Wall clock time and date at job start Tue Mar 31 2020 17:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.45894 * 2 1 4 4 C 1.53042 * 109.46029 * 240.02951 * 2 1 3 5 5 C 1.53188 * 109.31720 * 178.62512 * 4 2 1 6 6 N 1.46932 * 108.77502 * 54.63378 * 5 4 2 7 7 S 1.65592 * 120.63178 * 126.37206 * 6 5 4 8 8 O 1.42100 * 104.28196 * 149.36849 * 7 6 5 9 9 O 1.42102 * 104.28006 * 21.51102 * 7 6 5 10 10 C 1.81401 * 104.44916 * 265.44153 * 7 6 5 11 11 C 1.52999 * 109.47280 * 187.66324 * 10 7 6 12 12 C 1.50700 * 115.54789 * 299.63266 * 11 10 7 13 13 H 1.08006 * 120.00273 * 99.56242 * 12 11 10 14 14 C 1.37877 * 120.00027 * 279.84196 * 12 11 10 15 15 N 1.31514 * 120.00198 * 5.97469 * 14 12 11 16 16 Si 1.86806 * 120.00217 * 185.97321 * 14 12 11 17 17 H 1.48498 * 109.46797 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47343 * 119.99921 * 16 14 12 19 19 H 1.48497 * 109.47038 * 240.00379 * 16 14 12 20 20 C 1.52995 * 117.52305 * 85.33285 * 11 10 7 21 21 C 1.52990 * 60.00120 * 107.48324 * 20 11 10 22 22 C 1.46928 * 118.73421 * 306.64349 * 6 5 4 23 23 H 1.08990 * 109.58949 * 293.56589 * 22 6 5 24 24 C 1.50707 * 109.58271 * 173.14329 * 22 6 5 25 25 O 1.20830 * 119.99940 * 304.06929 * 24 22 6 26 26 O 1.34229 * 119.99923 * 124.07060 * 24 22 6 27 27 C 1.52765 * 109.00769 * 53.31380 * 22 6 5 28 28 H 1.09001 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47005 * 299.96937 * 1 2 3 30 30 H 1.08998 * 109.47471 * 59.97096 * 1 2 3 31 31 H 1.09006 * 109.50071 * 58.67155 * 4 2 1 32 32 H 1.09002 * 109.52764 * 298.59203 * 4 2 1 33 33 H 1.09005 * 109.58810 * 294.85333 * 5 4 2 34 34 H 1.08999 * 109.71066 * 174.49130 * 5 4 2 35 35 H 1.08994 * 109.47558 * 67.65920 * 10 7 6 36 36 H 1.09005 * 109.46728 * 307.65602 * 10 7 6 37 37 H 0.96997 * 120.00359 * 185.00490 * 15 14 12 38 38 H 1.09000 * 117.50444 * 214.97583 * 20 11 10 39 39 H 1.09003 * 117.49774 * 359.97438 * 20 11 10 40 40 H 1.09006 * 117.50432 * 252.51417 * 21 20 11 41 41 H 1.09007 * 117.50497 * 107.48903 * 21 20 11 42 42 H 0.96694 * 117.00043 * 179.97438 * 26 24 22 43 43 H 1.09000 * 109.56286 * 185.54596 * 27 22 6 44 44 H 1.09001 * 109.38794 * 65.50895 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6890 -1.2642 6 7 4.0677 -1.2493 0.0002 7 16 5.1653 -2.4891 0.0003 8 8 5.9231 -2.2863 1.1851 9 8 5.7756 -2.4171 -1.2810 10 6 4.1543 -3.9887 0.1402 11 6 5.0654 -5.2010 0.3430 12 6 6.0521 -5.4651 -0.7650 13 1 7.0789 -5.1468 -0.6610 14 6 5.6427 -6.1078 -1.9141 15 7 4.3699 -6.3854 -2.0943 16 14 6.8958 -6.5842 -3.2149 17 1 8.2501 -6.1624 -2.7755 18 1 6.8737 -8.0564 -3.4080 19 1 6.5598 -5.9118 -4.4956 20 6 5.5054 -5.5235 1.7724 21 6 4.4780 -6.4127 1.0694 22 6 3.5669 -0.6926 1.2643 23 1 3.9097 0.3365 1.3716 24 6 4.0748 -1.5200 2.4170 25 8 3.8595 -2.7085 2.4486 26 8 4.7664 -0.9366 3.4085 27 6 2.0396 -0.7208 1.2501 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5134 0.8903 30 1 -0.3634 0.5143 -0.8897 31 1 1.6573 -0.2208 -2.1399 32 1 1.6976 -1.7557 -1.2389 33 1 3.9144 0.3405 -1.3672 34 1 3.9437 -1.2835 -2.0984 35 1 3.5716 -4.1206 -0.7714 36 1 3.4803 -3.8943 0.9918 37 1 4.0906 -6.9011 -2.8670 38 1 6.5086 -5.9266 1.9114 39 1 5.1462 -4.8716 2.5687 40 1 3.4424 -6.3461 1.4031 41 1 4.8050 -7.4009 0.7457 42 1 5.0712 -1.5081 4.1265 43 1 1.6570 -0.2207 2.1398 44 1 1.6969 -1.7555 1.2386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515853379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:28 Heat of formation + Delta-G solvation = -135.650331 kcal Electronic energy + Delta-G solvation = -29381.986561 eV Core-core repulsion = 25427.424745 eV Total energy + Delta-G solvation = -3954.561817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.55982 -38.42873 -36.65107 -36.36146 -35.75340 -35.10811 -33.81169 -31.98957 -31.59469 -28.01736 -27.86128 -25.40781 -25.00701 -23.08435 -21.35594 -21.05340 -20.44136 -19.31684 -18.37632 -18.03376 -17.28174 -16.41082 -16.26430 -15.95735 -15.06511 -15.04714 -14.65201 -14.31625 -14.27539 -14.18132 -14.11715 -13.70776 -13.32991 -13.11872 -12.86511 -12.19504 -12.06822 -11.88777 -11.76428 -11.57659 -11.43402 -11.30646 -11.21517 -11.12769 -11.00355 -10.97521 -10.87251 -10.81470 -10.47342 -10.42828 -10.31238 -10.11977 -9.99317 -9.60558 -8.95868 -8.76519 -8.49688 -7.96543 -6.09475 -4.20043 1.06051 2.21762 2.88907 3.31732 3.39785 3.42136 3.46623 4.42655 4.48111 4.57406 4.61818 4.75231 4.81290 5.01239 5.11353 5.18613 5.21468 5.27897 5.35152 5.43701 5.48589 5.51563 5.61541 5.64629 5.78583 5.86987 5.95197 5.97953 6.04709 6.18095 6.20818 6.29695 6.43789 6.56093 6.65283 6.74873 6.87551 6.93549 7.11010 7.36471 7.50411 7.84946 8.02964 8.30633 8.86136 9.52252 10.98941 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.005545 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.574811 B = 5047.957897 C = 5744.104166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.122 3.878 6 N -1.002 6.002 7 S 2.599 3.401 8 O -0.970 6.970 9 O -0.948 6.948 10 C -0.543 4.543 11 C 0.048 3.952 12 C -0.518 4.518 13 H 0.065 0.935 14 C 0.083 3.917 15 N -0.873 5.873 16 Si 0.889 3.111 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.280 1.280 20 C -0.202 4.202 21 C -0.145 4.145 22 C 0.169 3.831 23 H 0.102 0.898 24 C 0.483 3.517 25 O -0.504 6.504 26 O -0.502 6.502 27 C -0.123 4.123 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.262 0.738 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.414 0.586 43 H 0.079 0.921 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.674 13.984 6.147 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.174 4.174 5 C -0.002 4.002 6 N -0.840 5.840 7 S 2.700 3.300 8 O -0.961 6.961 9 O -0.938 6.938 10 C -0.677 4.677 11 C 0.046 3.954 12 C -0.556 4.556 13 H 0.083 0.917 14 C -0.121 4.121 15 N -0.509 5.509 16 Si 0.716 3.284 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.206 1.206 20 C -0.239 4.239 21 C -0.184 4.184 22 C 0.061 3.939 23 H 0.120 0.880 24 C 0.325 3.675 25 O -0.393 6.393 26 O -0.313 6.313 27 C -0.162 4.162 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.273 0.727 43 H 0.098 0.902 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.031 14.078 5.590 17.144 hybrid contribution 0.140 -1.075 -0.239 1.110 sum -7.891 13.003 5.351 16.124 Atomic orbital electron populations 1.21821 0.94640 1.02236 1.01686 1.21036 0.95803 0.99454 0.94115 0.90680 1.22066 0.95480 1.02060 0.97837 1.21447 0.93891 1.00042 0.84847 1.58284 1.63412 1.52991 1.09265 1.05510 0.74998 0.75546 0.73902 1.93414 1.68138 1.84992 1.49538 1.93513 1.73233 1.85812 1.41257 1.30064 1.12546 1.14757 1.10359 1.18199 0.95857 0.91031 0.90333 1.20633 0.94971 1.40646 0.99301 0.91663 1.24928 0.95107 0.94834 0.97279 1.70005 1.14306 1.37443 1.29109 0.86569 0.82206 0.77889 0.81734 1.19299 1.20834 1.20570 1.23109 0.99027 1.05014 0.96728 1.22520 0.95470 0.96282 1.04123 1.20152 0.95303 0.97756 0.80667 0.87981 1.22954 0.74146 0.86929 0.83467 1.90723 1.55451 1.16059 1.77093 1.84360 1.66268 1.46513 1.34114 1.21943 0.91725 1.03284 0.99217 0.92345 0.92668 0.92403 0.90401 0.90706 0.91181 0.88011 0.85560 0.85514 0.92864 0.90223 0.90022 0.91617 0.90005 0.72653 0.90226 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.15 0.34 -0.79 16 2 C -0.09 -0.77 2.68 -90.58 -0.24 -1.02 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.14 -1.44 5.36 -26.61 -0.14 -1.58 16 5 C 0.12 1.64 6.34 -3.71 -0.02 1.61 16 6 N -1.00 -16.16 3.22 -107.93 -0.35 -16.51 16 7 S 2.60 56.77 4.37 -107.50 -0.47 56.30 16 8 O -0.97 -22.20 14.26 -68.27 -0.97 -23.17 16 9 O -0.95 -23.72 16.15 -57.54 -0.93 -24.65 16 10 C -0.54 -12.44 5.49 37.16 0.20 -12.24 16 11 C 0.05 1.24 1.31 -155.67 -0.20 1.04 16 12 C -0.52 -14.77 7.94 -34.44 -0.27 -15.05 16 13 H 0.07 1.91 7.82 -52.48 -0.41 1.50 16 14 C 0.08 2.35 5.42 -17.82 -0.10 2.25 16 15 N -0.87 -24.66 13.09 55.43 0.73 -23.93 16 16 Si 0.89 22.02 29.55 -169.99 -5.02 16.99 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 C -0.20 -4.74 9.95 -26.74 -0.27 -5.01 16 21 C -0.14 -3.50 9.72 -26.74 -0.26 -3.76 16 22 C 0.17 2.26 3.30 -68.97 -0.23 2.04 16 23 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 24 C 0.48 7.47 4.45 36.01 0.16 7.64 16 25 O -0.50 -9.08 11.73 -26.24 -0.31 -9.39 16 26 O -0.50 -6.59 13.39 -42.99 -0.58 -7.17 16 27 C -0.12 -1.29 4.60 -26.83 -0.12 -1.42 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.10 1.53 6.96 -51.93 -0.36 1.17 16 35 H 0.13 3.01 8.11 -51.93 -0.42 2.59 16 36 H 0.13 2.68 5.36 -51.92 -0.28 2.41 16 37 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 38 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 39 H 0.08 1.82 7.29 -51.93 -0.38 1.44 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 42 H 0.41 3.99 9.10 45.56 0.41 4.40 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.00 8.02 -51.93 -0.42 0.58 16 LS Contribution 361.52 15.07 5.45 5.45 Total: -1.00 -34.74 361.52 -9.67 -44.41 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.06 Total: 7.94 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: -1.15 Total: -26.28 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.38 Total: -40.44 kcal Atomic # 8 Polarization: -61.59 SS G_CDS: -2.79 Total: -64.37 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 56.77 SS G_CDS: -0.47 Total: 56.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.74 -9.67 -44.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515853379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.240 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds