43 43 H 1.09000 * 109.47050 * 60.00087 * 18 17 16 44 44 H 0.97002 * 120.00008 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3385 7 8 0.9517 -2.5097 0.5038 8 7 2.0672 -2.6653 2.4173 9 6 2.9185 -2.0660 3.4637 10 16 3.7632 -3.5337 4.1852 11 6 2.3206 -4.6494 3.9254 12 6 1.7077 -4.0582 2.6356 13 1 2.0525 -4.6466 1.7853 14 6 0.2067 -4.1638 2.7194 15 8 -0.4758 -3.1732 2.6065 16 8 -0.3720 -5.3584 2.9184 17 6 -1.8221 -5.3850 2.9879 18 6 -2.2953 -6.8218 3.2178 19 6 -3.8004 -6.8495 3.2893 20 1 -4.3630 -5.9339 3.1819 21 6 -4.4590 -8.0435 3.4928 22 7 -5.7724 -8.0676 3.5556 23 14 -3.4858 -9.6271 3.6792 24 1 -3.1654 -9.8452 5.1127 25 1 -4.2926 -10.7664 3.1734 26 1 -2.2256 -9.5282 2.8999 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7490 -1.2491 34 1 1.6768 -0.2075 -2.1391 35 1 3.1301 -0.7217 -1.2489 36 1 3.6428 -1.3790 3.0264 37 1 2.3106 -1.5590 4.2132 38 1 1.6197 -4.5831 4.7575 39 1 2.6445 -5.6784 3.7695 40 1 -2.2376 -5.0106 2.0523 41 1 -2.1580 -4.7560 3.8122 42 1 -1.9594 -7.4512 2.3938 43 1 -1.8798 -7.1958 4.1535 44 1 -6.2358 -8.9078 3.6985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496023377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:17 Heat of formation + Delta-G solvation = -151.626710 kcal Electronic energy + Delta-G solvation = -27280.091655 eV Core-core repulsion = 23324.837051 eV Total energy + Delta-G solvation = -3955.254604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31289 -40.15819 -38.12368 -36.29172 -36.01306 -34.29469 -33.36637 -31.83074 -30.63240 -27.90400 -27.62071 -27.53614 -25.70785 -24.65626 -22.76698 -20.83611 -20.57406 -19.64157 -18.43931 -18.05178 -17.53147 -17.01504 -16.48613 -16.27272 -16.12537 -15.63959 -15.30653 -14.74188 -14.57864 -14.25658 -14.17346 -14.09214 -13.66914 -13.41666 -13.05411 -12.80672 -12.68457 -12.52034 -12.49463 -12.28860 -12.14690 -12.07069 -11.69033 -11.62721 -11.48866 -11.34517 -11.19147 -10.73399 -10.57906 -10.54362 -10.25121 -10.02565 -9.97212 -9.74961 -9.39255 -9.27662 -8.64655 -8.32411 -6.14943 -4.16508 1.12583 1.45314 1.53936 2.32950 2.54947 2.93531 3.25894 3.33629 3.37481 3.41288 3.82595 4.36408 4.45349 4.47786 4.52357 4.64249 4.67358 4.77592 4.89466 5.03461 5.11983 5.18476 5.21769 5.26202 5.33104 5.45194 5.54620 5.61952 5.67757 5.76426 5.90305 5.94262 6.05978 6.13120 6.25685 6.40473 6.68704 6.85693 7.13089 7.18360 7.59364 7.95682 8.08132 8.37291 8.86584 9.44246 10.97647 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.003131 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.798308 B = 8940.034337 C =10423.271474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.360 6.360 6 C 0.677 3.323 7 O -0.539 6.539 8 N -0.590 5.590 9 C 0.159 3.841 10 S -0.253 6.253 11 C -0.059 4.059 12 C 0.160 3.840 13 H 0.129 0.871 14 C 0.448 3.552 15 O -0.487 6.487 16 O -0.357 6.357 17 C 0.085 3.915 18 C -0.008 4.008 19 C -0.528 4.528 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.897 5.897 23 Si 0.882 3.118 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.143 0.857 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.029 0.971 43 H 0.024 0.976 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.532 15.674 -3.672 27.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.275 6.275 6 C 0.431 3.569 7 O -0.425 6.425 8 N -0.334 5.334 9 C -0.074 4.074 10 S -0.026 6.026 11 C -0.207 4.207 12 C 0.053 3.947 13 H 0.146 0.854 14 C 0.286 3.714 15 O -0.374 6.374 16 O -0.273 6.273 17 C 0.013 3.987 18 C -0.046 4.046 19 C -0.566 4.566 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.708 3.292 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.187 1.187 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.161 0.839 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 23.008 15.589 -3.545 28.017 hybrid contribution -1.018 -0.533 -0.326 1.195 sum 21.991 15.056 -3.871 26.930 Atomic orbital electron populations 1.22514 0.93506 1.05633 1.02496 1.22145 0.94765 0.91358 0.81718 1.21856 1.02067 0.92431 1.03274 1.22524 1.01397 1.03646 0.96528 1.86256 1.71479 1.22844 1.46897 1.17369 0.77916 0.80702 0.80871 1.90962 1.38918 1.70142 1.42467 1.46786 1.53723 1.10555 1.22291 1.24278 0.95255 0.95790 0.92092 1.88437 1.23234 1.08805 1.82115 1.24523 0.96396 1.02368 0.97425 1.20636 0.90128 0.82389 1.01508 0.85358 1.23381 0.91132 0.82710 0.74188 1.90667 1.64636 1.38066 1.43985 1.86447 1.27468 1.31881 1.81534 1.23427 0.71915 1.01602 1.01797 1.19626 0.97220 0.90061 0.97644 1.20829 0.88483 0.96161 1.51134 0.90690 1.24938 0.94810 0.99053 0.94197 1.69895 1.07218 1.27119 1.49228 0.86745 0.80576 0.82911 0.78948 1.20040 1.21156 1.18709 0.92026 0.91125 0.89025 0.91524 0.90010 0.91400 0.89360 0.90966 0.92181 0.85742 0.88135 0.86817 0.83907 0.91556 0.91743 0.95299 0.95779 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 8.37 37.16 0.31 -1.82 16 2 C 0.14 1.41 1.13 -90.62 -0.10 1.30 16 3 C -0.14 -0.98 8.85 37.16 0.33 -0.65 16 4 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 5 O -0.36 -4.32 9.13 -40.32 -0.37 -4.69 16 6 C 0.68 9.53 6.80 54.05 0.37 9.90 16 7 O -0.54 -9.05 10.55 -25.89 -0.27 -9.32 16 8 N -0.59 -7.19 2.76 -174.93 -0.48 -7.67 16 9 C 0.16 1.44 7.44 60.45 0.45 1.89 16 10 S -0.25 -2.28 23.43 -107.50 -2.52 -4.80 16 11 C -0.06 -0.54 6.92 37.98 0.26 -0.28 16 12 C 0.16 1.96 2.95 -68.80 -0.20 1.75 16 13 H 0.13 1.45 8.14 -51.93 -0.42 1.02 16 14 C 0.45 7.49 6.56 36.01 0.24 7.72 16 15 O -0.49 -9.64 14.34 -25.32 -0.36 -10.00 16 16 O -0.36 -6.50 10.07 -39.24 -0.39 -6.89 16 17 C 0.09 1.81 5.40 37.16 0.20 2.01 16 18 C -0.01 -0.19 4.42 -27.88 -0.12 -0.32 16 19 C -0.53 -14.96 9.66 -34.44 -0.33 -15.29 16 20 H 0.07 2.29 7.99 -52.48 -0.42 1.87 16 21 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 22 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 23 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.39 5.88 -51.93 -0.31 1.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.10 5.88 -51.93 -0.31 0.80 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.12 0.93 7.86 -51.93 -0.41 0.52 16 37 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 38 H 0.11 1.07 7.85 -51.93 -0.41 0.66 16 39 H 0.14 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.47 8.13 -51.93 -0.42 1.05 16 41 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 42 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 43 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -33.77 371.04 -7.95 -41.72 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.85 Total: -0.64 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 1.61 Total: 6.72 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.29 Total: -34.21 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.40 Total: -30.91 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.52 Total: -4.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.77 -7.95 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496023377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.905 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds