Wall clock time and date at job start Tue Mar 31 2020 16:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47122 * 2 1 4 4 C 1.52995 * 109.47567 * 239.99549 * 2 1 3 5 5 O 1.45204 * 109.47182 * 119.99608 * 2 1 3 6 6 C 1.34637 * 116.99991 * 60.00086 * 5 2 1 7 7 O 1.21509 * 120.00014 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00410 * 180.02562 * 6 5 2 9 9 C 1.47606 * 122.42604 * 0.02562 * 8 6 5 10 10 S 1.84074 * 102.63771 * 204.78650 * 9 8 6 11 11 C 1.84210 * 93.91127 * 326.56840 * 10 9 8 12 12 C 1.45500 * 122.43357 * 179.97438 * 8 6 5 13 13 H 1.09001 * 108.75457 * 58.13434 * 12 8 6 14 14 C 1.50703 * 108.75392 * 299.91189 * 12 8 6 15 15 O 1.20822 * 119.99880 * 0.02562 * 14 12 8 16 16 O 1.34222 * 119.99989 * 179.97438 * 14 12 8 17 17 C 1.45200 * 117.00098 * 180.02562 * 16 14 12 18 18 C 1.53006 * 109.47003 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.46866 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00305 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99832 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46901 * 89.99815 * 23 21 19 25 25 H 1.48488 * 109.47487 * 210.00255 * 23 21 19 26 26 H 1.48503 * 109.47026 * 330.00635 * 23 21 19 27 27 H 1.08997 * 109.47561 * 300.00096 * 1 2 3 28 28 H 1.08998 * 109.46630 * 60.00438 * 1 2 3 29 29 H 1.09000 * 109.46858 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46865 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46543 * 299.99365 * 3 2 1 32 32 H 1.08997 * 109.46981 * 59.99549 * 3 2 1 33 33 H 1.09000 * 109.47289 * 300.00051 * 4 2 1 34 34 H 1.09003 * 109.46784 * 59.99997 * 4 2 1 35 35 H 1.08998 * 109.47694 * 180.02562 * 4 2 1 36 36 H 1.08993 * 110.77760 * 323.08098 * 9 8 6 37 37 H 1.09007 * 110.77313 * 86.31816 * 9 8 6 38 38 H 1.08997 * 111.04894 * 274.24142 * 11 10 9 39 39 H 1.09004 * 111.05136 * 150.26871 * 11 10 9 40 40 H 1.09000 * 109.47147 * 60.00338 * 17 16 14 41 41 H 1.09001 * 109.47321 * 299.99849 * 17 16 14 42 42 H 1.08993 * 109.46955 * 300.00258 * 18 17 16 43 43 H 1.09000 * 109.47050 * 60.00087 * 18 17 16 44 44 H 0.97002 * 120.00008 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3385 7 8 0.9517 -2.5097 0.5038 8 7 2.0672 -2.6653 2.4173 9 6 2.9185 -2.0660 3.4637 10 16 3.7632 -3.5337 4.1852 11 6 2.3206 -4.6494 3.9254 12 6 1.7077 -4.0582 2.6356 13 1 2.0525 -4.6466 1.7853 14 6 0.2067 -4.1638 2.7194 15 8 -0.4758 -3.1732 2.6065 16 8 -0.3720 -5.3584 2.9184 17 6 -1.8221 -5.3850 2.9879 18 6 -2.2953 -6.8218 3.2178 19 6 -3.8004 -6.8495 3.2893 20 1 -4.3630 -5.9339 3.1819 21 6 -4.4590 -8.0435 3.4928 22 7 -5.7724 -8.0676 3.5556 23 14 -3.4858 -9.6271 3.6792 24 1 -3.1654 -9.8452 5.1127 25 1 -4.2926 -10.7664 3.1734 26 1 -2.2256 -9.5282 2.8999 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7490 -1.2491 34 1 1.6768 -0.2075 -2.1391 35 1 3.1301 -0.7217 -1.2489 36 1 3.6428 -1.3790 3.0264 37 1 2.3106 -1.5590 4.2132 38 1 1.6197 -4.5831 4.7575 39 1 2.6445 -5.6784 3.7695 40 1 -2.2376 -5.0106 2.0523 41 1 -2.1580 -4.7560 3.8122 42 1 -1.9594 -7.4512 2.3938 43 1 -1.8798 -7.1958 4.1535 44 1 -6.2358 -8.9078 3.6985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496023377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:16 Heat of formation + Delta-G solvation = -172.294549 kcal Electronic energy + Delta-G solvation = -27280.987880 eV Core-core repulsion = 23324.837051 eV Total energy + Delta-G solvation = -3956.150829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.40023 -41.42075 -39.17411 -37.63325 -37.20462 -35.44201 -35.14079 -33.11746 -32.27855 -28.73038 -28.41074 -28.29602 -27.44023 -25.78976 -23.99179 -22.62091 -21.75047 -20.65633 -19.53069 -19.32949 -18.81903 -18.46038 -17.78399 -17.57824 -17.16733 -16.86842 -16.36694 -16.16580 -15.67658 -15.44386 -15.39324 -14.99568 -14.87076 -14.61436 -14.47477 -14.19631 -13.64698 -13.38937 -13.29731 -13.23013 -13.19405 -13.05961 -12.94207 -12.89753 -12.62864 -12.53586 -12.48572 -12.41059 -12.12299 -11.82400 -11.58023 -11.49990 -11.45866 -11.39081 -11.13934 -10.82219 -10.30366 -9.01343 -8.35506 -6.44512 0.39572 0.54236 0.73406 1.02407 1.38225 1.39273 1.41168 1.53463 1.76650 2.34218 2.52713 2.93346 2.99522 3.38988 3.68718 3.72008 3.75421 3.90427 3.96140 4.11176 4.13695 4.16087 4.28251 4.32440 4.45187 4.57053 4.57763 4.64839 4.73111 4.74699 4.80928 4.86146 4.99295 5.11556 5.25169 5.26820 5.29473 5.30482 5.42793 5.49968 5.86976 6.13586 6.54805 6.61711 7.03377 7.20705 8.80834 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.003131 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.798308 B = 8940.034337 C =10423.271474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.127 3.873 3 C -0.132 4.132 4 C -0.179 4.179 5 O -0.356 6.356 6 C 0.671 3.329 7 O -0.573 6.573 8 N -0.592 5.592 9 C 0.155 3.845 10 S -0.235 6.235 11 C -0.055 4.055 12 C 0.166 3.834 13 H 0.142 0.858 14 C 0.445 3.555 15 O -0.522 6.522 16 O -0.349 6.349 17 C 0.098 3.902 18 C -0.001 4.001 19 C -0.545 4.545 20 H 0.031 0.969 21 C 0.011 3.989 22 N -0.946 5.946 23 Si 0.957 3.043 24 H -0.259 1.259 25 H -0.282 1.282 26 H -0.241 1.241 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.143 0.857 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.170 0.830 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.042 0.958 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.005 15.422 -3.357 30.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.189 4.189 4 C -0.236 4.236 5 O -0.271 6.271 6 C 0.426 3.574 7 O -0.461 6.461 8 N -0.335 5.335 9 C -0.077 4.077 10 S -0.008 6.008 11 C -0.203 4.203 12 C 0.059 3.941 13 H 0.159 0.841 14 C 0.285 3.715 15 O -0.410 6.410 16 O -0.265 6.265 17 C 0.024 3.976 18 C -0.038 4.038 19 C -0.583 4.583 20 H 0.049 0.951 21 C -0.187 4.187 22 N -0.586 5.586 23 Si 0.778 3.222 24 H -0.184 1.184 25 H -0.208 1.208 26 H -0.164 1.164 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.161 0.839 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.188 0.812 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 26.527 15.371 -3.210 30.827 hybrid contribution -2.143 -0.303 -0.456 2.212 sum 24.384 15.068 -3.666 28.898 Atomic orbital electron populations 1.22467 0.94966 1.03113 1.03301 1.22489 0.93834 0.93167 0.81450 1.21875 1.02835 0.89806 1.04376 1.22468 1.02074 1.01914 0.97124 1.86276 1.71230 1.21818 1.47753 1.17653 0.77592 0.81229 0.80976 1.90953 1.40375 1.70927 1.43871 1.46956 1.53559 1.10652 1.22349 1.24488 0.95374 0.96314 0.91559 1.88439 1.22421 1.08124 1.81845 1.24611 0.96507 1.03660 0.95562 1.20853 0.86392 0.83071 1.03778 0.84084 1.24426 0.93011 0.81504 0.72547 1.90661 1.65891 1.39011 1.45483 1.86430 1.25231 1.32993 1.81856 1.22936 0.74042 1.00056 1.00546 1.19453 0.94181 0.91563 0.98597 1.21112 0.91028 0.94881 1.51267 0.95105 1.25999 0.95879 1.03388 0.93465 1.70050 1.09444 1.28532 1.50525 0.85566 0.79477 0.77163 0.79947 1.18406 1.20812 1.16435 0.92607 0.88933 0.93073 0.90264 0.87917 0.91302 0.92492 0.89040 0.90937 0.83928 0.87595 0.86825 0.81198 0.93472 0.92404 0.94588 0.93991 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.28 8.37 71.98 0.60 -3.67 16 2 C 0.13 2.50 1.13 -10.79 -0.01 2.49 16 3 C -0.13 -1.55 8.85 71.98 0.64 -0.91 16 4 C -0.18 -3.34 8.37 71.98 0.60 -2.74 16 5 O -0.36 -8.34 9.13 -55.47 -0.51 -8.85 16 6 C 0.67 18.93 6.80 129.79 0.88 19.81 16 7 O -0.57 -19.96 10.55 26.13 0.28 -19.69 16 8 N -0.59 -13.88 2.76 -937.76 -2.59 -16.47 16 9 C 0.15 2.51 7.44 127.56 0.95 3.46 16 10 S -0.24 -3.60 23.43 -56.49 -1.32 -4.93 16 11 C -0.06 -0.87 6.92 72.51 0.50 -0.37 16 12 C 0.17 3.84 2.95 44.96 0.13 3.97 16 13 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 14 C 0.44 14.86 6.56 71.24 0.47 15.33 16 15 O -0.52 -21.35 14.34 28.27 0.41 -20.95 16 16 O -0.35 -12.51 10.07 -51.34 -0.52 -13.03 16 17 C 0.10 4.24 5.40 71.98 0.39 4.62 16 18 C 0.00 -0.02 4.42 29.85 0.13 0.11 16 19 C -0.55 -31.73 9.66 25.60 0.25 -31.49 16 20 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 21 C 0.01 0.61 5.47 84.65 0.46 1.08 16 22 N -0.95 -59.12 13.96 21.45 0.30 -58.82 16 23 Si 0.96 42.93 27.47 68.60 1.88 44.81 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.65 5.88 -2.39 -0.01 1.64 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 1.46 5.88 -2.39 -0.01 1.44 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.14 1.79 7.86 -2.39 -0.02 1.77 16 37 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.11 1.86 7.85 -2.39 -0.02 1.85 16 39 H 0.17 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.05 2.20 8.13 -2.39 -0.02 2.18 16 41 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 42 H 0.04 1.65 7.20 -2.39 -0.02 1.63 16 43 H 0.04 1.84 7.57 -2.39 -0.02 1.82 16 44 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -76.70 371.04 4.86 -71.84 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.94 Total: 14.39 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 5.99 Total: 11.68 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -2.29 Total: -75.29 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: -0.34 Total: -62.50 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.88 Total: 44.81 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.32 Total: -4.93 kcal Total: -76.70 4.86 -71.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496023377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.451 kcal (2) G-P(sol) polarization free energy of solvation -76.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds